Wall clock time and date at job start Tue Mar 31 2020 20:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.52721 * 2 1 4 4 C 1.53193 * 109.49825 * 239.91543 * 2 1 3 5 5 N 1.46926 * 108.89153 * 185.48384 * 4 2 1 6 6 C 1.34778 * 120.63066 * 233.56057 * 5 4 2 7 7 O 1.21345 * 119.99681 * 174.95796 * 6 5 4 8 8 C 1.49451 * 120.00026 * 354.94953 * 6 5 4 9 9 O 1.21349 * 119.99470 * 85.48929 * 8 6 5 10 10 N 1.34769 * 120.00385 * 265.49129 * 8 6 5 11 11 C 1.46931 * 120.63093 * 4.77193 * 10 8 6 12 12 C 1.52763 * 109.00775 * 233.58574 * 11 10 8 13 13 C 1.53036 * 109.38478 * 305.59104 * 12 11 10 14 14 C 1.53038 * 109.54171 * 61.24004 * 13 12 11 15 15 H 1.08993 * 109.50089 * 58.58652 * 14 13 12 16 16 C 1.50707 * 109.52495 * 178.66964 * 14 13 12 17 17 H 1.07997 * 119.99695 * 359.85064 * 16 14 13 18 18 C 1.37876 * 119.99508 * 179.85463 * 16 14 13 19 19 N 1.31511 * 120.00623 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99495 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46904 * 90.00055 * 20 18 16 22 22 H 1.48503 * 109.47176 * 209.99736 * 20 18 16 23 23 H 1.48502 * 109.47375 * 329.99869 * 20 18 16 24 24 C 1.46927 * 120.63294 * 185.05637 * 10 8 6 25 25 C 1.46927 * 118.73980 * 53.54351 * 5 4 2 26 26 C 1.53196 * 108.77367 * 306.38765 * 25 5 4 27 27 C 1.52999 * 109.49874 * 174.58524 * 26 25 5 28 28 C 1.53006 * 109.49557 * 294.65272 * 26 25 5 29 29 C 1.53037 * 109.31312 * 54.63261 * 26 25 5 30 30 H 1.09001 * 109.47062 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47102 * 300.08054 * 1 2 3 32 32 H 1.08998 * 109.46863 * 60.07998 * 1 2 3 33 33 H 1.08998 * 109.58136 * 65.62863 * 4 2 1 34 34 H 1.08997 * 109.58475 * 305.34448 * 4 2 1 35 35 H 1.09000 * 109.58525 * 353.42199 * 11 10 8 36 36 H 1.08995 * 109.58416 * 113.85016 * 11 10 8 37 37 H 1.08999 * 109.56699 * 185.55188 * 12 11 10 38 38 H 1.08999 * 109.38536 * 65.51252 * 12 11 10 39 39 H 1.08997 * 109.45850 * 301.21630 * 13 12 11 40 40 H 1.09003 * 109.45818 * 181.26095 * 13 12 11 41 41 H 0.97000 * 120.00001 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.58892 * 246.15616 * 24 10 8 43 43 H 1.09003 * 109.58370 * 6.43285 * 24 10 8 44 44 H 1.08994 * 109.58710 * 66.17047 * 25 5 4 45 45 H 1.08996 * 109.58586 * 186.45914 * 25 5 4 46 46 H 1.09005 * 109.46839 * 60.00264 * 27 26 25 47 47 H 1.09000 * 109.47010 * 179.97438 * 27 26 25 48 48 H 1.08992 * 109.47004 * 300.00419 * 27 26 25 49 49 H 1.08996 * 109.47233 * 60.00213 * 28 26 25 50 50 H 1.08997 * 109.46911 * 179.97438 * 28 26 25 51 51 H 1.09003 * 109.46735 * 299.99771 * 28 26 25 52 52 H 1.09000 * 109.46204 * 58.65696 * 29 26 25 53 53 H 1.09000 * 109.46315 * 178.62567 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2495 5 7 3.5045 -0.8321 -1.1713 6 6 4.2807 -0.3908 -2.1810 7 8 5.4887 -0.4014 -2.0668 8 6 3.6535 0.1113 -3.4412 9 8 3.2944 1.2677 -3.5212 10 7 3.4867 -0.7201 -4.4886 11 6 3.8196 -2.1465 -4.3727 12 6 4.7790 -2.5267 -5.4991 13 6 4.1653 -2.1314 -6.8441 14 6 3.9485 -0.6169 -6.8826 15 1 4.9011 -0.1091 -6.7323 16 6 3.3744 -0.2241 -8.2195 17 1 3.1853 -0.9786 -8.9686 18 6 3.0909 1.0986 -8.4861 19 7 3.3208 2.0173 -7.5736 20 14 2.3800 1.5856 -10.1435 21 1 0.8971 1.5386 -10.0791 22 1 2.8173 2.9633 -10.4841 23 1 2.8605 0.6421 -11.1848 24 6 2.9743 -0.2163 -5.7702 25 6 4.1055 -1.4302 0.0286 26 6 3.5742 -0.6966 1.2641 27 6 4.0833 -1.3911 2.5287 28 6 4.0622 0.7535 1.2461 29 6 2.0441 -0.7214 1.2484 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5151 0.8892 32 1 -0.3633 0.5126 -0.8907 33 1 1.7638 -0.1580 -2.1388 34 1 1.6033 -1.7207 -1.2992 35 1 4.2959 -2.3335 -3.4102 36 1 2.9103 -2.7418 -4.4546 37 1 4.9548 -3.6022 -5.4814 38 1 5.7241 -2.0012 -5.3621 39 1 3.2087 -2.6385 -6.9697 40 1 4.8389 -2.4224 -7.6501 41 1 3.1209 2.9478 -7.7611 42 1 1.9946 -0.6509 -5.9683 43 1 2.8906 0.8697 -5.7286 44 1 3.8356 -2.4846 0.0857 45 1 5.1901 -1.3325 -0.0186 46 1 5.1732 -1.3756 2.5380 47 1 3.7053 -0.8685 3.4074 48 1 3.7345 -2.4237 2.5415 49 1 3.6982 1.2482 0.3457 50 1 3.6835 1.2751 2.1251 51 1 5.1520 0.7701 1.2547 52 1 1.6978 -1.7549 1.2365 53 1 1.6636 -0.2213 2.1390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328193799.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:39 Heat of formation + Delta-G solvation = -107.556869 kcal Electronic energy + Delta-G solvation = -31662.731269 eV Core-core repulsion = 27725.561046 eV Total energy + Delta-G solvation = -3937.170223 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.26179 -40.64212 -39.21953 -38.46013 -35.64433 -35.33426 -34.64328 -33.57830 -31.70752 -28.81245 -28.24460 -27.70925 -27.45067 -26.97613 -26.27467 -23.79193 -23.48500 -21.83051 -21.23231 -19.93183 -19.46528 -19.05965 -18.23426 -18.00255 -17.58354 -16.59632 -16.29408 -16.09751 -15.98225 -15.70781 -15.44965 -15.32031 -15.10933 -14.78739 -14.57923 -14.43747 -14.37137 -13.99145 -13.93595 -13.65819 -13.27400 -13.09029 -12.98970 -12.89817 -12.87493 -12.74681 -12.60653 -12.50979 -12.34564 -12.32872 -12.27101 -11.88367 -11.86751 -11.83523 -11.71394 -11.32235 -11.20902 -11.11437 -10.99839 -10.60763 -10.51444 -9.83223 -9.65201 -8.12544 -6.29992 0.94563 1.11706 1.39125 1.41739 1.44522 1.53257 2.32520 2.42445 3.08067 3.17007 3.56673 3.72711 3.78131 3.83682 3.88327 4.06052 4.13103 4.22940 4.24342 4.37500 4.48460 4.51364 4.59093 4.59915 4.64984 4.69698 4.70535 4.74723 4.76001 4.84020 4.86977 4.95057 5.02388 5.05281 5.10170 5.10852 5.15326 5.18188 5.20038 5.25580 5.27651 5.33090 5.39571 5.40362 5.46572 5.52775 5.56741 5.84053 5.92137 5.94271 6.25910 6.30683 6.62256 6.78838 6.87155 7.40750 8.91367 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018123 B = 0.003199 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.614474 B = 8749.510347 C = 9332.721526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 H 0.054 0.946 4 C 0.104 3.896 5 N -0.581 5.581 6 C 0.525 3.475 7 O -0.550 6.550 8 C 0.499 3.501 9 O -0.565 6.565 10 N -0.585 5.585 11 C 0.105 3.895 12 C -0.128 4.128 13 C -0.102 4.102 14 C 0.035 3.965 15 H -0.019 1.019 16 C -0.532 4.532 17 H 0.067 0.933 18 C 0.009 3.991 19 N -0.918 5.918 20 Si 0.961 3.039 21 H -0.271 1.271 22 H -0.291 1.291 23 H -0.262 1.262 24 C 0.125 3.875 25 C 0.113 3.887 26 C -0.076 4.076 27 C -0.132 4.132 28 C -0.141 4.141 29 C -0.094 4.094 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.260 0.740 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.076 0.924 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.076 0.924 49 H 0.028 0.972 50 H 0.070 0.930 51 H 0.043 0.957 52 H 0.089 0.911 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 -13.476 21.340 25.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 H 0.073 0.927 4 C -0.018 4.018 5 N -0.314 5.314 6 C 0.308 3.692 7 O -0.428 6.428 8 C 0.282 3.718 9 O -0.443 6.443 10 N -0.317 5.317 11 C -0.016 4.016 12 C -0.166 4.166 13 C -0.140 4.140 14 C 0.016 3.984 15 H -0.001 1.001 16 C -0.570 4.570 17 H 0.085 0.915 18 C -0.191 4.191 19 N -0.557 5.557 20 Si 0.786 3.214 21 H -0.197 1.197 22 H -0.217 1.217 23 H -0.187 1.187 24 C 0.004 3.996 25 C -0.008 4.008 26 C -0.077 4.077 27 C -0.189 4.189 28 C -0.199 4.199 29 C -0.132 4.132 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.100 0.900 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.124 0.876 45 H 0.094 0.906 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.095 0.905 49 H 0.047 0.953 50 H 0.089 0.911 51 H 0.062 0.938 52 H 0.108 0.892 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.119 -12.717 21.375 25.394 hybrid contribution 0.150 1.493 -1.386 2.043 sum -4.969 -11.224 19.990 23.457 Atomic orbital electron populations 1.21721 0.92583 1.03257 1.02161 1.21529 0.97253 0.99329 0.94497 0.92749 1.22117 0.77517 1.02824 0.99309 1.48153 1.07774 1.58167 1.17265 1.20124 0.86986 0.77288 0.84816 1.90735 1.14645 1.55524 1.81898 1.20639 0.79179 0.86308 0.85679 1.90777 1.51228 1.19100 1.83238 1.48610 1.61328 1.09991 1.11780 1.21944 1.00617 0.79341 0.99718 1.21845 0.97601 1.02640 0.94513 1.21508 1.00580 0.95718 0.96196 1.18948 0.93254 0.93037 0.93166 1.00115 1.21487 1.42716 0.93000 0.99842 0.91457 1.25929 0.95866 0.96824 1.00447 1.70087 1.48632 1.01435 1.35525 0.85515 0.78779 0.77225 0.79902 1.19681 1.21674 1.18661 1.21926 0.96519 1.01263 0.79907 1.22094 0.98923 0.97833 0.81922 1.20939 0.96676 0.95006 0.95055 1.21748 1.01062 1.01041 0.95089 1.21884 1.00352 0.96509 1.01120 1.21652 0.92706 1.01961 0.96845 0.90473 0.91028 0.93760 0.92578 0.87390 0.90011 0.87822 0.87191 0.94147 0.91251 0.92650 0.93110 0.92515 0.90407 0.87646 0.90563 0.92769 0.91190 0.90547 0.95294 0.91089 0.93828 0.89218 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.21 71.98 0.66 -1.33 16 2 C -0.11 -1.93 2.53 -10.70 -0.03 -1.95 16 3 H 0.05 1.29 6.35 -2.39 -0.02 1.28 16 4 C 0.10 2.31 5.60 86.36 0.48 2.79 16 5 N -0.58 -15.23 2.41 -820.49 -1.98 -17.21 16 6 C 0.53 19.51 5.47 87.27 0.48 19.98 16 7 O -0.55 -23.35 16.51 -3.23 -0.05 -23.41 16 8 C 0.50 22.16 5.60 87.27 0.49 22.65 16 9 O -0.56 -30.17 16.34 -3.24 -0.05 -30.22 16 10 N -0.58 -24.33 2.98 -821.31 -2.45 -26.78 16 11 C 0.11 3.22 6.33 86.22 0.55 3.76 16 12 C -0.13 -4.04 6.06 30.53 0.19 -3.86 16 13 C -0.10 -3.93 5.11 30.62 0.16 -3.77 16 14 C 0.04 1.79 2.25 -11.46 -0.03 1.76 16 15 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 16 C -0.53 -29.02 8.57 25.60 0.22 -28.80 16 17 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 18 C 0.01 0.48 5.30 84.65 0.45 0.93 16 19 N -0.92 -56.20 11.39 21.45 0.24 -55.96 16 20 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 24 C 0.13 6.20 5.39 86.36 0.47 6.67 16 25 C 0.11 2.20 5.12 86.36 0.44 2.64 16 26 C -0.08 -1.17 0.77 -52.10 -0.04 -1.21 16 27 C -0.13 -1.35 8.48 71.98 0.61 -0.74 16 28 C -0.14 -2.97 7.99 71.98 0.58 -2.39 16 29 C -0.09 -1.17 4.00 30.63 0.12 -1.04 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 1.65 6.23 -2.39 -0.01 1.63 16 34 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 2.28 6.31 -2.39 -0.02 2.26 16 36 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.06 2.66 8.14 -2.39 -0.02 2.65 16 43 H 0.08 4.65 5.15 -2.39 -0.01 4.64 16 44 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.08 1.82 7.00 -2.39 -0.02 1.80 16 46 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 47 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.03 0.78 5.98 -2.39 -0.01 0.77 16 50 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 51 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 53 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -76.89 402.05 4.40 -72.49 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.87 Total: 18.91 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 5.79 Total: 16.08 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -4.18 Total: -99.94 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -0.11 Total: -53.63 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -76.89 4.40 -72.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328193799.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.063 kcal (2) G-P(sol) polarization free energy of solvation -76.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds