Wall clock time and date at job start Tue Mar 31 2020 20:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47213 * 2 1 4 4 C 1.53004 * 109.46974 * 240.00888 * 2 1 3 5 5 C 1.52999 * 109.46827 * 299.99324 * 4 2 1 6 6 C 1.52992 * 109.47271 * 300.00036 * 5 4 2 7 7 H 1.08995 * 109.47471 * 300.00375 * 6 5 4 8 8 N 1.46501 * 109.47150 * 179.97438 * 6 5 4 9 9 C 1.34781 * 119.99272 * 85.00192 * 8 6 5 10 10 O 1.21349 * 120.00674 * 0.02562 * 9 8 6 11 11 C 1.49458 * 119.99820 * 179.97438 * 9 8 6 12 12 O 1.21346 * 119.99867 * 353.23427 * 11 9 8 13 13 N 1.34766 * 119.99974 * 173.22934 * 11 9 8 14 14 C 1.46925 * 120.63217 * 351.35599 * 13 11 9 15 15 C 1.53192 * 108.77827 * 233.62789 * 14 13 11 16 16 C 1.53047 * 109.31346 * 305.36857 * 15 14 13 17 17 C 1.53033 * 109.53922 * 61.35935 * 16 15 14 18 18 H 1.09002 * 109.49981 * 58.58955 * 17 16 15 19 19 C 1.50700 * 109.49846 * 178.68502 * 17 16 15 20 20 H 1.07999 * 119.99903 * 0.02562 * 19 17 16 21 21 C 1.37878 * 120.00268 * 180.02562 * 19 17 16 22 22 N 1.31521 * 119.99816 * 359.97438 * 21 19 17 23 23 Si 1.86793 * 120.00267 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47276 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47281 * 119.99961 * 23 21 19 26 26 H 1.48506 * 109.47248 * 239.99977 * 23 21 19 27 27 C 1.46931 * 120.63043 * 171.37871 * 13 11 9 28 28 C 1.53004 * 109.47224 * 60.00207 * 6 5 4 29 29 C 1.52992 * 109.47644 * 120.00533 * 2 1 3 30 30 H 1.09004 * 109.47284 * 180.02562 * 29 2 1 31 31 C 1.53001 * 109.47251 * 299.99822 * 29 2 1 32 32 H 1.09005 * 109.46856 * 299.98935 * 1 2 3 33 33 H 1.08995 * 109.47661 * 59.99644 * 1 2 3 34 34 H 1.08998 * 109.46826 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.47061 * 59.99370 * 4 2 1 36 36 H 1.09004 * 109.46755 * 179.97438 * 4 2 1 37 37 H 1.09005 * 109.46741 * 179.97438 * 5 4 2 38 38 H 1.09008 * 109.46924 * 60.00661 * 5 4 2 39 39 H 0.96997 * 120.00868 * 265.00187 * 8 6 5 40 40 H 1.09007 * 109.58788 * 113.84461 * 14 13 11 41 41 H 1.08997 * 109.58986 * 353.41593 * 14 13 11 42 42 H 1.09002 * 109.49364 * 65.31749 * 15 14 13 43 43 H 1.08995 * 109.50003 * 185.41210 * 15 14 13 44 44 H 1.08997 * 109.46026 * 181.38439 * 16 15 14 45 45 H 1.09002 * 109.45706 * 301.33942 * 16 15 14 46 46 H 0.97000 * 120.00052 * 179.97438 * 22 21 19 47 47 H 1.08993 * 109.58600 * 6.58114 * 27 13 11 48 48 H 1.09003 * 109.70279 * 246.23077 * 27 13 11 49 49 H 1.08995 * 109.47280 * 59.99806 * 28 6 5 50 50 H 1.08995 * 109.47361 * 180.02562 * 28 6 5 51 51 H 1.08996 * 109.47546 * 179.97438 * 31 29 2 52 52 H 1.08998 * 109.47006 * 300.00291 * 31 29 2 53 53 H 1.09004 * 109.46953 * 60.00218 * 31 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5301 -2.1636 -1.2495 6 6 2.0402 -2.8849 -0.0004 7 1 3.1301 -2.8848 -0.0004 8 7 1.5514 -4.2660 -0.0002 9 6 2.2279 -5.2202 -0.6698 10 8 3.2419 -4.9356 -1.2725 11 6 1.7296 -6.6293 -0.6692 12 8 0.7888 -6.9398 0.0314 13 7 2.3252 -7.5549 -1.4468 14 6 3.3367 -7.1619 -2.4373 15 6 2.9294 -7.7181 -3.8054 16 6 2.7130 -9.2291 -3.6934 17 6 1.5831 -9.5122 -2.7010 18 1 0.6713 -9.0186 -3.0372 19 6 1.3491 -10.9985 -2.6157 20 1 1.9467 -11.6741 -3.2096 21 6 0.3720 -11.4957 -1.7795 22 7 -0.3554 -10.6729 -1.0559 23 14 0.0825 -13.3380 -1.6733 24 1 1.0256 -14.0405 -2.5802 25 1 0.3043 -13.7944 -0.2777 26 1 -1.3132 -13.6439 -2.0782 27 6 1.9751 -8.9763 -1.3204 28 6 1.5302 -2.1638 1.2490 29 6 2.0401 -0.7213 1.2491 30 1 3.1301 -0.7209 1.2492 31 6 1.5302 -0.0002 2.4984 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.6765 -0.2072 -2.1393 36 1 3.1300 -0.7207 -1.2496 37 1 1.8930 -2.6772 -2.1398 38 1 0.4400 -2.1636 -1.2495 39 1 0.7410 -4.4937 0.4818 40 1 4.3063 -7.5697 -2.1511 41 1 3.3957 -6.0747 -2.4878 42 1 2.0049 -7.2414 -4.1313 43 1 3.7184 -7.5163 -4.5298 44 1 2.4470 -9.6312 -4.6710 45 1 3.6306 -9.7024 -3.3438 46 1 -1.0430 -11.0227 -0.4679 47 1 1.1357 -9.0862 -0.6339 48 1 2.8320 -9.5336 -0.9419 49 1 0.4402 -2.1639 1.2491 50 1 1.8940 -2.6774 2.1389 51 1 1.8932 -0.5143 3.3883 52 1 1.8935 1.0275 2.4985 53 1 0.4402 -0.0003 2.4986 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328005997.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:49 Heat of formation + Delta-G solvation = -105.957164 kcal Electronic energy + Delta-G solvation = -30571.815428 eV Core-core repulsion = 26634.714574 eV Total energy + Delta-G solvation = -3937.100854 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.04037 -40.67633 -39.42415 -38.51536 -36.10347 -35.12975 -33.47810 -33.21224 -31.64316 -31.56351 -28.47801 -27.61718 -26.85671 -26.43259 -24.55674 -23.52191 -23.02296 -22.14157 -21.50780 -20.57544 -19.36728 -18.74043 -18.17147 -17.92580 -17.00214 -16.91967 -16.60851 -16.42216 -16.02881 -15.87339 -15.57552 -15.18245 -14.89912 -14.78188 -14.65404 -14.45227 -14.24270 -13.92768 -13.84776 -13.53225 -13.47110 -13.19497 -12.97264 -12.89609 -12.78725 -12.73801 -12.48167 -12.38166 -12.30172 -12.15563 -11.97882 -11.77267 -11.67768 -11.56256 -11.22972 -11.13006 -11.11330 -11.03904 -10.98179 -10.55681 -10.25174 -10.07321 -9.54971 -8.11835 -6.28672 0.36742 1.34753 1.41682 1.42529 1.54041 2.14566 2.41043 2.57034 3.16083 3.31636 3.65030 3.73310 3.89114 4.08614 4.11828 4.16474 4.19270 4.31201 4.33999 4.37003 4.52724 4.57799 4.61084 4.64217 4.71263 4.74802 4.79374 4.80664 4.86565 4.95709 5.03420 5.04445 5.06561 5.13083 5.18327 5.18498 5.20393 5.22208 5.26891 5.31956 5.36429 5.38967 5.46774 5.50012 5.54233 5.57337 5.69104 5.83898 5.93691 6.03276 6.29994 6.43587 6.74567 6.83815 6.99253 7.41195 8.92096 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021421 B = 0.002504 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.833080 B =11180.114252 C =11899.969404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 H 0.082 0.918 4 C -0.107 4.107 5 C -0.129 4.129 6 C 0.144 3.856 7 H 0.082 0.918 8 N -0.686 5.686 9 C 0.521 3.479 10 O -0.523 6.523 11 C 0.484 3.516 12 O -0.558 6.558 13 N -0.576 5.576 14 C 0.072 3.928 15 C -0.126 4.126 16 C -0.107 4.107 17 C 0.039 3.961 18 H -0.011 1.011 19 C -0.535 4.535 20 H 0.063 0.937 21 C 0.010 3.990 22 N -0.914 5.914 23 Si 0.959 3.041 24 H -0.262 1.262 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.120 3.880 28 C -0.120 4.120 29 C -0.079 4.079 30 H 0.073 0.927 31 C -0.147 4.147 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.415 0.585 40 H 0.073 0.927 41 H 0.138 0.862 42 H 0.048 0.952 43 H 0.100 0.900 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.261 0.739 47 H 0.085 0.915 48 H 0.045 0.955 49 H 0.079 0.921 50 H 0.070 0.930 51 H 0.054 0.946 52 H 0.063 0.937 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.782 24.189 3.037 25.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 H 0.101 0.899 4 C -0.145 4.145 5 C -0.168 4.168 6 C 0.041 3.959 7 H 0.101 0.899 8 N -0.337 5.337 9 C 0.302 3.698 10 O -0.401 6.401 11 C 0.266 3.734 12 O -0.437 6.437 13 N -0.308 5.308 14 C -0.048 4.048 15 C -0.164 4.164 16 C -0.144 4.144 17 C 0.020 3.980 18 H 0.007 0.993 19 C -0.573 4.573 20 H 0.081 0.919 21 C -0.189 4.189 22 N -0.552 5.552 23 Si 0.785 3.215 24 H -0.186 1.186 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.001 4.001 28 C -0.158 4.158 29 C -0.098 4.098 30 H 0.091 0.909 31 C -0.204 4.204 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.252 0.748 40 H 0.091 0.909 41 H 0.155 0.845 42 H 0.066 0.934 43 H 0.119 0.881 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.103 0.897 48 H 0.063 0.937 49 H 0.098 0.902 50 H 0.089 0.911 51 H 0.073 0.927 52 H 0.083 0.917 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.880 24.229 3.107 25.125 hybrid contribution -0.935 -1.677 0.361 1.953 sum 4.945 22.552 3.468 23.347 Atomic orbital electron populations 1.22007 0.95160 1.01914 1.02058 1.21146 0.96119 0.99457 0.93543 0.89933 1.21506 1.00836 0.93530 0.98613 1.21939 1.01514 0.96625 0.96711 1.21278 0.99708 0.77994 0.96886 0.89949 1.45972 1.28713 1.08411 1.50610 1.19917 0.84143 0.85792 0.79966 1.90444 1.24989 1.82070 1.42604 1.20599 0.83572 0.87421 0.81781 1.90742 1.27790 1.81675 1.43477 1.48452 1.39268 1.07844 1.35226 1.22898 0.89980 1.04945 0.87021 1.21930 1.01770 0.95747 0.96907 1.21552 0.98486 0.95374 0.99008 1.18900 0.93176 0.94790 0.91159 0.99277 1.21510 1.18368 0.92519 1.24896 0.91925 1.25892 0.95477 1.02386 0.95158 1.70077 1.22227 1.35904 1.27024 0.85486 0.77953 0.80186 0.77916 1.18620 1.20709 1.20826 1.21944 0.99637 0.76481 1.02054 1.21916 1.02144 0.96051 0.95679 1.21059 1.00414 0.92771 0.95542 0.90863 1.21859 1.01684 1.00433 0.96416 0.91718 0.92694 0.92794 0.90931 0.91626 0.93243 0.91072 0.74834 0.90914 0.84537 0.93355 0.88125 0.92707 0.92387 0.92987 0.89688 0.93669 0.90233 0.91148 0.92734 0.91746 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.15 71.98 0.59 -1.14 16 2 C -0.08 -0.93 2.72 -10.79 -0.03 -0.96 16 3 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 4 C -0.11 -1.45 5.45 30.60 0.17 -1.29 16 5 C -0.13 -2.37 5.22 30.59 0.16 -2.21 16 6 C 0.14 2.83 2.45 44.99 0.11 2.94 16 7 H 0.08 1.79 7.58 -2.39 -0.02 1.78 16 8 N -0.69 -17.59 5.07 -443.86 -2.25 -19.84 16 9 C 0.52 17.13 7.70 87.27 0.67 17.81 16 10 O -0.52 -17.31 12.85 -3.24 -0.04 -17.35 16 11 C 0.48 20.23 7.73 87.27 0.67 20.90 16 12 O -0.56 -26.91 15.93 -3.23 -0.05 -26.96 16 13 N -0.58 -24.72 2.97 -820.48 -2.44 -27.16 16 14 C 0.07 2.52 5.98 86.36 0.52 3.03 16 15 C -0.13 -4.24 6.08 30.67 0.19 -4.05 16 16 C -0.11 -4.33 5.11 30.62 0.16 -4.18 16 17 C 0.04 2.01 2.25 -11.47 -0.03 1.98 16 18 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 19 C -0.53 -29.59 8.56 25.60 0.22 -29.37 16 20 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 21 C 0.01 0.58 5.30 84.65 0.45 1.03 16 22 N -0.91 -54.91 11.40 21.45 0.24 -54.67 16 23 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 24 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 27 C 0.12 6.11 5.41 86.36 0.47 6.57 16 28 C -0.12 -1.76 4.40 30.60 0.13 -1.62 16 29 C -0.08 -0.91 2.49 -10.80 -0.03 -0.94 16 30 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 31 C -0.15 -1.42 8.84 71.98 0.64 -0.79 16 32 H 0.06 0.63 6.43 -2.38 -0.02 0.61 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.05 0.70 4.81 -2.39 -0.01 0.69 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.07 1.28 6.43 -2.38 -0.02 1.26 16 39 H 0.41 10.31 8.09 -92.71 -0.75 9.56 16 40 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 41 H 0.14 4.54 4.32 -47.22 -0.20 4.33 16 42 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 44 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 47 H 0.08 5.02 5.13 -2.39 -0.01 5.01 16 48 H 0.04 2.26 8.14 -2.39 -0.02 2.24 16 49 H 0.08 1.10 6.43 -2.39 -0.02 1.09 16 50 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 52 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 53 H 0.06 0.58 6.43 -2.38 -0.02 0.57 16 Total: -1.00 -67.35 394.91 2.50 -64.84 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -0.04 Total: 27.24 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 5.05 Total: 7.73 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -4.44 Total: -101.66 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -0.09 Total: -44.31 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -67.35 2.50 -64.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328005997.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.113 kcal (2) G-P(sol) polarization free energy of solvation -67.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds