Wall clock time and date at job start Tue Mar 31 2020 20:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47251 * 2 1 4 4 C 1.52992 * 109.47416 * 240.00192 * 2 1 3 5 5 C 1.52998 * 109.47416 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47255 * 59.99861 * 5 4 2 7 7 C 1.53001 * 109.46862 * 299.99989 * 6 5 4 8 8 H 1.08999 * 109.47322 * 179.97438 * 7 6 5 9 9 N 1.46495 * 109.47390 * 300.00196 * 7 6 5 10 10 C 1.46501 * 119.99927 * 344.64900 * 9 7 6 11 11 C 1.34777 * 120.00414 * 164.65081 * 9 7 6 12 12 O 1.21348 * 119.99566 * 7.97402 * 11 9 7 13 13 C 1.49447 * 120.00204 * 187.97219 * 11 9 7 14 14 O 1.21355 * 119.99997 * 353.73651 * 13 11 9 15 15 N 1.34780 * 120.00358 * 173.73683 * 13 11 9 16 16 C 1.46925 * 120.62621 * 351.94615 * 15 13 11 17 17 C 1.53196 * 108.77342 * 233.63016 * 16 15 13 18 18 C 1.53031 * 109.33994 * 305.38115 * 17 16 15 19 19 C 1.53037 * 109.53926 * 61.31633 * 18 17 16 20 20 H 1.08995 * 109.49782 * 58.65412 * 19 18 17 21 21 C 1.50707 * 109.49962 * 178.71946 * 19 18 17 22 22 H 1.07996 * 119.99679 * 359.93075 * 21 19 18 23 23 C 1.37870 * 120.00156 * 179.66119 * 21 19 18 24 24 N 1.31519 * 120.00331 * 0.27236 * 23 21 19 25 25 Si 1.86801 * 119.99947 * 180.27082 * 23 21 19 26 26 H 1.48503 * 109.47191 * 60.00337 * 25 23 21 27 27 H 1.48501 * 109.46930 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47266 * 299.99981 * 25 23 21 29 29 C 1.46918 * 120.63235 * 171.96934 * 15 13 11 30 30 C 1.52998 * 109.47176 * 59.99963 * 7 6 5 31 31 H 1.09006 * 109.47041 * 300.00030 * 1 2 3 32 32 H 1.09007 * 109.47016 * 60.00083 * 1 2 3 33 33 H 1.09002 * 109.47251 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46842 * 299.99563 * 4 2 1 35 35 H 1.08994 * 109.47543 * 59.99689 * 4 2 1 36 36 H 1.09008 * 109.47497 * 179.97438 * 5 4 2 37 37 H 1.09002 * 109.47251 * 299.99808 * 5 4 2 38 38 H 1.08993 * 109.47477 * 180.02562 * 6 5 4 39 39 H 1.09002 * 109.47034 * 59.99815 * 6 5 4 40 40 H 1.09001 * 109.47923 * 215.07363 * 10 9 7 41 41 H 1.09010 * 109.46991 * 335.07320 * 10 9 7 42 42 H 1.08999 * 109.47272 * 95.06714 * 10 9 7 43 43 H 1.09003 * 109.58490 * 353.41407 * 16 15 13 44 44 H 1.08996 * 109.58503 * 113.84080 * 16 15 13 45 45 H 1.09000 * 109.49801 * 65.31640 * 17 16 15 46 46 H 1.09003 * 109.49322 * 185.37673 * 17 16 15 47 47 H 1.09007 * 109.43332 * 301.31105 * 18 17 16 48 48 H 1.08995 * 109.48896 * 181.35684 * 18 17 16 49 49 H 0.96996 * 120.00539 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.59038 * 6.57495 * 29 15 13 51 51 H 1.09003 * 109.70394 * 246.22657 * 29 15 13 52 52 H 1.09002 * 109.47251 * 59.99849 * 30 7 6 53 53 H 1.08998 * 109.47590 * 180.02562 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2495 6 6 4.0806 -1.4415 -0.0003 7 6 3.5706 -0.7202 1.2490 8 1 3.9339 -1.2340 2.1390 9 7 4.0583 0.6612 1.2487 10 6 5.1531 1.0512 0.3567 11 6 3.4999 1.5733 2.0689 12 8 2.6960 1.2231 2.9078 13 6 3.8707 3.0157 1.9453 14 8 4.7559 3.3517 1.1862 15 7 3.2220 3.9434 2.6768 16 6 2.0365 3.5804 3.4650 17 6 0.8852 4.5164 3.0836 18 6 1.3345 5.9690 3.2568 19 6 2.5170 6.2533 2.3280 20 1 2.2222 6.0651 1.2957 21 6 2.9386 7.6926 2.4763 22 1 2.4148 8.3405 3.1635 23 6 3.9963 8.1806 1.7389 24 7 4.6342 7.3916 0.9021 25 14 4.5236 9.9626 1.9285 26 1 4.9219 10.2139 3.3368 27 1 5.6759 10.2358 1.0325 28 1 3.3926 10.8546 1.5672 29 6 3.6867 5.3370 2.7008 30 6 2.0406 -0.7208 1.2493 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6767 -1.7489 -1.2491 35 1 1.6767 -0.2074 -2.1392 36 1 3.9334 -1.2348 -2.1393 37 1 3.9330 0.3072 -1.2497 38 1 5.1705 -1.4407 -0.0002 39 1 3.7176 -2.4693 0.0000 40 1 5.7766 1.7963 0.8509 41 1 5.7555 0.1751 0.1163 42 1 4.7419 1.4722 -0.5607 43 1 1.7559 2.5494 3.2493 44 1 2.2572 3.6866 4.5271 45 1 0.6054 4.3441 2.0443 46 1 0.0284 4.3206 3.7283 47 1 1.6371 6.1341 4.2910 48 1 0.5094 6.6368 3.0091 49 1 5.3781 7.7351 0.3830 50 1 4.4952 5.4651 1.9810 51 1 4.0437 5.5882 3.6996 52 1 1.6776 -1.7486 1.2495 53 1 1.6772 -0.2065 2.1390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328138106.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:10 Heat of formation + Delta-G solvation = -70.893369 kcal Electronic energy + Delta-G solvation = -32113.591385 eV Core-core repulsion = 28178.011011 eV Total energy + Delta-G solvation = -3935.580374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.34817 -40.60994 -38.88527 -38.58367 -36.17661 -35.15183 -33.50418 -33.03974 -31.70080 -31.44501 -28.36248 -27.52690 -26.94942 -26.48470 -24.74630 -23.55866 -23.16459 -21.99460 -21.44428 -20.40773 -19.86509 -18.60715 -17.83177 -17.79894 -17.30131 -16.98926 -16.55470 -16.46051 -15.78199 -15.64190 -15.44017 -15.37209 -14.93931 -14.65504 -14.59197 -14.36545 -14.28403 -13.98978 -13.90937 -13.53074 -13.40430 -13.27086 -13.18500 -13.04472 -12.86383 -12.72196 -12.54637 -12.44510 -12.32332 -12.27661 -12.05005 -11.76100 -11.71103 -11.45248 -11.32375 -11.15298 -11.07338 -10.96236 -10.87598 -10.54189 -9.84436 -9.72096 -9.45737 -8.11345 -6.28657 0.41168 1.35714 1.41992 1.44217 1.51341 2.18073 2.40416 2.48615 3.14886 3.20755 3.72944 3.79118 3.81352 4.10990 4.14880 4.15861 4.21399 4.25668 4.34200 4.43860 4.45408 4.56046 4.57795 4.58208 4.70856 4.76258 4.78429 4.80445 4.86491 4.89163 4.92601 4.99651 5.02525 5.06058 5.13112 5.18274 5.19440 5.21791 5.28351 5.30732 5.34254 5.36101 5.39105 5.50375 5.56300 5.58084 5.71910 5.84299 5.93959 6.02888 6.28577 6.41777 6.74834 6.83343 7.05200 7.41165 8.92115 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.003462 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.446944 B = 8085.323345 C = 8682.929204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.027 0.973 4 C -0.108 4.108 5 C -0.137 4.137 6 C -0.118 4.118 7 C 0.141 3.859 8 H 0.083 0.917 9 N -0.570 5.570 10 C 0.070 3.930 11 C 0.514 3.486 12 O -0.518 6.518 13 C 0.481 3.519 14 O -0.547 6.547 15 N -0.578 5.578 16 C 0.070 3.930 17 C -0.124 4.124 18 C -0.106 4.106 19 C 0.041 3.959 20 H -0.013 1.013 21 C -0.539 4.539 22 H 0.062 0.938 23 C 0.013 3.987 24 N -0.913 5.913 25 Si 0.958 3.042 26 H -0.268 1.268 27 H -0.287 1.287 28 H -0.270 1.270 29 C 0.122 3.878 30 C -0.136 4.136 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.056 0.944 43 H 0.140 0.860 44 H 0.070 0.930 45 H 0.045 0.955 46 H 0.099 0.901 47 H 0.057 0.943 48 H 0.053 0.947 49 H 0.261 0.739 50 H 0.086 0.914 51 H 0.042 0.958 52 H 0.095 0.905 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.009 -21.783 -1.207 22.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 H 0.046 0.954 4 C -0.146 4.146 5 C -0.174 4.174 6 C -0.155 4.155 7 C 0.040 3.960 8 H 0.101 0.899 9 N -0.302 5.302 10 C -0.072 4.072 11 C 0.297 3.703 12 O -0.397 6.397 13 C 0.264 3.736 14 O -0.426 6.426 15 N -0.310 5.310 16 C -0.050 4.050 17 C -0.162 4.162 18 C -0.143 4.143 19 C 0.022 3.978 20 H 0.005 0.995 21 C -0.577 4.577 22 H 0.080 0.920 23 C -0.186 4.186 24 N -0.551 5.551 25 Si 0.783 3.217 26 H -0.193 1.193 27 H -0.212 1.212 28 H -0.195 1.195 29 C 0.001 3.999 30 C -0.174 4.174 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.074 0.926 43 H 0.157 0.843 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.117 0.883 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.070 0.930 50 H 0.104 0.896 51 H 0.060 0.940 52 H 0.113 0.887 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.806 -21.814 -1.304 22.182 hybrid contribution 0.546 1.762 -0.160 1.852 sum -3.260 -20.052 -1.463 20.368 Atomic orbital electron populations 1.21772 0.94664 1.02398 1.01119 1.21020 0.95983 0.98013 0.95841 0.95389 1.21552 0.95692 1.01001 0.96320 1.21885 0.95791 1.01407 0.98351 1.21879 1.01625 1.00063 0.91920 1.21475 0.95088 0.79300 1.00171 0.89895 1.47854 1.34621 1.09878 1.37850 1.22405 0.88995 1.02034 0.93723 1.19889 0.81834 0.86289 0.82239 1.90333 1.34431 1.79880 1.35072 1.20663 0.83440 0.88003 0.81512 1.90693 1.32701 1.81999 1.37236 1.48448 1.28498 1.09421 1.44636 1.22931 0.83718 1.03271 0.95115 1.21908 0.98149 0.94874 1.01299 1.21541 0.97755 0.95665 0.99381 1.18872 0.91801 0.93634 0.93529 0.99501 1.21458 1.15917 0.96074 1.24265 0.92007 1.25865 0.96404 1.01853 0.94526 1.70057 1.21972 1.37035 1.26069 0.85609 0.77714 0.80091 0.78245 1.19268 1.21214 1.19471 1.21901 1.00665 0.77255 1.00095 1.22099 0.93956 1.02452 0.98897 0.93707 0.93159 0.90950 0.90155 0.92794 0.90134 0.92437 0.89812 0.87861 0.90886 0.87615 0.92596 0.84312 0.91184 0.93625 0.88276 0.92460 0.92824 0.92954 0.89556 0.93972 0.88691 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.19 71.98 0.66 -2.16 16 2 C -0.09 -1.95 2.53 -10.80 -0.03 -1.98 16 3 H 0.03 0.82 7.01 -2.39 -0.02 0.80 16 4 C -0.11 -1.84 5.20 30.59 0.16 -1.68 16 5 C -0.14 -2.17 5.58 30.59 0.17 -2.00 16 6 C -0.12 -1.54 4.92 30.60 0.15 -1.39 16 7 C 0.14 2.72 3.16 44.99 0.14 2.86 16 8 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 9 N -0.57 -15.14 2.39 -824.17 -1.97 -17.12 16 10 C 0.07 1.79 7.46 127.77 0.95 2.74 16 11 C 0.51 17.32 6.44 87.27 0.56 17.88 16 12 O -0.52 -17.13 10.58 -3.24 -0.03 -17.16 16 13 C 0.48 20.31 7.64 87.27 0.67 20.97 16 14 O -0.55 -25.97 12.68 -3.26 -0.04 -26.01 16 15 N -0.58 -25.11 2.97 -820.49 -2.44 -27.55 16 16 C 0.07 2.51 6.00 86.36 0.52 3.03 16 17 C -0.12 -4.30 6.08 30.67 0.19 -4.12 16 18 C -0.11 -4.37 5.11 30.62 0.16 -4.22 16 19 C 0.04 2.12 2.25 -11.46 -0.03 2.10 16 20 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 21 C -0.54 -30.03 8.57 25.60 0.22 -29.81 16 22 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 23 C 0.01 0.74 5.30 84.65 0.45 1.19 16 24 N -0.91 -54.89 11.39 21.45 0.24 -54.65 16 25 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 27 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 28 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 29 C 0.12 6.25 5.41 86.36 0.47 6.72 16 30 C -0.14 -2.73 4.30 30.59 0.13 -2.60 16 31 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.06 1.19 4.49 -2.39 -0.01 1.18 16 38 H 0.08 0.93 6.39 -2.39 -0.02 0.92 16 39 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 2.33 5.76 -2.39 -0.01 2.32 16 41 H 0.11 1.85 5.81 -2.38 -0.01 1.83 16 42 H 0.06 1.56 6.23 -2.39 -0.01 1.54 16 43 H 0.14 4.72 4.26 -52.18 -0.22 4.50 16 44 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 47 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 48 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 49 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 50 H 0.09 5.10 5.11 -2.39 -0.01 5.09 16 51 H 0.04 2.13 8.14 -2.39 -0.02 2.12 16 52 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 53 H 0.08 1.96 5.45 -2.39 -0.01 1.95 16 Total: -1.00 -67.72 382.86 4.01 -63.71 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.68 Total: 25.06 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 5.54 Total: 7.54 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -4.17 Total: -99.31 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -0.08 Total: -43.17 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -67.72 4.01 -63.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328138106.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.182 kcal (2) G-P(sol) polarization free energy of solvation -67.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds