Wall clock time and date at job start Tue Mar 31 2020 20:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46933 * 2 1 4 4 C 1.52997 * 109.47211 * 240.00000 * 2 1 3 5 5 C 1.52997 * 109.47211 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47143 * 60.00158 * 5 4 2 7 7 C 1.52997 * 109.46938 * 300.00009 * 6 5 4 8 8 H 1.08998 * 109.47172 * 300.00178 * 7 6 5 9 9 N 1.46501 * 109.47385 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99891 * 300.00137 * 9 7 6 11 11 C 1.34777 * 120.00138 * 119.99637 * 9 7 6 12 12 O 1.21341 * 119.99858 * 5.02765 * 11 9 7 13 13 C 1.49455 * 119.99844 * 185.02851 * 11 9 7 14 14 O 1.21346 * 120.00170 * 275.15342 * 13 11 9 15 15 N 1.34770 * 119.99833 * 95.15364 * 13 11 9 16 16 C 1.46929 * 120.63525 * 354.97317 * 15 13 11 17 17 C 1.53194 * 108.77625 * 126.36625 * 16 15 13 18 18 C 1.53048 * 109.30939 * 54.63812 * 17 16 15 19 19 C 1.53034 * 109.53801 * 298.63481 * 18 17 16 20 20 H 1.09001 * 109.49933 * 301.37926 * 19 18 17 21 21 C 1.50708 * 109.49590 * 181.31430 * 19 18 17 22 22 H 1.07997 * 119.99726 * 0.02562 * 21 19 18 23 23 C 1.37870 * 119.99837 * 179.97438 * 21 19 18 24 24 N 1.31513 * 120.00257 * 0.02562 * 23 21 19 25 25 Si 1.86802 * 119.99891 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47109 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47601 * 119.99958 * 25 23 21 28 28 H 1.48500 * 109.47075 * 240.00073 * 25 23 21 29 29 C 1.46930 * 120.63116 * 174.95275 * 15 13 11 30 30 C 1.53003 * 109.46822 * 119.99959 * 2 1 3 31 31 H 1.09001 * 109.47659 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47527 * 300.00274 * 1 2 3 33 33 H 1.09005 * 109.47384 * 60.00132 * 1 2 3 34 34 H 1.09005 * 109.47054 * 59.99666 * 4 2 1 35 35 H 1.09001 * 109.46904 * 300.00579 * 4 2 1 36 36 H 1.08998 * 109.46933 * 300.00000 * 5 4 2 37 37 H 1.09001 * 109.46836 * 179.97438 * 5 4 2 38 38 H 1.08998 * 109.47341 * 179.97438 * 6 5 4 39 39 H 1.08999 * 109.47390 * 59.99534 * 6 5 4 40 40 H 1.08999 * 109.47248 * 264.79353 * 10 9 7 41 41 H 1.09001 * 109.47263 * 24.79049 * 10 9 7 42 42 H 1.09000 * 109.47709 * 144.79409 * 10 9 7 43 43 H 1.08992 * 109.58865 * 246.16135 * 16 15 13 44 44 H 1.08999 * 109.58029 * 6.58474 * 16 15 13 45 45 H 1.08997 * 109.50039 * 294.69072 * 17 16 15 46 46 H 1.08997 * 109.49563 * 174.58964 * 17 16 15 47 47 H 1.08992 * 109.45726 * 178.61204 * 18 17 16 48 48 H 1.08996 * 109.45609 * 58.65563 * 18 17 16 49 49 H 0.97004 * 120.00135 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.58794 * 113.84456 * 29 15 13 51 51 H 1.09002 * 109.70247 * 353.49009 * 29 15 13 52 52 H 1.08998 * 109.47333 * 60.00286 * 30 2 1 53 53 H 1.09001 * 109.47372 * 299.99619 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5699 -0.7218 -1.2489 6 6 4.0794 -1.4435 0.0003 7 6 3.5694 -0.7222 1.2496 8 1 3.9331 0.3053 1.2498 9 7 4.0577 -1.4128 2.4458 10 6 3.7038 -2.8154 2.6776 11 6 4.8326 -0.7578 3.3329 12 8 5.0508 0.4271 3.1892 13 6 5.4230 -1.4910 4.4937 14 8 4.7752 -1.6430 5.5085 15 7 6.6750 -1.9834 4.4134 16 6 7.4314 -1.9044 3.1563 17 6 8.7802 -1.2331 3.4337 18 6 9.5000 -1.9875 4.5540 19 6 8.6599 -1.9298 5.8318 20 1 8.4977 -0.8895 6.1140 21 6 9.3845 -2.6452 6.9429 22 1 10.3482 -3.0958 6.7567 23 6 8.8176 -2.7236 8.1972 24 7 7.6443 -2.1745 8.4240 25 14 9.7160 -3.6097 9.5745 26 1 11.0073 -4.1367 9.0645 27 1 9.9729 -2.6618 10.6883 28 1 8.8817 -4.7359 10.0655 29 6 7.3098 -2.6089 5.5816 30 6 2.0399 -0.7213 1.2493 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6766 -0.2074 -2.1392 35 1 1.6765 -1.7489 -1.2492 36 1 3.9336 0.3057 -1.2487 37 1 3.9332 -1.2360 -2.1387 38 1 5.1694 -1.4443 0.0004 39 1 3.7157 -2.4710 0.0002 40 1 2.8293 -2.8670 3.3262 41 1 3.4787 -3.2955 1.7253 42 1 4.5400 -3.3272 3.1539 43 1 7.5964 -2.9083 2.7654 44 1 6.8723 -1.3145 2.4300 45 1 8.6164 -0.1994 3.7381 46 1 9.3899 -1.2547 2.5304 47 1 10.4708 -1.5268 4.7365 48 1 9.6415 -3.0272 4.2590 49 1 7.2452 -2.2300 9.3064 50 1 7.4649 -3.6704 5.3885 51 1 6.6713 -2.4862 6.4565 52 1 1.6766 -1.7489 1.2493 53 1 1.6766 -0.2074 2.1393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328138105.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:06 Heat of formation + Delta-G solvation = -111.791914 kcal Electronic energy + Delta-G solvation = -31080.596247 eV Core-core repulsion = 27143.242379 eV Total energy + Delta-G solvation = -3937.353868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.15197 -40.50008 -39.22902 -38.43284 -36.51926 -35.35363 -33.58990 -33.21752 -31.71996 -31.12244 -28.25441 -27.51456 -27.28369 -26.83211 -24.81607 -23.56995 -23.01793 -22.05652 -20.99577 -20.53833 -19.76605 -19.01242 -18.22577 -18.08203 -17.63970 -16.59572 -16.44016 -16.11092 -15.85744 -15.67866 -15.37338 -15.29964 -15.09254 -14.87581 -14.65564 -14.44093 -14.30866 -14.07759 -13.93539 -13.64491 -13.60441 -13.38565 -13.21267 -12.92219 -12.77716 -12.74886 -12.59539 -12.50496 -12.33004 -12.24330 -12.05465 -11.88472 -11.81623 -11.71212 -11.44780 -11.28986 -11.13749 -11.10981 -10.98911 -10.58881 -10.49967 -9.88788 -9.64448 -8.12472 -6.29637 0.91445 1.11048 1.39030 1.42256 1.44704 1.54531 2.32096 2.42654 3.10045 3.17517 3.65733 3.76483 3.87896 3.89332 4.05346 4.07145 4.10277 4.22820 4.23714 4.36670 4.45865 4.49151 4.51983 4.56341 4.62908 4.64422 4.69612 4.73516 4.75734 4.79864 4.84051 4.96708 5.02647 5.05112 5.08767 5.15252 5.17389 5.20281 5.25608 5.27898 5.32690 5.39509 5.40670 5.40803 5.45403 5.57283 5.58979 5.84619 5.90802 5.93979 6.26231 6.31071 6.61381 6.79227 6.87495 7.41093 8.91784 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024072 B = 0.002726 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.891050 B =10268.640024 C =10889.194855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.061 0.939 4 C -0.110 4.110 5 C -0.114 4.114 6 C -0.121 4.121 7 C 0.134 3.866 8 H 0.077 0.923 9 N -0.584 5.584 10 C 0.069 3.931 11 C 0.524 3.476 12 O -0.551 6.551 13 C 0.500 3.500 14 O -0.563 6.563 15 N -0.585 5.585 16 C 0.106 3.894 17 C -0.128 4.128 18 C -0.103 4.103 19 C 0.034 3.966 20 H -0.019 1.019 21 C -0.530 4.530 22 H 0.067 0.933 23 C 0.008 3.992 24 N -0.918 5.918 25 Si 0.960 3.040 26 H -0.258 1.258 27 H -0.286 1.286 28 H -0.281 1.281 29 C 0.125 3.875 30 C -0.117 4.117 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.122 0.878 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.040 0.960 46 H 0.109 0.891 47 H 0.055 0.945 48 H 0.069 0.931 49 H 0.260 0.740 50 H 0.058 0.942 51 H 0.078 0.922 52 H 0.083 0.917 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.444 -2.549 -24.962 27.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.080 0.920 4 C -0.148 4.148 5 C -0.152 4.152 6 C -0.159 4.159 7 C 0.032 3.968 8 H 0.095 0.905 9 N -0.316 5.316 10 C -0.073 4.073 11 C 0.307 3.693 12 O -0.428 6.428 13 C 0.282 3.718 14 O -0.441 6.441 15 N -0.317 5.317 16 C -0.016 4.016 17 C -0.166 4.166 18 C -0.140 4.140 19 C 0.015 3.985 20 H -0.001 1.001 21 C -0.569 4.569 22 H 0.085 0.915 23 C -0.191 4.191 24 N -0.557 5.557 25 Si 0.786 3.214 26 H -0.182 1.182 27 H -0.212 1.212 28 H -0.207 1.207 29 C 0.003 3.997 30 C -0.156 4.156 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.140 0.860 42 H 0.080 0.920 43 H 0.122 0.878 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.127 0.873 47 H 0.073 0.927 48 H 0.088 0.912 49 H 0.069 0.931 50 H 0.076 0.924 51 H 0.096 0.904 52 H 0.102 0.898 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.783 -2.006 -24.378 26.732 hybrid contribution 0.277 0.150 1.894 1.920 sum -10.506 -1.855 -22.484 24.887 Atomic orbital electron populations 1.21796 0.94221 1.02349 1.01804 1.21093 0.96231 0.99231 0.94160 0.92034 1.21610 0.94962 1.01284 0.96912 1.21494 0.95972 1.00663 0.97032 1.21882 1.00954 1.00509 0.92542 1.21419 0.95069 0.97208 0.83093 0.90472 1.48038 1.48390 1.13646 1.21565 1.22080 1.01284 0.79344 1.04584 1.20197 0.79812 0.87140 0.82198 1.90734 1.62366 1.15736 1.74000 1.20609 0.83269 0.79356 0.88516 1.90774 1.61825 1.58740 1.32803 1.48601 1.12939 1.55698 1.14492 1.22025 0.92900 1.02858 0.83777 1.21916 0.95845 0.98551 1.00253 1.21513 0.98165 1.00256 0.94107 1.18960 0.91790 0.94060 0.93683 1.00100 1.21512 1.04868 1.35622 0.94863 0.91456 1.25928 0.95587 0.96156 1.01444 1.70092 1.17568 1.45329 1.22724 0.85467 0.79043 0.78099 0.78820 1.18198 1.21244 1.20679 1.21927 0.96472 0.94964 0.86291 1.21912 0.93033 1.02274 0.98363 0.91901 0.93595 0.91606 0.90743 0.90742 0.92448 0.89715 0.91669 0.89490 0.92011 0.85962 0.92038 0.87769 0.90112 0.94149 0.87302 0.92664 0.91227 0.93090 0.92385 0.90351 0.89843 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.19 71.98 0.66 -1.01 16 2 C -0.09 -1.17 2.72 -10.79 -0.03 -1.20 16 3 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.11 -1.05 5.20 30.59 0.16 -0.89 16 5 C -0.11 -1.20 5.92 30.59 0.18 -1.02 16 6 C -0.12 -1.62 5.19 30.59 0.16 -1.46 16 7 C 0.13 2.73 2.51 44.97 0.11 2.85 16 8 H 0.08 2.00 6.91 -2.39 -0.02 1.99 16 9 N -0.58 -15.15 2.76 -824.27 -2.28 -17.43 16 10 C 0.07 1.40 9.26 127.77 1.18 2.58 16 11 C 0.52 19.36 5.45 87.27 0.48 19.83 16 12 O -0.55 -23.46 16.44 -3.22 -0.05 -23.52 16 13 C 0.50 21.93 5.69 87.27 0.50 22.43 16 14 O -0.56 -29.71 16.54 -3.23 -0.05 -29.76 16 15 N -0.58 -24.09 2.97 -820.48 -2.44 -26.53 16 16 C 0.11 3.21 6.36 86.36 0.55 3.76 16 17 C -0.13 -4.02 6.08 30.68 0.19 -3.83 16 18 C -0.10 -3.93 5.11 30.62 0.16 -3.77 16 19 C 0.03 1.73 2.25 -11.46 -0.03 1.71 16 20 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 21 C -0.53 -28.81 8.56 25.60 0.22 -28.59 16 22 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 23 C 0.01 0.45 5.30 84.65 0.45 0.90 16 24 N -0.92 -56.00 11.40 21.44 0.24 -55.76 16 25 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 26 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 28 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 29 C 0.12 6.13 5.39 86.36 0.47 6.59 16 30 C -0.12 -2.02 4.48 30.58 0.14 -1.88 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 39 H 0.09 0.86 6.67 -2.39 -0.02 0.85 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.12 1.42 6.44 -2.39 -0.02 1.40 16 42 H 0.06 1.44 6.99 -2.39 -0.02 1.42 16 43 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.08 2.25 6.31 -2.39 -0.02 2.23 16 45 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 47 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 50 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 51 H 0.08 4.65 5.17 -2.39 -0.01 4.63 16 52 H 0.08 1.17 7.67 -2.39 -0.02 1.15 16 53 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -76.24 404.40 3.85 -72.39 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.87 Total: 17.62 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 5.54 Total: 16.99 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -4.47 Total: -99.71 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -0.11 Total: -53.28 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -76.24 3.85 -72.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328138105.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.402 kcal (2) G-P(sol) polarization free energy of solvation -76.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds