Wall clock time and date at job start Tue Mar 31 2020 20:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.49919 * 2 1 4 4 C 1.53195 * 109.50069 * 120.06889 * 2 1 3 5 5 N 1.46922 * 108.77752 * 174.58610 * 4 2 1 6 6 C 1.34776 * 120.63140 * 126.36790 * 5 4 2 7 7 O 1.21349 * 119.99966 * 185.05580 * 6 5 4 8 8 C 1.49446 * 120.00041 * 5.05198 * 6 5 4 9 9 O 1.21348 * 120.00455 * 274.58033 * 8 6 5 10 10 N 1.34783 * 119.99963 * 94.58049 * 8 6 5 11 11 C 1.46928 * 120.62908 * 354.92595 * 10 8 6 12 12 C 1.53185 * 108.77659 * 126.41083 * 11 10 8 13 13 C 1.53112 * 109.32718 * 54.63723 * 12 11 10 14 14 C 1.53041 * 109.50160 * 298.65320 * 13 12 11 15 15 H 1.08999 * 109.50115 * 301.38002 * 14 13 12 16 16 C 1.50704 * 109.49892 * 181.31544 * 14 13 12 17 17 H 1.08003 * 119.99405 * 0.06508 * 16 14 13 18 18 C 1.37868 * 120.00508 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99644 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 120.00313 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47107 * 89.99972 * 20 18 16 22 22 H 1.48510 * 109.47191 * 210.00155 * 20 18 16 23 23 H 1.48505 * 109.47168 * 329.99751 * 20 18 16 24 24 C 1.46925 * 120.63238 * 174.94935 * 10 8 6 25 25 C 1.46929 * 118.73962 * 306.64379 * 5 4 2 26 26 C 1.52760 * 109.00767 * 53.30710 * 25 5 4 27 27 C 1.53006 * 109.56558 * 185.55474 * 26 25 5 28 28 C 1.52999 * 109.38803 * 65.52046 * 26 25 5 29 29 C 1.53041 * 109.38545 * 305.58991 * 26 25 5 30 30 H 1.08997 * 109.46794 * 299.93291 * 1 2 3 31 31 H 1.09003 * 109.47386 * 59.93340 * 1 2 3 32 32 H 1.09002 * 109.47305 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.58254 * 54.79685 * 4 2 1 34 34 H 1.09000 * 109.69746 * 294.44603 * 4 2 1 35 35 H 1.09002 * 109.58826 * 246.20343 * 11 10 8 36 36 H 1.09003 * 109.58283 * 6.62414 * 11 10 8 37 37 H 1.08999 * 109.50026 * 174.58199 * 12 11 10 38 38 H 1.08997 * 109.49973 * 294.68921 * 12 11 10 39 39 H 1.08999 * 109.50621 * 178.63164 * 13 12 11 40 40 H 1.08997 * 109.45240 * 58.64951 * 13 12 11 41 41 H 0.97006 * 119.99813 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.58621 * 113.79930 * 24 10 8 43 43 H 1.09001 * 109.58230 * 353.37306 * 24 10 8 44 44 H 1.08996 * 109.59174 * 173.14750 * 25 5 4 45 45 H 1.09005 * 109.58345 * 293.57321 * 25 5 4 46 46 H 1.08996 * 109.47297 * 179.97438 * 27 26 25 47 47 H 1.08996 * 109.47051 * 299.96720 * 27 26 25 48 48 H 1.09004 * 109.46661 * 59.96599 * 27 26 25 49 49 H 1.09008 * 109.47023 * 300.14276 * 28 26 25 50 50 H 1.08997 * 109.47225 * 60.13569 * 28 26 25 51 51 H 1.08993 * 109.47489 * 180.14342 * 28 26 25 52 52 H 1.09001 * 109.46168 * 301.21793 * 29 26 25 53 53 H 1.09005 * 109.44939 * 181.25408 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 1.2497 5 7 3.5046 -0.8289 1.1697 6 6 4.2812 -0.3851 2.1779 7 8 5.4891 -0.3931 2.0621 8 6 3.6547 0.1169 3.4385 9 8 3.2921 1.2722 3.5176 10 7 3.4923 -0.7137 4.4875 11 6 3.8233 -2.1405 4.3709 12 6 4.7905 -2.5160 5.4978 13 6 4.1778 -2.1208 6.8442 14 6 3.9572 -0.6068 6.8805 15 1 4.9084 -0.0968 6.7283 16 6 3.3841 -0.2139 8.2178 17 1 3.1969 -0.9683 8.9676 18 6 3.0997 1.1085 8.4843 19 7 3.3281 2.0271 7.5712 20 14 2.3901 1.5956 10.1421 21 1 3.4969 1.9019 11.0836 22 1 1.5317 2.7965 9.9796 23 1 1.5774 0.4756 10.6811 24 6 2.9805 -0.2097 5.7692 25 6 4.1055 -1.4216 -0.0329 26 6 3.5708 -0.6953 -1.2659 27 6 4.0797 -1.3900 -2.5306 28 6 4.0552 0.7559 -1.2504 29 6 2.0408 -0.7234 -1.2482 30 1 -0.3633 0.5128 0.8906 31 1 -0.3634 0.5149 -0.8894 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6053 -1.7213 1.2984 34 1 1.7637 -0.1596 2.1402 35 1 2.9136 -2.7348 4.4568 36 1 4.2952 -2.3284 3.4064 37 1 4.9688 -3.5911 5.4811 38 1 5.7338 -1.9879 5.3587 39 1 4.8530 -2.4088 7.6499 40 1 3.2226 -2.6301 6.9717 41 1 3.1283 2.9577 7.7588 42 1 2.0021 -0.6466 5.9692 43 1 2.8965 0.8763 5.7274 44 1 5.1895 -1.3160 0.0102 45 1 3.8411 -2.4775 -0.0910 46 1 3.6970 -0.8709 -3.4093 47 1 5.1694 -1.3697 -2.5428 48 1 3.7353 -2.4241 -2.5406 49 1 3.6934 1.2501 -0.3486 50 1 5.1449 0.7754 -1.2629 51 1 3.6723 1.2762 -2.1283 52 1 1.6966 -1.7576 -1.2350 53 1 1.6583 -0.2248 -2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328193802.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:51 Heat of formation + Delta-G solvation = -107.462926 kcal Electronic energy + Delta-G solvation = -31663.039353 eV Core-core repulsion = 27725.873204 eV Total energy + Delta-G solvation = -3937.166149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.26593 -40.65040 -39.22275 -38.45088 -35.65309 -35.33239 -34.64672 -33.56847 -31.68880 -28.81183 -28.24782 -27.70965 -27.44945 -26.97447 -26.27599 -23.79629 -23.48532 -21.82924 -21.23192 -19.93411 -19.46545 -19.05801 -18.23473 -18.00249 -17.58218 -16.59483 -16.29544 -16.09656 -15.98401 -15.70795 -15.45664 -15.31225 -15.10711 -14.79061 -14.57890 -14.43191 -14.36820 -13.98811 -13.93324 -13.65349 -13.27365 -13.09161 -12.99080 -12.90457 -12.86739 -12.76716 -12.60538 -12.50903 -12.33465 -12.31932 -12.25834 -11.89434 -11.86527 -11.83769 -11.71470 -11.32452 -11.21034 -11.12841 -10.99037 -10.59662 -10.51747 -9.83496 -9.64981 -8.12543 -6.29943 0.94584 1.11671 1.38713 1.42154 1.44637 1.53285 2.32512 2.42550 3.08217 3.17115 3.57176 3.72582 3.77994 3.83906 3.88529 4.05601 4.13260 4.23029 4.24447 4.37367 4.48505 4.51523 4.59175 4.59903 4.64839 4.69671 4.70301 4.74673 4.76073 4.84014 4.86931 4.94988 5.02410 5.05361 5.10073 5.10746 5.15282 5.18144 5.20109 5.25527 5.27532 5.33232 5.39572 5.40536 5.46598 5.52691 5.56800 5.84137 5.92218 5.94330 6.25998 6.30698 6.62269 6.78896 6.87199 7.40802 8.91423 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018133 B = 0.003199 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.749174 B = 8751.669973 C = 9334.918831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 H 0.054 0.946 4 C 0.104 3.896 5 N -0.581 5.581 6 C 0.525 3.475 7 O -0.550 6.550 8 C 0.499 3.501 9 O -0.564 6.564 10 N -0.585 5.585 11 C 0.105 3.895 12 C -0.128 4.128 13 C -0.102 4.102 14 C 0.035 3.965 15 H -0.019 1.019 16 C -0.532 4.532 17 H 0.067 0.933 18 C 0.008 3.992 19 N -0.918 5.918 20 Si 0.960 3.040 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.258 1.258 24 C 0.125 3.875 25 C 0.113 3.887 26 C -0.077 4.077 27 C -0.132 4.132 28 C -0.142 4.142 29 C -0.094 4.094 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.056 0.944 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.040 0.960 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.260 0.740 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.105 0.895 46 H 0.069 0.931 47 H 0.053 0.947 48 H 0.076 0.924 49 H 0.028 0.972 50 H 0.043 0.957 51 H 0.070 0.930 52 H 0.090 0.910 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.573 -13.515 -21.328 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 H 0.073 0.927 4 C -0.018 4.018 5 N -0.313 5.313 6 C 0.308 3.692 7 O -0.428 6.428 8 C 0.282 3.718 9 O -0.443 6.443 10 N -0.317 5.317 11 C -0.016 4.016 12 C -0.166 4.166 13 C -0.140 4.140 14 C 0.016 3.984 15 H -0.001 1.001 16 C -0.570 4.570 17 H 0.086 0.914 18 C -0.191 4.191 19 N -0.557 5.557 20 Si 0.786 3.214 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.182 1.182 24 C 0.004 3.996 25 C -0.008 4.008 26 C -0.077 4.077 27 C -0.189 4.189 28 C -0.199 4.199 29 C -0.131 4.131 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.128 0.872 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.123 0.877 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.095 0.905 49 H 0.047 0.953 50 H 0.062 0.938 51 H 0.089 0.911 52 H 0.108 0.892 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.145 -12.758 -21.366 25.412 hybrid contribution 0.170 1.505 1.387 2.054 sum -4.976 -11.253 -19.978 23.463 Atomic orbital electron populations 1.21725 0.92606 1.03256 1.02154 1.21527 0.97269 0.99327 0.94501 0.92729 1.22124 0.77503 1.02845 0.99294 1.48155 1.07757 1.58234 1.17201 1.20125 0.86984 0.77278 0.84834 1.90736 1.14660 1.55538 1.81871 1.20640 0.79191 0.86307 0.85666 1.90777 1.51118 1.19178 1.83269 1.48612 1.61423 1.10013 1.11682 1.22036 1.00575 0.79310 0.99713 1.21927 0.97540 1.02610 0.94486 1.21523 1.00573 0.95721 0.96187 1.18950 0.93244 0.93044 0.93178 1.00128 1.21488 1.42745 0.93022 0.99777 0.91448 1.25930 0.95879 0.96835 1.00437 1.70092 1.48749 1.01426 1.35425 0.85516 0.78333 0.77925 0.79654 1.20427 1.21390 1.18192 1.21924 0.96539 1.01247 0.79898 1.22002 0.98903 0.97948 0.81902 1.20870 0.96724 0.95045 0.95097 1.21748 1.01059 1.01040 0.95077 1.21892 1.00367 0.96515 1.01115 1.21652 0.92703 1.01949 0.96845 0.93771 0.91038 0.90471 0.87374 0.92556 0.87795 0.89996 0.87242 0.94128 0.92635 0.91266 0.93116 0.92476 0.90414 0.90577 0.87661 0.91177 0.92770 0.90546 0.95294 0.93826 0.91098 0.89191 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.20 71.98 0.66 -1.33 16 2 C -0.11 -1.93 2.53 -10.72 -0.03 -1.96 16 3 H 0.05 1.30 6.34 -2.38 -0.02 1.28 16 4 C 0.10 2.30 5.61 86.36 0.48 2.79 16 5 N -0.58 -15.22 2.42 -821.32 -1.99 -17.21 16 6 C 0.53 19.50 5.47 87.27 0.48 19.98 16 7 O -0.55 -23.36 16.51 -3.24 -0.05 -23.41 16 8 C 0.50 22.15 5.60 87.27 0.49 22.64 16 9 O -0.56 -30.16 16.34 -3.24 -0.05 -30.21 16 10 N -0.58 -24.33 2.97 -820.48 -2.44 -26.77 16 11 C 0.11 3.21 6.36 86.36 0.55 3.76 16 12 C -0.13 -4.03 6.08 30.69 0.19 -3.84 16 13 C -0.10 -3.93 5.11 30.65 0.16 -3.77 16 14 C 0.04 1.78 2.25 -11.46 -0.03 1.76 16 15 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 16 C -0.53 -29.01 8.56 25.60 0.22 -28.79 16 17 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 18 C 0.01 0.47 5.30 84.65 0.45 0.92 16 19 N -0.92 -56.22 11.40 21.44 0.24 -55.98 16 20 Si 0.96 44.06 29.54 68.60 2.03 46.08 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 23 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 24 C 0.13 6.20 5.39 86.36 0.47 6.67 16 25 C 0.11 2.20 5.08 86.22 0.44 2.64 16 26 C -0.08 -1.18 0.77 -52.25 -0.04 -1.22 16 27 C -0.13 -1.34 8.48 71.98 0.61 -0.73 16 28 C -0.14 -2.97 7.98 71.98 0.57 -2.40 16 29 C -0.09 -1.16 4.00 30.62 0.12 -1.04 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 1.65 6.23 -2.39 -0.01 1.64 16 35 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.08 2.28 6.31 -2.39 -0.02 2.26 16 37 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 2.09 8.14 -2.39 -0.02 2.08 16 40 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 42 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.08 4.64 5.16 -2.39 -0.01 4.63 16 44 H 0.08 1.82 7.00 -2.39 -0.02 1.80 16 45 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 49 H 0.03 0.78 5.98 -2.38 -0.01 0.77 16 50 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 53 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 Total: -1.00 -76.92 402.03 4.40 -72.52 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.87 Total: 18.91 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 5.79 Total: 16.07 kcal Atomic # 7 Polarization: -95.77 SS G_CDS: -4.18 Total: -99.95 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -0.11 Total: -53.63 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -76.92 4.40 -72.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328193802.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.945 kcal (2) G-P(sol) polarization free energy of solvation -76.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds