Wall clock time and date at job start Tue Mar 31 2020 20:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08997 * 109.47465 * 2 1 4 4 C 1.52995 * 109.47272 * 239.99403 * 2 1 3 5 5 C 1.53004 * 109.47381 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46854 * 60.00320 * 5 4 2 7 7 H 1.08996 * 109.47044 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.47214 * 59.99949 * 6 5 4 9 9 C 1.34775 * 119.99684 * 84.99992 * 8 6 5 10 10 O 1.21347 * 120.00247 * 0.02562 * 9 8 6 11 11 C 1.49452 * 119.99837 * 179.97438 * 9 8 6 12 12 O 1.21348 * 120.00085 * 6.74991 * 11 9 8 13 13 N 1.34775 * 119.99879 * 186.74759 * 11 9 8 14 14 C 1.46925 * 120.63257 * 8.42095 * 13 11 9 15 15 C 1.53625 * 108.53944 * 126.37027 * 14 13 11 16 16 C 1.53045 * 109.24308 * 54.86158 * 15 14 13 17 17 C 1.50693 * 109.45974 * 178.48957 * 16 15 14 18 18 H 1.08008 * 120.00025 * 120.07298 * 17 16 15 19 19 C 1.37871 * 120.00386 * 300.06520 * 17 16 15 20 20 N 1.31521 * 119.99606 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00515 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46737 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47240 * 119.99761 * 21 19 17 24 24 H 1.48495 * 109.47219 * 239.99849 * 21 19 17 25 25 C 1.53045 * 109.53415 * 298.50918 * 16 15 14 26 26 C 1.46928 * 120.62676 * 188.70745 * 13 11 9 27 27 C 1.53000 * 109.47187 * 300.00064 * 6 5 4 28 28 H 1.09005 * 109.47197 * 300.00362 * 27 6 5 29 29 C 1.53001 * 109.47554 * 179.97438 * 27 6 5 30 30 C 1.53002 * 109.46901 * 119.99761 * 2 1 3 31 31 H 1.08997 * 109.47465 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47544 * 300.00450 * 1 2 3 33 33 H 1.09003 * 109.47210 * 60.00313 * 1 2 3 34 34 H 1.09000 * 109.47246 * 60.00591 * 4 2 1 35 35 H 1.09001 * 109.47755 * 300.00404 * 4 2 1 36 36 H 1.08997 * 109.47403 * 300.00626 * 5 4 2 37 37 H 1.08996 * 109.47500 * 180.02562 * 5 4 2 38 38 H 0.96991 * 120.00123 * 264.99932 * 8 6 5 39 39 H 1.08995 * 109.59241 * 246.20303 * 14 13 11 40 40 H 1.09001 * 109.58548 * 6.63766 * 14 13 11 41 41 H 1.09004 * 109.63667 * 294.86788 * 15 14 13 42 42 H 1.09003 * 109.43356 * 174.72527 * 15 14 13 43 43 H 1.09004 * 109.46158 * 58.52645 * 16 15 14 44 44 H 0.97002 * 119.99803 * 180.02562 * 20 19 17 45 45 H 1.08994 * 109.49627 * 301.41126 * 25 16 15 46 46 H 1.08996 * 109.52146 * 181.33184 * 25 16 15 47 47 H 1.09000 * 109.59094 * 353.37134 * 26 13 11 48 48 H 1.09007 * 109.58297 * 113.65656 * 26 13 11 49 49 H 1.09002 * 109.46841 * 59.99803 * 29 27 6 50 50 H 1.08997 * 109.47545 * 179.97438 * 29 27 6 51 51 H 1.09001 * 109.46710 * 300.00523 * 29 27 6 52 52 H 1.08997 * 109.47177 * 299.99638 * 30 2 1 53 53 H 1.09000 * 109.47336 * 59.99741 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2491 5 6 3.5700 -0.7219 -1.2488 6 6 4.0794 -1.4435 0.0005 7 1 5.1694 -1.4435 0.0010 8 7 3.5905 -2.8246 0.0003 9 6 4.2671 -3.7787 -0.6692 10 8 5.2815 -3.4941 -1.2713 11 6 3.7687 -5.1877 -0.6689 12 8 2.6937 -5.4510 -0.1714 13 7 4.5133 -6.1659 -1.2214 14 6 5.8899 -5.9012 -1.6613 15 6 6.8198 -6.9319 -1.0033 16 6 6.3179 -8.3415 -1.3245 17 6 7.2477 -9.3571 -0.7123 18 1 6.8730 -10.0642 0.0131 19 6 8.5767 -9.3840 -1.0782 20 7 9.0328 -8.5235 -1.9621 21 14 9.7292 -10.6434 -0.3198 22 1 8.9747 -11.4911 0.6380 23 1 10.3027 -11.4976 -1.3906 24 1 10.8260 -9.9432 0.3955 25 6 4.9112 -8.5270 -0.7509 26 6 3.9615 -7.5158 -1.4008 27 6 3.5694 -0.7222 1.2497 28 1 3.9331 0.3054 1.2499 29 6 4.0782 -1.4441 2.4990 30 6 2.0399 -0.7212 1.2493 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6767 -0.2076 -2.1392 35 1 1.6766 -1.7490 -1.2492 36 1 3.9337 0.3056 -1.2486 37 1 3.9333 -1.2354 -2.1389 38 1 2.7800 -3.0522 0.4818 39 1 5.9505 -5.9903 -2.7459 40 1 6.1834 -4.8962 -1.3581 41 1 6.8240 -6.7845 0.0767 42 1 7.8307 -6.8084 -1.3918 43 1 6.2904 -8.4797 -2.4054 44 1 9.9678 -8.5426 -2.2198 45 1 4.9334 -8.3646 0.3267 46 1 4.5633 -9.5387 -0.9592 47 1 2.9823 -7.5765 -0.9259 48 1 3.8657 -7.7329 -2.4648 49 1 5.1682 -1.4449 2.4995 50 1 3.7153 -0.9300 3.3890 51 1 3.7142 -2.4715 2.4985 52 1 1.6766 -0.2073 2.1392 53 1 1.6765 -1.7489 1.2494 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328830381.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:01 Heat of formation + Delta-G solvation = -104.620967 kcal Electronic energy + Delta-G solvation = -30841.083349 eV Core-core repulsion = 26904.040437 eV Total energy + Delta-G solvation = -3937.042913 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.16384 -40.72149 -39.20198 -38.56377 -35.75421 -35.16294 -33.66251 -33.02490 -32.11527 -31.73382 -28.46811 -27.52442 -27.31351 -25.86801 -24.21671 -23.86478 -22.90691 -21.83563 -21.51960 -20.51559 -20.12623 -18.80582 -18.37911 -17.95089 -17.19317 -16.75202 -16.48549 -16.40082 -16.01409 -15.57555 -15.35923 -15.09066 -14.86133 -14.70836 -14.64276 -14.63656 -14.35710 -14.17282 -13.92864 -13.38740 -13.34974 -13.23669 -13.17576 -12.85227 -12.81478 -12.70523 -12.49487 -12.34563 -12.27859 -12.16260 -12.15190 -11.96571 -11.79009 -11.52630 -11.35863 -11.15424 -11.02732 -11.01178 -10.92712 -10.46792 -10.30583 -9.98378 -9.68726 -8.08091 -6.22051 0.32761 1.32518 1.39765 1.42335 1.52888 2.10115 2.43377 2.49835 3.18311 3.28766 3.61784 3.73482 3.76922 4.07348 4.09602 4.17300 4.26416 4.30145 4.39631 4.40092 4.49148 4.51266 4.53882 4.60012 4.62141 4.74824 4.76668 4.83773 4.86532 4.92306 4.94544 5.00249 5.07351 5.09945 5.13760 5.15177 5.18119 5.22707 5.26322 5.35879 5.37597 5.41170 5.42398 5.45813 5.52853 5.61573 5.62697 5.95609 6.03856 6.09854 6.28548 6.37623 6.69088 6.88235 6.94341 7.45814 8.95724 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021794 B = 0.002568 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.421439 B =10902.496832 C =11240.664811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 H 0.084 0.916 4 C -0.113 4.113 5 C -0.127 4.127 6 C 0.143 3.857 7 H 0.080 0.920 8 N -0.675 5.675 9 C 0.510 3.490 10 O -0.527 6.527 11 C 0.498 3.502 12 O -0.552 6.552 13 N -0.571 5.571 14 C 0.082 3.918 15 C -0.112 4.112 16 C 0.043 3.957 17 C -0.532 4.532 18 H 0.051 0.949 19 C 0.014 3.986 20 N -0.914 5.914 21 Si 0.952 3.048 22 H -0.269 1.269 23 H -0.280 1.280 24 H -0.282 1.282 25 C -0.112 4.112 26 C 0.112 3.888 27 C -0.089 4.089 28 H 0.107 0.893 29 C -0.151 4.151 30 C -0.111 4.111 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.094 0.906 37 H 0.047 0.953 38 H 0.414 0.586 39 H 0.058 0.942 40 H 0.130 0.870 41 H 0.024 0.976 42 H 0.076 0.924 43 H 0.003 0.997 44 H 0.261 0.739 45 H 0.044 0.956 46 H 0.072 0.928 47 H 0.093 0.907 48 H 0.078 0.922 49 H 0.051 0.949 50 H 0.074 0.926 51 H 0.043 0.957 52 H 0.083 0.917 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.147 20.608 5.091 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.102 0.898 4 C -0.151 4.151 5 C -0.166 4.166 6 C 0.040 3.960 7 H 0.098 0.902 8 N -0.328 5.328 9 C 0.291 3.709 10 O -0.406 6.406 11 C 0.281 3.719 12 O -0.432 6.432 13 N -0.302 5.302 14 C -0.039 4.039 15 C -0.151 4.151 16 C 0.024 3.976 17 C -0.570 4.570 18 H 0.069 0.931 19 C -0.185 4.185 20 N -0.553 5.553 21 Si 0.778 3.222 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.207 1.207 25 C -0.150 4.150 26 C -0.010 4.010 27 C -0.107 4.107 28 H 0.125 0.875 29 C -0.208 4.208 30 C -0.149 4.149 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.066 0.934 38 H 0.253 0.747 39 H 0.077 0.923 40 H 0.147 0.853 41 H 0.043 0.957 42 H 0.095 0.905 43 H 0.021 0.979 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.090 0.910 47 H 0.112 0.888 48 H 0.096 0.904 49 H 0.070 0.930 50 H 0.093 0.907 51 H 0.062 0.938 52 H 0.101 0.899 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.835 20.716 4.839 25.935 hybrid contribution 0.740 -1.338 0.209 1.543 sum -14.095 19.378 5.048 24.487 Atomic orbital electron populations 1.21820 0.94885 1.01610 1.02159 1.21121 0.95697 0.99923 0.93778 0.89807 1.21569 0.94484 1.00336 0.98672 1.21898 0.96656 1.01385 0.96629 1.21319 0.99218 0.78807 0.96642 0.90207 1.45897 1.28488 1.08239 1.50173 1.20026 0.83996 0.86476 0.80360 1.90519 1.24480 1.81687 1.43877 1.20326 0.85014 0.86986 0.79526 1.90675 1.23039 1.83696 1.45769 1.48197 1.14721 1.10171 1.57113 1.22921 0.78929 1.03088 0.98920 1.21872 1.00163 0.95630 0.97387 1.18654 0.91311 0.92850 0.94777 1.21569 0.94678 1.16383 1.24405 0.93122 1.25707 0.99725 0.97574 0.95512 1.69988 1.15300 1.37063 1.32996 0.85603 0.78897 0.79321 0.78401 1.19385 1.20609 1.20749 1.21842 0.96027 0.98059 0.99093 1.21845 0.97756 0.80065 1.01338 1.21398 0.96439 1.00558 0.92328 0.87519 1.21856 1.01008 1.00211 0.97748 1.21690 0.93804 1.00650 0.98709 0.93471 0.91801 0.92480 0.91411 0.93461 0.88803 0.93413 0.74740 0.92329 0.85315 0.95708 0.90542 0.97860 0.92978 0.93703 0.90989 0.88825 0.90382 0.93026 0.90737 0.93789 0.89889 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.19 71.98 0.66 -0.90 16 2 C -0.09 -0.95 2.72 -10.80 -0.03 -0.98 16 3 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.11 -1.66 5.05 30.59 0.15 -1.51 16 5 C -0.13 -2.11 5.60 30.60 0.17 -1.94 16 6 C 0.14 2.61 2.23 44.99 0.10 2.71 16 7 H 0.08 1.72 7.58 -2.39 -0.02 1.70 16 8 N -0.67 -15.44 3.53 -443.86 -1.57 -17.01 16 9 C 0.51 15.68 7.71 87.27 0.67 16.35 16 10 O -0.53 -18.27 12.84 -3.24 -0.04 -18.31 16 11 C 0.50 17.40 7.73 87.27 0.67 18.08 16 12 O -0.55 -19.92 15.93 -3.24 -0.05 -19.97 16 13 N -0.57 -21.42 2.97 -819.64 -2.43 -23.86 16 14 C 0.08 3.36 6.01 86.51 0.52 3.88 16 15 C -0.11 -5.38 5.17 30.82 0.16 -5.22 16 16 C 0.04 2.12 2.06 -11.51 -0.02 2.10 16 17 C -0.53 -29.30 8.56 25.60 0.22 -29.09 16 18 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 19 C 0.01 0.75 5.30 84.65 0.45 1.20 16 20 N -0.91 -52.36 11.31 21.45 0.24 -52.12 16 21 Si 0.95 43.74 29.54 68.60 2.03 45.76 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 25 C -0.11 -4.64 5.30 30.67 0.16 -4.48 16 26 C 0.11 4.02 6.44 86.36 0.56 4.57 16 27 C -0.09 -1.11 2.51 -10.81 -0.03 -1.13 16 28 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 29 C -0.15 -2.15 9.03 71.98 0.65 -1.50 16 30 C -0.11 -1.24 4.31 30.58 0.13 -1.11 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 0.86 7.60 -2.39 -0.02 0.84 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.41 8.83 6.14 -92.72 -0.57 8.26 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.13 5.18 4.30 -48.68 -0.21 4.97 16 41 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.08 4.13 6.03 -2.39 -0.01 4.12 16 43 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 45 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 47 H 0.09 3.15 7.01 -2.39 -0.02 3.13 16 48 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 49 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 51 H 0.04 0.75 7.44 -2.39 -0.02 0.73 16 52 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 53 H 0.05 0.72 6.50 -2.39 -0.02 0.71 16 Total: -1.00 -62.84 399.44 3.50 -59.34 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.12 Total: 25.13 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 5.20 Total: 1.04 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -3.75 Total: -92.99 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -0.09 Total: -38.28 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -62.84 3.50 -59.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328830381.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.284 kcal (2) G-P(sol) polarization free energy of solvation -62.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds