Wall clock time and date at job start Tue Mar 31 2020 20:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47787 * 2 1 4 4 C 1.53001 * 109.47042 * 239.99789 * 2 1 3 5 5 C 1.53006 * 109.47203 * 300.00411 * 4 2 1 6 6 C 1.52992 * 109.46796 * 299.99495 * 5 4 2 7 7 H 1.08999 * 109.47868 * 299.99998 * 6 5 4 8 8 N 1.46505 * 109.47105 * 179.97438 * 6 5 4 9 9 C 1.34786 * 119.99445 * 85.00188 * 8 6 5 10 10 O 1.21344 * 119.99835 * 0.02562 * 9 8 6 11 11 C 1.49443 * 119.99661 * 180.02562 * 9 8 6 12 12 O 1.21349 * 120.00323 * 6.67689 * 11 9 8 13 13 N 1.34778 * 120.00047 * 186.67765 * 11 9 8 14 14 C 1.46926 * 120.62689 * 7.17615 * 13 11 9 15 15 C 1.53190 * 108.77749 * 126.37325 * 14 13 11 16 16 C 1.53047 * 109.31316 * 54.63299 * 15 14 13 17 17 C 1.50698 * 109.46001 * 178.62159 * 16 15 14 18 18 H 1.08003 * 120.00516 * 25.28552 * 17 16 15 19 19 C 1.37874 * 119.99702 * 205.29528 * 17 16 15 20 20 N 1.31515 * 120.00171 * 175.18418 * 19 17 16 21 21 Si 1.86796 * 120.00389 * 355.17897 * 19 17 16 22 22 H 1.48506 * 109.47134 * 95.01870 * 21 19 17 23 23 H 1.48493 * 109.47769 * 215.02358 * 21 19 17 24 24 H 1.48512 * 109.46914 * 335.02446 * 21 19 17 25 25 C 1.53046 * 109.53501 * 298.63583 * 16 15 14 26 26 C 1.46927 * 120.63282 * 187.15674 * 13 11 9 27 27 C 1.53006 * 109.47136 * 60.00225 * 6 5 4 28 28 H 1.09008 * 109.46681 * 59.99732 * 27 6 5 29 29 C 1.52995 * 109.47049 * 179.97438 * 27 6 5 30 30 C 1.52993 * 109.47215 * 299.99755 * 27 6 5 31 31 H 1.08999 * 109.47330 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46916 * 300.00228 * 1 2 3 33 33 H 1.09001 * 109.47092 * 59.99781 * 1 2 3 34 34 H 1.09006 * 109.47603 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.46826 * 60.00267 * 4 2 1 36 36 H 1.09004 * 109.46961 * 180.02562 * 5 4 2 37 37 H 1.08999 * 109.46910 * 60.00079 * 5 4 2 38 38 H 0.96991 * 120.00266 * 265.00397 * 8 6 5 39 39 H 1.08998 * 109.59060 * 6.58350 * 14 13 11 40 40 H 1.09006 * 109.58560 * 246.15709 * 14 13 11 41 41 H 1.08999 * 109.49531 * 294.68080 * 15 14 13 42 42 H 1.09001 * 109.52822 * 174.60030 * 15 14 13 43 43 H 1.08994 * 109.45984 * 58.65698 * 16 15 14 44 44 H 0.96999 * 120.00507 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.49539 * 181.31502 * 25 16 15 46 46 H 1.09001 * 109.50091 * 301.41417 * 25 16 15 47 47 H 1.09000 * 109.58523 * 353.41317 * 26 13 11 48 48 H 1.08999 * 109.58830 * 113.84481 * 26 13 11 49 49 H 1.08999 * 109.47466 * 60.00072 * 29 27 6 50 50 H 1.09004 * 109.47220 * 179.97438 * 29 27 6 51 51 H 1.09004 * 109.47672 * 299.99603 * 29 27 6 52 52 H 1.09006 * 109.46867 * 300.00252 * 30 27 6 53 53 H 1.08999 * 109.47401 * 179.97438 * 30 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5298 -2.1638 -1.2492 6 6 2.0399 -2.8850 -0.0001 7 1 3.1299 -2.8851 0.0000 8 7 1.5510 -4.2661 0.0003 9 6 2.2274 -5.2205 -0.6693 10 8 3.2414 -4.9359 -1.2719 11 6 1.7284 -6.6292 -0.6694 12 8 0.6538 -6.8923 -0.1709 13 7 2.4719 -7.6074 -1.2232 14 6 3.8387 -7.3361 -1.6891 15 6 4.7905 -8.3458 -1.0402 16 6 4.2975 -9.7653 -1.3308 17 6 5.2501 -10.7620 -0.7225 18 1 5.8575 -10.4808 0.1251 19 6 5.3465 -12.0329 -1.2482 20 7 6.2440 -12.8722 -0.7794 21 14 4.2022 -12.5630 -2.6263 22 1 4.8732 -12.3546 -3.9346 23 1 3.8664 -14.0005 -2.4656 24 1 2.9572 -11.7550 -2.5742 25 6 2.9046 -9.9570 -0.7265 26 6 1.9314 -8.9655 -1.3720 27 6 1.5299 -2.1638 1.2492 28 1 0.4398 -2.1638 1.2492 29 6 2.0394 -2.8854 2.4984 30 6 2.0399 -0.7213 1.2493 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 3.1300 -0.7218 -1.2491 35 1 1.6766 -0.2074 -2.1392 36 1 1.8935 -2.6778 -2.1390 37 1 0.4398 -2.1637 -1.2493 38 1 0.7406 -4.4936 0.4823 39 1 4.1283 -6.3249 -1.4032 40 1 3.8820 -7.4379 -2.7736 41 1 4.8146 -8.1825 0.0372 42 1 5.7924 -8.2176 -1.4500 43 1 4.2501 -9.9196 -2.4087 44 1 6.3115 -13.7665 -1.1490 45 1 2.5639 -10.9753 -0.9136 46 1 2.9464 -9.7785 0.3480 47 1 0.9625 -9.0294 -0.8767 48 1 1.8192 -9.2002 -2.4305 49 1 3.1294 -2.8858 2.4986 50 1 1.6765 -2.3713 3.3885 51 1 1.6757 -3.9129 2.4983 52 1 3.1300 -0.7214 1.2492 53 1 1.6763 -0.2073 2.1390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328830380.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:57 Heat of formation + Delta-G solvation = -103.840559 kcal Electronic energy + Delta-G solvation = -30593.268799 eV Core-core repulsion = 26656.259727 eV Total energy + Delta-G solvation = -3937.009072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.14603 -40.74996 -39.38169 -38.67069 -36.01876 -35.16077 -33.60325 -33.35934 -32.03956 -31.58874 -28.70977 -27.61165 -27.39906 -25.81265 -24.39726 -23.86768 -22.83414 -22.07719 -21.59979 -20.61873 -19.61905 -19.00463 -18.52602 -18.13059 -17.26854 -16.94183 -16.44007 -16.29408 -15.92543 -15.76055 -15.43977 -15.37348 -14.97772 -14.85393 -14.69782 -14.60685 -14.35275 -14.02235 -13.94900 -13.75424 -13.62484 -13.35900 -13.10504 -12.90213 -12.89310 -12.70043 -12.53839 -12.31575 -12.28673 -12.12840 -11.98450 -11.77086 -11.67920 -11.48944 -11.31849 -11.31697 -11.16494 -11.05333 -11.02285 -10.64999 -10.30884 -10.01918 -9.72175 -8.27392 -6.31308 0.30839 1.27157 1.37291 1.39610 1.50943 2.08451 2.37738 2.45054 3.08216 3.24688 3.59521 3.72105 3.87662 4.01939 4.11679 4.18573 4.19915 4.23997 4.25166 4.34459 4.39468 4.48516 4.48702 4.53858 4.59920 4.67603 4.74683 4.76795 4.81861 4.88488 4.95510 4.96867 4.98989 5.03776 5.10324 5.12319 5.15355 5.17147 5.24361 5.28447 5.30066 5.36141 5.40589 5.46186 5.49934 5.57264 5.64311 5.69432 5.72372 6.00608 6.25386 6.33885 6.67294 6.75736 6.91406 7.34480 8.89718 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026721 B = 0.002408 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.613490 B =11623.957118 C =11716.984553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 H 0.080 0.920 4 C -0.109 4.109 5 C -0.128 4.128 6 C 0.148 3.852 7 H 0.078 0.922 8 N -0.680 5.680 9 C 0.514 3.486 10 O -0.524 6.524 11 C 0.500 3.500 12 O -0.551 6.551 13 N -0.572 5.572 14 C 0.074 3.926 15 C -0.110 4.110 16 C 0.013 3.987 17 C -0.514 4.514 18 H 0.025 0.975 19 C 0.007 3.993 20 N -0.954 5.954 21 Si 0.938 3.062 22 H -0.274 1.274 23 H -0.292 1.292 24 H -0.222 1.222 25 C -0.123 4.123 26 C 0.109 3.891 27 C -0.092 4.092 28 H 0.091 0.909 29 C -0.151 4.151 30 C -0.103 4.103 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.417 0.583 39 H 0.141 0.859 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.068 0.932 43 H 0.036 0.964 44 H 0.264 0.736 45 H 0.065 0.935 46 H 0.044 0.956 47 H 0.091 0.909 48 H 0.083 0.917 49 H 0.049 0.951 50 H 0.072 0.928 51 H 0.047 0.953 52 H 0.063 0.937 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.317 28.678 0.585 32.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 H 0.099 0.901 4 C -0.147 4.147 5 C -0.166 4.166 6 C 0.044 3.956 7 H 0.096 0.904 8 N -0.332 5.332 9 C 0.296 3.704 10 O -0.402 6.402 11 C 0.283 3.717 12 O -0.430 6.430 13 N -0.304 5.304 14 C -0.046 4.046 15 C -0.148 4.148 16 C -0.006 4.006 17 C -0.552 4.552 18 H 0.044 0.956 19 C -0.189 4.189 20 N -0.594 5.594 21 Si 0.761 3.239 22 H -0.199 1.199 23 H -0.218 1.218 24 H -0.145 1.145 25 C -0.162 4.162 26 C -0.013 4.013 27 C -0.111 4.111 28 H 0.109 0.891 29 C -0.208 4.208 30 C -0.141 4.141 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.254 0.746 39 H 0.158 0.842 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.063 0.937 47 H 0.109 0.891 48 H 0.101 0.899 49 H 0.068 0.932 50 H 0.091 0.909 51 H 0.066 0.934 52 H 0.082 0.918 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.093 28.577 0.414 31.866 hybrid contribution -0.029 -1.464 -0.133 1.470 sum -14.122 27.113 0.281 30.572 Atomic orbital electron populations 1.21945 0.94865 1.02048 1.01981 1.21132 0.96284 0.99486 0.94046 0.90135 1.21517 1.00660 0.93860 0.98659 1.21924 1.01705 0.96355 0.96644 1.21310 0.99512 0.78293 0.96437 0.90419 1.45886 1.28709 1.08293 1.50306 1.19962 0.83979 0.86295 0.80211 1.90471 1.24407 1.81530 1.43805 1.20316 0.85034 0.86965 0.79376 1.90700 1.23064 1.83655 1.45590 1.48143 1.15644 1.09523 1.57101 1.22998 0.78837 1.03289 0.99518 1.21790 0.98726 0.94747 0.99548 1.19106 0.92257 0.93280 0.95917 1.21278 1.21846 0.96960 1.15141 0.95634 1.26003 0.96624 0.96607 0.99711 1.70083 1.36402 1.07539 1.45370 0.85936 0.81443 0.77591 0.78898 1.19946 1.21809 1.14457 1.22182 0.96312 0.98134 0.99550 1.21878 0.97829 0.79907 1.01706 1.21419 1.01720 0.95483 0.92467 0.89127 1.21865 1.01131 1.00147 0.97689 1.21586 1.00816 0.93153 0.98544 0.92401 0.92096 0.92680 0.92076 0.91019 0.93246 0.90545 0.74585 0.84189 0.90547 0.94025 0.91311 0.94622 0.92711 0.91692 0.93710 0.89093 0.89910 0.93206 0.90942 0.93387 0.91824 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.50 71.98 0.61 -0.62 16 2 C -0.09 -0.80 3.20 -10.79 -0.03 -0.84 16 3 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 4 C -0.11 -1.26 5.45 30.60 0.17 -1.09 16 5 C -0.13 -1.90 5.22 30.59 0.16 -1.74 16 6 C 0.15 2.39 1.90 44.99 0.09 2.47 16 7 H 0.08 1.54 7.58 -2.39 -0.02 1.53 16 8 N -0.68 -13.49 4.37 -443.86 -1.94 -15.43 16 9 C 0.51 13.72 7.72 87.26 0.67 14.39 16 10 O -0.52 -15.48 12.80 -3.23 -0.04 -15.52 16 11 C 0.50 15.55 7.74 87.27 0.68 16.23 16 12 O -0.55 -18.42 15.92 -3.24 -0.05 -18.47 16 13 N -0.57 -18.85 2.97 -820.48 -2.44 -21.29 16 14 C 0.07 2.43 6.02 86.36 0.52 2.95 16 15 C -0.11 -4.32 5.34 30.67 0.16 -4.16 16 16 C 0.01 0.60 1.62 -11.51 -0.02 0.58 16 17 C -0.51 -29.07 8.88 25.60 0.23 -28.84 16 18 H 0.03 1.62 8.05 -2.91 -0.02 1.60 16 19 C 0.01 0.40 5.47 84.65 0.46 0.86 16 20 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 21 Si 0.94 42.89 26.17 68.60 1.80 44.68 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.22 -8.88 5.43 99.48 0.54 -8.34 16 25 C -0.12 -4.99 4.89 30.67 0.15 -4.84 16 26 C 0.11 3.64 6.44 86.36 0.56 4.20 16 27 C -0.09 -1.05 2.02 -10.80 -0.02 -1.07 16 28 H 0.09 0.89 6.43 -2.38 -0.02 0.87 16 29 C -0.15 -1.96 9.04 71.98 0.65 -1.31 16 30 C -0.10 -0.95 4.73 30.59 0.14 -0.81 16 31 H 0.06 0.51 4.81 -2.39 -0.01 0.50 16 32 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 1.02 6.43 -2.39 -0.02 1.01 16 38 H 0.42 7.38 7.87 -92.71 -0.73 6.65 16 39 H 0.14 4.47 4.22 -55.43 -0.23 4.24 16 40 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 42 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 43 H 0.04 1.56 6.24 -2.39 -0.01 1.54 16 44 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 45 H 0.06 2.66 5.79 -2.39 -0.01 2.65 16 46 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.09 2.95 7.00 -2.39 -0.02 2.93 16 48 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 49 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 51 H 0.05 0.73 7.44 -2.39 -0.02 0.71 16 52 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 53 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -67.84 392.31 2.58 -65.26 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: -0.22 Total: 23.99 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 5.17 Total: -3.63 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -4.08 Total: -96.32 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.09 Total: -33.99 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.80 Total: 44.68 kcal Total: -67.84 2.58 -65.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328830380.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.580 kcal (2) G-P(sol) polarization free energy of solvation -67.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds