Wall clock time and date at job start Tue Mar 31 2020 20:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46718 * 2 1 4 4 C 1.52999 * 109.46782 * 240.00764 * 2 1 3 5 5 C 1.53005 * 109.46782 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47643 * 59.99660 * 5 4 2 7 7 C 1.53001 * 109.47026 * 300.00268 * 6 5 4 8 8 H 1.08998 * 109.47137 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.47084 * 299.99974 * 7 6 5 10 10 C 1.46498 * 119.99826 * 353.49532 * 9 7 6 11 11 C 1.34773 * 119.99948 * 173.49796 * 9 7 6 12 12 O 1.21350 * 120.00518 * 6.85373 * 11 9 7 13 13 C 1.49456 * 120.00069 * 186.85101 * 11 9 7 14 14 O 1.21352 * 119.99695 * 6.56754 * 13 11 9 15 15 N 1.34773 * 120.00032 * 186.57046 * 13 11 9 16 16 C 1.46925 * 120.63488 * 9.84692 * 15 13 11 17 17 C 1.53188 * 108.77603 * 126.36831 * 16 15 13 18 18 C 1.53036 * 109.31320 * 54.63780 * 17 16 15 19 19 C 1.53039 * 109.53739 * 298.63152 * 18 17 16 20 20 H 1.08997 * 109.49879 * 301.38120 * 19 18 17 21 21 C 1.50703 * 109.49694 * 181.31640 * 19 18 17 22 22 H 1.07997 * 120.00057 * 359.97438 * 21 19 18 23 23 C 1.37882 * 119.99800 * 180.02562 * 21 19 18 24 24 N 1.31513 * 120.00142 * 359.97438 * 23 21 19 25 25 Si 1.86797 * 119.99716 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47544 * 59.99833 * 25 23 21 27 27 H 1.48500 * 109.47135 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.47319 * 299.99744 * 25 23 21 29 29 C 1.46930 * 120.62850 * 189.56573 * 15 13 11 30 30 C 1.52996 * 109.47135 * 120.00268 * 2 1 3 31 31 H 1.09000 * 109.46718 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46995 * 299.99528 * 1 2 3 33 33 H 1.08998 * 109.47375 * 59.99547 * 1 2 3 34 34 H 1.08998 * 109.47419 * 59.99716 * 4 2 1 35 35 H 1.08997 * 109.47364 * 299.99276 * 4 2 1 36 36 H 1.08999 * 109.46995 * 179.97438 * 5 4 2 37 37 H 1.09000 * 109.46718 * 299.99236 * 5 4 2 38 38 H 1.09001 * 109.47026 * 59.99622 * 6 5 4 39 39 H 1.08991 * 109.47482 * 180.02562 * 6 5 4 40 40 H 1.09000 * 109.47341 * 94.22189 * 10 9 7 41 41 H 1.09005 * 109.46791 * 214.22335 * 10 9 7 42 42 H 1.08998 * 109.47114 * 334.21948 * 10 9 7 43 43 H 1.09003 * 109.58384 * 246.15875 * 16 15 13 44 44 H 1.09007 * 109.58137 * 6.58122 * 16 15 13 45 45 H 1.09004 * 109.49506 * 174.58962 * 17 16 15 46 46 H 1.08994 * 109.49763 * 294.64946 * 17 16 15 47 47 H 1.09000 * 109.46332 * 58.65385 * 18 17 16 48 48 H 1.08999 * 109.45999 * 178.61268 * 18 17 16 49 49 H 0.96997 * 120.00084 * 180.02562 * 24 23 21 50 50 H 1.09000 * 109.58800 * 353.42176 * 29 15 13 51 51 H 1.08998 * 109.58765 * 113.84069 * 29 15 13 52 52 H 1.08997 * 109.47180 * 60.00621 * 30 2 1 53 53 H 1.08999 * 109.47346 * 299.99990 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5700 -0.7205 -1.2497 6 6 4.0806 -1.4415 -0.0006 7 6 3.5706 -0.7203 1.2488 8 1 3.9341 -1.2342 2.1387 9 7 4.0584 0.6611 1.2485 10 6 5.0137 1.1004 0.2284 11 6 3.6283 1.5277 2.1868 12 8 2.9363 1.1357 3.1034 13 6 4.0035 2.9717 2.0985 14 8 4.5933 3.3867 1.1225 15 7 3.6869 3.8129 3.1028 16 6 3.1699 3.2961 4.3773 17 6 4.0314 3.8464 5.5182 18 6 4.0730 5.3736 5.4298 19 6 4.7065 5.7923 4.1011 20 1 5.7120 5.3775 4.0308 21 6 4.7765 7.2960 4.0289 22 1 4.4059 7.8938 4.8485 23 6 5.3128 7.9085 2.9161 24 7 5.7637 7.1806 1.9179 25 14 5.4002 9.7723 2.8270 26 1 6.2256 10.2836 3.9507 27 1 6.0149 10.1780 1.5375 28 1 4.0301 10.3373 2.9222 29 6 3.8580 5.2637 2.9460 30 6 2.0400 -0.7213 1.2492 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.6766 -0.2072 -2.1393 35 1 1.6767 -1.7488 -1.2494 36 1 3.9333 -1.2346 -2.1395 37 1 3.9329 0.3073 -1.2499 38 1 3.7177 -2.4693 -0.0004 39 1 5.1706 -1.4406 -0.0006 40 1 4.4742 1.5529 -0.6037 41 1 5.6955 1.8328 0.6607 42 1 5.5820 0.2424 -0.1306 43 1 2.1374 3.6190 4.5106 44 1 3.2173 2.2071 4.3761 45 1 3.6016 3.5489 6.4747 46 1 5.0429 3.4490 5.4346 47 1 3.0588 5.7686 5.4890 48 1 4.6652 5.7692 6.2550 49 1 6.1413 7.6115 1.1352 50 1 4.3590 5.4726 2.0009 51 1 2.8827 5.7503 2.9602 52 1 1.6768 -1.7490 1.2491 53 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328138107.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:14 Heat of formation + Delta-G solvation = -71.452480 kcal Electronic energy + Delta-G solvation = -31822.257109 eV Core-core repulsion = 27886.652490 eV Total energy + Delta-G solvation = -3935.604619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.32080 -40.64752 -38.96150 -38.57139 -36.14368 -35.15931 -33.50202 -33.07320 -31.75076 -31.48876 -28.34328 -27.52658 -26.96286 -26.56047 -24.75424 -23.55687 -23.11354 -22.00334 -21.39659 -20.45163 -19.85863 -18.59965 -17.87812 -17.83741 -17.31393 -16.96285 -16.53457 -16.40309 -15.85744 -15.58553 -15.45928 -15.33715 -14.94418 -14.71470 -14.54569 -14.42123 -14.31878 -14.02328 -13.93687 -13.49827 -13.30967 -13.27928 -13.10535 -13.05187 -12.86603 -12.76294 -12.56119 -12.44178 -12.35448 -12.28211 -12.07255 -11.74602 -11.72582 -11.50545 -11.31789 -11.15094 -11.02220 -10.96741 -10.90649 -10.53875 -10.02441 -9.67331 -9.46530 -8.11237 -6.28423 0.41167 1.35213 1.42106 1.44166 1.51419 2.15852 2.40164 2.47554 3.15429 3.21801 3.71152 3.78239 3.80826 4.10276 4.12771 4.15587 4.18465 4.26791 4.33582 4.44064 4.45463 4.55274 4.56796 4.58039 4.71194 4.74206 4.75668 4.80360 4.84784 4.87726 4.90776 4.98345 5.01973 5.05657 5.10476 5.17842 5.18942 5.22277 5.28448 5.30215 5.32769 5.34975 5.38104 5.48935 5.54966 5.56609 5.68993 5.84729 5.94250 6.00249 6.28763 6.40957 6.73262 6.83428 7.04095 7.41326 8.92186 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016999 B = 0.003246 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.805699 B = 8622.673350 C = 9234.865986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.032 0.968 4 C -0.106 4.106 5 C -0.146 4.146 6 C -0.117 4.117 7 C 0.141 3.859 8 H 0.082 0.918 9 N -0.569 5.569 10 C 0.076 3.924 11 C 0.513 3.487 12 O -0.522 6.522 13 C 0.481 3.519 14 O -0.546 6.546 15 N -0.580 5.580 16 C 0.076 3.924 17 C -0.125 4.125 18 C -0.106 4.106 19 C 0.040 3.960 20 H -0.011 1.011 21 C -0.539 4.539 22 H 0.062 0.938 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 0.958 3.042 26 H -0.269 1.269 27 H -0.287 1.287 28 H -0.268 1.268 29 C 0.123 3.877 30 C -0.130 4.130 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.107 0.893 43 H 0.069 0.931 44 H 0.135 0.865 45 H 0.100 0.900 46 H 0.048 0.952 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.261 0.739 50 H 0.086 0.914 51 H 0.040 0.960 52 H 0.095 0.905 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.661 -21.193 -4.063 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.050 0.950 4 C -0.144 4.144 5 C -0.183 4.183 6 C -0.155 4.155 7 C 0.040 3.960 8 H 0.100 0.900 9 N -0.301 5.301 10 C -0.066 4.066 11 C 0.296 3.704 12 O -0.401 6.401 13 C 0.264 3.736 14 O -0.424 6.424 15 N -0.312 5.312 16 C -0.045 4.045 17 C -0.163 4.163 18 C -0.144 4.144 19 C 0.021 3.979 20 H 0.007 0.993 21 C -0.577 4.577 22 H 0.080 0.920 23 C -0.187 4.187 24 N -0.551 5.551 25 Si 0.783 3.217 26 H -0.194 1.194 27 H -0.212 1.212 28 H -0.193 1.193 29 C 0.002 3.998 30 C -0.167 4.167 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.125 0.875 43 H 0.087 0.913 44 H 0.152 0.848 45 H 0.118 0.882 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.104 0.896 51 H 0.058 0.942 52 H 0.114 0.886 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.631 -21.186 -4.288 22.610 hybrid contribution 0.265 1.781 -0.194 1.812 sum -6.366 -19.405 -4.482 20.909 Atomic orbital electron populations 1.21779 0.94747 1.02403 1.01062 1.21050 0.95900 0.98273 0.95818 0.94952 1.21534 0.95695 1.00925 0.96218 1.22089 0.95871 1.02211 0.98168 1.21853 1.01537 1.00117 0.91952 1.21459 0.94844 0.79325 1.00369 0.90046 1.47866 1.42897 1.11071 1.28304 1.22386 0.92092 1.01122 0.90976 1.19940 0.81261 0.86275 0.82948 1.90415 1.39054 1.78493 1.32172 1.20614 0.80826 0.88194 0.83949 1.90719 1.40269 1.78397 1.33065 1.48445 1.60844 1.07728 1.14147 1.22803 0.97220 1.03229 0.81215 1.21925 0.99698 0.95751 0.98953 1.21543 1.00244 0.95005 0.97576 1.18801 0.93006 0.94620 0.91443 0.99304 1.21457 1.40872 0.92122 1.03266 0.92012 1.25866 0.94571 1.02857 0.95380 1.70052 1.40875 1.36783 1.07372 0.85609 0.78650 0.80151 0.77250 1.19450 1.21214 1.19323 1.21819 0.98440 0.75697 1.03871 1.21996 0.94136 1.02338 0.98277 0.91007 0.94112 0.92784 0.92414 0.90344 0.89992 0.91335 0.87875 0.89919 0.91885 0.92061 0.87456 0.91265 0.84837 0.88201 0.93341 0.92536 0.92719 0.92955 0.89551 0.94168 0.88612 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.19 71.98 0.66 -2.03 16 2 C -0.09 -1.90 2.56 -10.79 -0.03 -1.93 16 3 H 0.03 0.90 7.42 -2.39 -0.02 0.88 16 4 C -0.11 -1.65 5.20 30.60 0.16 -1.50 16 5 C -0.15 -2.12 5.41 30.59 0.17 -1.96 16 6 C -0.12 -1.51 4.91 30.59 0.15 -1.36 16 7 C 0.14 2.76 3.01 45.01 0.14 2.89 16 8 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 9 N -0.57 -15.19 2.29 -824.05 -1.88 -17.07 16 10 C 0.08 1.94 7.18 127.77 0.92 2.85 16 11 C 0.51 17.42 6.98 87.27 0.61 18.03 16 12 O -0.52 -17.64 11.16 -3.25 -0.04 -17.67 16 13 C 0.48 20.37 7.52 87.27 0.66 21.03 16 14 O -0.55 -25.95 12.88 -3.25 -0.04 -25.99 16 15 N -0.58 -25.22 2.98 -821.30 -2.45 -27.66 16 16 C 0.08 2.72 5.95 86.36 0.51 3.23 16 17 C -0.13 -4.31 6.08 30.67 0.19 -4.12 16 18 C -0.11 -4.37 5.11 30.62 0.16 -4.21 16 19 C 0.04 2.10 2.24 -11.61 -0.03 2.07 16 20 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 21 C -0.54 -29.98 8.56 25.60 0.22 -29.76 16 22 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 23 C 0.01 0.73 5.30 84.66 0.45 1.18 16 24 N -0.91 -54.74 11.39 21.45 0.24 -54.50 16 25 Si 0.96 44.12 29.54 68.60 2.03 46.14 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 28 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 29 C 0.12 6.30 5.39 86.22 0.46 6.77 16 30 C -0.13 -2.59 4.42 30.61 0.14 -2.46 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 1.28 3.95 -2.39 -0.01 1.27 16 38 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 0.93 6.64 -2.39 -0.02 0.91 16 40 H 0.06 1.70 6.30 -2.39 -0.02 1.69 16 41 H 0.06 2.00 6.01 -2.38 -0.01 1.98 16 42 H 0.11 1.90 5.42 -2.39 -0.01 1.88 16 43 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.13 4.56 4.39 -40.98 -0.18 4.38 16 45 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 46 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 50 H 0.09 5.11 5.12 -2.39 -0.01 5.09 16 51 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 52 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 53 H 0.06 1.62 5.95 -2.39 -0.01 1.61 16 Total: -1.00 -67.82 384.08 4.11 -63.70 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.73 Total: 24.30 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 5.53 Total: 8.75 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -4.09 Total: -99.24 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -0.08 Total: -43.66 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -67.82 4.11 -63.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328138107.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.750 kcal (2) G-P(sol) polarization free energy of solvation -67.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds