Wall clock time and date at job start Tue Mar 31 2020 20:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46970 * 2 1 4 4 C 1.52999 * 109.47753 * 239.99783 * 2 1 3 5 5 C 1.52994 * 109.47460 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47282 * 59.99849 * 5 4 2 7 7 H 1.09000 * 109.46900 * 179.97438 * 6 5 4 8 8 N 1.46494 * 109.47064 * 59.99952 * 6 5 4 9 9 C 1.34779 * 120.00254 * 85.00223 * 8 6 5 10 10 O 1.21349 * 119.99521 * 359.97438 * 9 8 6 11 11 C 1.49449 * 120.00402 * 180.02562 * 9 8 6 12 12 O 1.21349 * 119.99923 * 353.60940 * 11 9 8 13 13 N 1.34779 * 120.00195 * 173.61679 * 11 9 8 14 14 C 1.46925 * 120.63008 * 351.28618 * 13 11 9 15 15 C 1.53185 * 108.89604 * 233.56286 * 14 13 11 16 16 C 1.53071 * 109.29268 * 305.58095 * 15 14 13 17 17 C 1.53039 * 109.66346 * 61.15276 * 16 15 14 18 18 H 1.09005 * 109.52568 * 58.66456 * 17 16 15 19 19 C 1.50699 * 109.50094 * 178.74902 * 17 16 15 20 20 H 1.08000 * 120.00204 * 6.98625 * 19 17 16 21 21 C 1.37878 * 119.99972 * 186.98759 * 19 17 16 22 22 N 1.31517 * 120.00256 * 355.82569 * 21 19 17 23 23 Si 1.86801 * 120.00196 * 175.82424 * 21 19 17 24 24 H 1.48501 * 109.46719 * 94.99482 * 23 21 19 25 25 H 1.48497 * 109.47170 * 214.99935 * 23 21 19 26 26 H 1.48504 * 109.46691 * 334.99691 * 23 21 19 27 27 C 1.46925 * 120.63102 * 171.31477 * 13 11 9 28 28 C 1.53003 * 109.46743 * 300.00188 * 6 5 4 29 29 C 1.52994 * 109.47385 * 59.99875 * 28 6 5 30 30 H 1.09005 * 109.47275 * 60.00061 * 29 28 6 31 31 C 1.53000 * 109.47103 * 179.97438 * 29 28 6 32 32 H 1.09001 * 109.47271 * 300.00193 * 1 2 3 33 33 H 1.09002 * 109.46679 * 60.00311 * 1 2 3 34 34 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 35 35 H 1.09005 * 109.46536 * 300.00174 * 4 2 1 36 36 H 1.08999 * 109.46941 * 59.99229 * 4 2 1 37 37 H 1.08996 * 109.47421 * 299.99621 * 5 4 2 38 38 H 1.09001 * 109.46978 * 180.02562 * 5 4 2 39 39 H 0.97000 * 120.00511 * 265.00576 * 8 6 5 40 40 H 1.09006 * 109.58343 * 353.42267 * 14 13 11 41 41 H 1.09000 * 109.58334 * 113.69989 * 14 13 11 42 42 H 1.09004 * 109.49611 * 65.38485 * 15 14 13 43 43 H 1.08996 * 109.50232 * 185.48532 * 15 14 13 44 44 H 1.09003 * 109.34829 * 301.12648 * 16 15 14 45 45 H 1.09009 * 109.45216 * 181.24232 * 16 15 14 46 46 H 0.96998 * 120.00683 * 179.97438 * 22 21 19 47 47 H 1.08997 * 109.58448 * 246.15376 * 27 13 11 48 48 H 1.09007 * 109.58362 * 6.57775 * 27 13 11 49 49 H 1.09004 * 109.46375 * 180.02562 * 28 6 5 50 50 H 1.08996 * 109.46823 * 299.99532 * 28 6 5 51 51 H 1.09005 * 109.46626 * 60.00128 * 31 29 28 52 52 H 1.08994 * 109.46906 * 180.02562 * 31 29 28 53 53 H 1.08997 * 109.46954 * 300.00122 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7218 -1.2488 6 6 4.0796 -1.4433 0.0006 7 1 5.1696 -1.4441 0.0006 8 7 3.5908 -2.8243 0.0003 9 6 4.2674 -3.7786 -0.6690 10 8 5.2813 -3.4937 -1.2719 11 6 3.7685 -5.1873 -0.6698 12 8 2.8224 -5.4963 0.0244 13 7 4.3695 -6.1147 -1.4413 14 6 5.3875 -5.7238 -2.4260 15 6 4.9929 -6.2832 -3.7963 16 6 4.7724 -7.7936 -3.6816 17 6 3.6358 -8.0747 -2.6961 18 1 2.7259 -7.5824 -3.0393 19 6 3.4015 -9.5608 -2.6092 20 1 4.0731 -10.2436 -3.1083 21 6 2.3295 -10.0489 -1.8925 22 7 1.5595 -9.2239 -1.2172 23 14 1.9708 -11.8821 -1.8805 24 1 2.5979 -12.5013 -0.6852 25 1 0.5024 -12.0989 -1.8376 26 1 2.5272 -12.5034 -3.1092 27 6 4.0186 -7.5358 -1.3142 28 6 3.5694 -0.7220 1.2497 29 6 2.0395 -0.7214 1.2493 30 1 1.6758 -1.7490 1.2492 31 6 1.5294 -0.0006 2.4988 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.6768 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1392 37 1 3.9338 0.3057 -1.2486 38 1 3.9334 -1.2353 -2.1390 39 1 2.7801 -3.0520 0.4819 40 1 5.4466 -4.6366 -2.4783 41 1 6.3556 -6.1285 -2.1310 42 1 4.0713 -5.8074 -4.1318 43 1 5.7884 -6.0828 -4.5140 44 1 5.6876 -8.2660 -3.3248 45 1 4.5130 -8.1979 -4.6601 46 1 0.8051 -9.5671 -0.7133 47 1 4.8746 -8.0905 -0.9300 48 1 3.1746 -7.6442 -0.6330 49 1 3.9328 -1.2358 2.1397 50 1 3.9331 0.3055 1.2499 51 1 1.8931 1.0269 2.4993 52 1 0.4395 -0.0007 2.4987 53 1 1.8924 -0.5150 3.3886 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328005996.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:45 Heat of formation + Delta-G solvation = -107.274003 kcal Electronic energy + Delta-G solvation = -30949.713379 eV Core-core repulsion = 27012.555422 eV Total energy + Delta-G solvation = -3937.157957 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.08412 -40.64721 -39.26172 -38.50847 -35.90401 -35.10496 -33.47391 -33.15683 -32.24003 -31.63783 -28.33461 -27.58176 -26.84081 -26.36445 -24.43935 -23.52610 -22.79441 -21.83798 -21.73066 -20.49960 -20.08414 -18.86946 -18.24965 -17.83072 -17.03710 -16.81470 -16.45739 -16.32073 -16.02511 -15.53274 -15.38926 -15.18869 -15.01178 -14.73879 -14.68363 -14.59468 -14.38626 -14.02305 -13.90053 -13.49883 -13.34029 -13.00699 -12.97724 -12.87745 -12.70259 -12.68259 -12.50463 -12.46738 -12.34424 -12.29667 -12.14283 -11.85866 -11.75838 -11.61870 -11.38191 -11.11824 -11.02118 -10.96603 -10.86262 -10.59905 -10.23572 -10.06892 -9.55226 -8.13110 -6.28893 0.37601 1.36943 1.41346 1.43497 1.53220 2.15516 2.41114 2.59146 3.16322 3.33264 3.70068 3.73046 3.74686 4.05811 4.11533 4.15524 4.16763 4.31828 4.39165 4.42853 4.52249 4.57254 4.60612 4.66283 4.71115 4.77977 4.79232 4.80462 4.88155 4.94926 4.99674 5.03220 5.04899 5.11517 5.14172 5.16327 5.21705 5.22336 5.25117 5.30353 5.30905 5.41195 5.43192 5.53044 5.54300 5.57062 5.63163 5.82806 5.91537 6.03600 6.29741 6.42440 6.75064 6.84519 6.99645 7.41019 8.92055 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015614 B = 0.002928 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.829676 B = 9560.001108 C =10500.712476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.079 4.079 3 H 0.088 0.912 4 C -0.117 4.117 5 C -0.125 4.125 6 C 0.139 3.861 7 H 0.090 0.910 8 N -0.681 5.681 9 C 0.520 3.480 10 O -0.522 6.522 11 C 0.482 3.518 12 O -0.560 6.560 13 N -0.576 5.576 14 C 0.072 3.928 15 C -0.126 4.126 16 C -0.107 4.107 17 C 0.040 3.960 18 H -0.009 1.009 19 C -0.535 4.535 20 H 0.063 0.937 21 C 0.011 3.989 22 N -0.914 5.914 23 Si 0.959 3.041 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.263 1.263 27 C 0.124 3.876 28 C -0.114 4.114 29 C -0.093 4.093 30 H 0.051 0.949 31 C -0.145 4.145 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.039 0.961 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.411 0.589 40 H 0.139 0.861 41 H 0.073 0.927 42 H 0.046 0.954 43 H 0.101 0.899 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.261 0.739 47 H 0.048 0.952 48 H 0.075 0.925 49 H 0.071 0.929 50 H 0.106 0.894 51 H 0.068 0.932 52 H 0.058 0.942 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.214 23.060 3.352 23.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.097 4.097 3 H 0.107 0.893 4 C -0.154 4.154 5 C -0.164 4.164 6 C 0.037 3.963 7 H 0.108 0.892 8 N -0.334 5.334 9 C 0.301 3.699 10 O -0.401 6.401 11 C 0.265 3.735 12 O -0.439 6.439 13 N -0.308 5.308 14 C -0.049 4.049 15 C -0.163 4.163 16 C -0.144 4.144 17 C 0.021 3.979 18 H 0.009 0.991 19 C -0.574 4.574 20 H 0.081 0.919 21 C -0.189 4.189 22 N -0.553 5.553 23 Si 0.784 3.216 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.187 1.187 27 C 0.002 3.998 28 C -0.152 4.152 29 C -0.112 4.112 30 H 0.069 0.931 31 C -0.202 4.202 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.068 0.932 39 H 0.249 0.751 40 H 0.156 0.844 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.119 0.881 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.093 0.907 49 H 0.090 0.910 50 H 0.124 0.876 51 H 0.087 0.913 52 H 0.077 0.923 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.292 23.119 3.406 23.759 hybrid contribution -1.080 -1.784 0.293 2.106 sum 3.212 21.335 3.699 21.890 Atomic orbital electron populations 1.21908 0.95363 1.01281 1.02300 1.21136 0.95440 0.99928 0.93224 0.89332 1.21587 0.95194 0.99952 0.98687 1.21897 0.96032 1.01660 0.96778 1.21345 0.99637 0.78348 0.97013 0.89180 1.46045 1.28446 1.08494 1.50414 1.19886 0.84185 0.85764 0.80095 1.90433 1.24990 1.82022 1.42655 1.20657 0.83592 0.87540 0.81700 1.90740 1.27623 1.81789 1.43756 1.48459 1.38910 1.07743 1.35675 1.22905 0.89809 1.05064 0.87088 1.21932 1.01762 0.95745 0.96906 1.21563 0.98425 0.95377 0.99068 1.18890 0.93253 0.94741 0.91008 0.99072 1.21476 1.11336 0.92401 1.32167 0.91911 1.25900 0.95948 1.02318 0.94731 1.70109 1.17666 1.36238 1.31260 0.85530 0.77184 0.80155 0.78721 1.20139 1.21164 1.18744 1.21929 0.99287 0.76664 1.01878 1.21889 0.95469 1.02108 0.95704 1.21195 0.94962 0.99201 0.95805 0.93072 1.21842 1.01324 1.00815 0.96221 0.91312 0.92443 0.94195 0.94295 0.91308 0.88249 0.93154 0.75114 0.84449 0.90836 0.93493 0.88056 0.92357 0.92740 0.93029 0.93387 0.90683 0.91022 0.87614 0.91268 0.92292 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.84 71.98 0.64 -1.55 16 2 C -0.08 -1.09 2.25 -10.79 -0.02 -1.11 16 3 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 4 C -0.12 -2.05 5.05 30.59 0.15 -1.89 16 5 C -0.13 -2.15 5.60 30.59 0.17 -1.98 16 6 C 0.14 2.59 2.78 44.99 0.13 2.71 16 7 H 0.09 1.76 7.58 -2.39 -0.02 1.74 16 8 N -0.68 -17.57 4.22 -443.87 -1.87 -19.44 16 9 C 0.52 17.09 7.71 87.27 0.67 17.76 16 10 O -0.52 -17.07 12.84 -3.24 -0.04 -17.12 16 11 C 0.48 20.28 7.73 87.27 0.67 20.96 16 12 O -0.56 -27.27 15.93 -3.24 -0.05 -27.32 16 13 N -0.58 -24.71 2.97 -820.49 -2.44 -27.15 16 14 C 0.07 2.50 5.98 86.36 0.52 3.02 16 15 C -0.13 -4.24 6.09 30.68 0.19 -4.06 16 16 C -0.11 -4.34 5.10 30.63 0.16 -4.19 16 17 C 0.04 2.08 2.16 -11.46 -0.02 2.06 16 18 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 19 C -0.54 -29.70 8.47 25.60 0.22 -29.48 16 20 H 0.06 3.35 7.75 -2.91 -0.02 3.33 16 21 C 0.01 0.61 5.37 84.65 0.45 1.06 16 22 N -0.91 -55.39 11.77 21.45 0.25 -55.13 16 23 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 26 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 27 C 0.12 6.28 5.50 86.36 0.48 6.76 16 28 C -0.11 -1.52 4.89 30.59 0.15 -1.37 16 29 C -0.09 -1.34 2.07 -10.80 -0.02 -1.36 16 30 H 0.05 0.96 6.51 -2.38 -0.02 0.94 16 31 C -0.14 -1.69 8.84 71.98 0.64 -1.06 16 32 H 0.07 0.84 6.43 -2.39 -0.02 0.82 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.04 0.89 7.60 -2.38 -0.02 0.87 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.41 10.87 6.35 -92.71 -0.59 10.28 16 40 H 0.14 4.55 4.31 -48.41 -0.21 4.34 16 41 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 44 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 46 H 0.26 15.14 8.31 -92.71 -0.77 14.36 16 47 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 48 H 0.07 4.44 5.51 -2.38 -0.01 4.43 16 49 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 50 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 52 H 0.06 0.70 6.43 -2.39 -0.02 0.69 16 53 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -68.23 398.23 3.13 -65.10 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.10 Total: 28.50 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 5.16 Total: 6.28 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -4.06 Total: -101.73 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -0.09 Total: -44.44 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -68.23 3.13 -65.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328005996.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.172 kcal (2) G-P(sol) polarization free energy of solvation -68.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds