Wall clock time and date at job start Tue Mar 31 2020 20:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46965 * 2 1 4 4 C 1.52998 * 109.47155 * 240.00542 * 2 1 3 5 5 C 1.53005 * 109.47155 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.46995 * 59.99172 * 5 4 2 7 7 H 1.09003 * 109.46919 * 60.01101 * 6 5 4 8 8 N 1.46501 * 109.46707 * 179.97438 * 6 5 4 9 9 C 1.34772 * 120.00699 * 275.00339 * 8 6 5 10 10 O 1.21354 * 119.99857 * 0.02562 * 9 8 6 11 11 C 1.49447 * 120.00492 * 180.02562 * 9 8 6 12 12 O 1.21345 * 119.99640 * 353.24440 * 11 9 8 13 13 N 1.34775 * 120.00199 * 173.24692 * 11 9 8 14 14 C 1.46921 * 120.63180 * 351.37021 * 13 11 9 15 15 C 1.53198 * 108.77823 * 233.63429 * 14 13 11 16 16 C 1.53039 * 109.30936 * 305.36376 * 15 14 13 17 17 C 1.50700 * 109.45877 * 181.38536 * 16 15 14 18 18 H 1.08003 * 119.99947 * 359.97235 * 17 16 15 19 19 C 1.37872 * 120.00126 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00438 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99944 * 359.97438 * 19 17 16 22 22 H 1.48508 * 109.47026 * 90.00127 * 21 19 17 23 23 H 1.48494 * 109.47141 * 330.00369 * 21 19 17 24 24 H 1.48498 * 109.47123 * 209.99882 * 21 19 17 25 25 C 1.53039 * 109.52636 * 61.37123 * 16 15 14 26 26 C 1.46927 * 120.63023 * 171.39754 * 13 11 9 27 27 C 1.52989 * 109.47637 * 300.00344 * 6 5 4 28 28 H 1.09004 * 109.47372 * 299.99839 * 27 6 5 29 29 C 1.53006 * 109.47207 * 179.97438 * 27 6 5 30 30 C 1.52995 * 109.47190 * 59.99909 * 27 6 5 31 31 H 1.08997 * 109.47013 * 299.99512 * 1 2 3 32 32 H 1.08997 * 109.47050 * 60.00035 * 1 2 3 33 33 H 1.09005 * 109.46965 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46742 * 299.99594 * 4 2 1 35 35 H 1.08997 * 109.47613 * 59.99768 * 4 2 1 36 36 H 1.09004 * 109.46911 * 300.00009 * 5 4 2 37 37 H 1.08997 * 109.47013 * 179.97438 * 5 4 2 38 38 H 0.97001 * 119.99736 * 95.00864 * 8 6 5 39 39 H 1.08999 * 109.59023 * 113.84194 * 14 13 11 40 40 H 1.09006 * 109.70612 * 353.48703 * 14 13 11 41 41 H 1.09000 * 109.49714 * 185.41374 * 15 14 13 42 42 H 1.08997 * 109.52267 * 65.33101 * 15 14 13 43 43 H 1.09001 * 109.45991 * 301.35513 * 16 15 14 44 44 H 0.97000 * 120.00610 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.49548 * 58.58135 * 25 16 15 46 46 H 1.08998 * 109.49484 * 178.67472 * 25 16 15 47 47 H 1.09005 * 109.58258 * 246.15162 * 26 13 11 48 48 H 1.09000 * 109.58723 * 6.43289 * 26 13 11 49 49 H 1.09003 * 109.46662 * 60.00343 * 29 27 6 50 50 H 1.09005 * 109.46840 * 179.97438 * 29 27 6 51 51 H 1.08994 * 109.46916 * 300.00154 * 29 27 6 52 52 H 1.09005 * 109.47074 * 60.00265 * 30 27 6 53 53 H 1.09001 * 109.47454 * 180.02562 * 30 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5701 -0.7206 -1.2496 6 6 4.0806 -1.4414 -0.0003 7 1 3.7177 -2.4692 -0.0002 8 7 5.5456 -1.4413 -0.0010 9 6 6.2193 -2.3975 -0.6705 10 8 5.6124 -3.2584 -1.2732 11 6 7.7138 -2.3978 -0.6707 12 8 8.3207 -1.4721 -0.1735 13 7 8.3875 -3.4261 -1.2231 14 6 7.6791 -4.6374 -1.6584 15 6 8.3383 -5.8560 -1.0046 16 6 9.8349 -5.8541 -1.3241 17 6 10.4808 -7.0698 -0.7110 18 1 9.8838 -7.7730 -0.1493 19 6 11.8338 -7.2843 -0.8670 20 7 12.3975 -8.3449 -0.3315 21 14 12.8662 -6.0682 -1.8390 22 1 13.3898 -5.0216 -0.9248 23 1 12.0279 -5.4347 -2.8882 24 1 14.0019 -6.7817 -2.4766 25 6 10.4790 -4.5902 -0.7497 26 6 9.8443 -3.3573 -1.4008 27 6 3.5706 -0.7202 1.2488 28 1 3.9335 0.3076 1.2487 29 6 4.0806 -1.4415 2.4981 30 6 2.0406 -0.7208 1.2492 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6767 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.9330 0.3073 -1.2497 37 1 3.9334 -1.2347 -2.1394 38 1 6.0308 -0.7531 0.4805 39 1 7.7404 -4.7268 -2.7430 40 1 6.6336 -4.5809 -1.3550 41 1 7.8844 -6.7675 -1.3935 42 1 8.1967 -5.8111 0.0752 43 1 9.9756 -5.8743 -2.4048 44 1 13.3493 -8.4960 -0.4415 45 1 10.3171 -4.5569 0.3277 46 1 11.5490 -4.6007 -0.9571 47 1 10.0823 -3.3423 -2.4645 48 1 10.2279 -2.4533 -0.9278 49 1 5.1707 -1.4414 2.4981 50 1 3.7176 -0.9274 3.3881 51 1 3.7174 -2.4692 2.4980 52 1 1.6777 -1.7487 1.2494 53 1 1.6772 -0.2067 2.1390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328830382.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:05 Heat of formation + Delta-G solvation = -103.551840 kcal Electronic energy + Delta-G solvation = -30450.938064 eV Core-core repulsion = 26513.941512 eV Total energy + Delta-G solvation = -3936.996552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.13740 -40.63183 -39.29448 -38.72300 -36.09150 -35.24204 -33.64990 -33.37212 -32.14605 -32.02329 -28.74459 -27.49934 -27.31879 -25.48564 -24.56136 -23.65686 -22.86407 -21.68627 -21.56820 -20.96485 -20.32457 -18.92336 -18.64621 -18.14892 -17.25950 -17.04713 -16.52714 -16.34784 -15.85408 -15.58283 -15.42090 -15.23366 -15.04190 -14.92922 -14.89269 -14.58142 -14.37345 -14.08397 -13.88020 -13.79227 -13.49529 -13.39850 -13.24006 -13.07523 -12.92224 -12.70362 -12.56503 -12.29115 -12.21436 -12.11942 -12.00018 -11.74063 -11.70023 -11.51651 -11.46778 -11.30402 -11.23169 -11.11897 -11.03880 -10.70586 -10.32946 -10.04016 -9.75252 -8.29789 -6.34009 0.29614 1.24421 1.30547 1.36289 1.46910 2.06970 2.32233 2.43268 3.04966 3.23973 3.58416 3.70236 3.87093 3.96544 4.06848 4.09782 4.15160 4.17724 4.24325 4.35738 4.40630 4.42536 4.43621 4.51190 4.59110 4.67914 4.74127 4.78171 4.82002 4.85444 4.92818 4.93566 4.97189 5.00582 5.02630 5.06540 5.10764 5.19104 5.20878 5.26442 5.27015 5.34619 5.38993 5.44911 5.46196 5.53299 5.62515 5.65773 5.69754 5.99073 6.23916 6.30489 6.65354 6.72902 6.90245 7.31290 8.86979 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026968 B = 0.002370 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.037210 B =11810.074768 C =11895.979663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.076 0.924 4 C -0.108 4.108 5 C -0.126 4.126 6 C 0.147 3.853 7 H 0.078 0.922 8 N -0.680 5.680 9 C 0.515 3.485 10 O -0.524 6.524 11 C 0.501 3.499 12 O -0.550 6.550 13 N -0.573 5.573 14 C 0.079 3.921 15 C -0.108 4.108 16 C 0.011 3.989 17 C -0.518 4.518 18 H 0.031 0.969 19 C 0.007 3.993 20 N -0.951 5.951 21 Si 0.947 3.053 22 H -0.266 1.266 23 H -0.238 1.238 24 H -0.300 1.300 25 C -0.129 4.129 26 C 0.109 3.891 27 C -0.090 4.090 28 H 0.089 0.911 29 C -0.151 4.151 30 C -0.102 4.102 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.417 0.583 39 H 0.078 0.922 40 H 0.139 0.861 41 H 0.071 0.929 42 H 0.043 0.957 43 H 0.033 0.967 44 H 0.265 0.735 45 H 0.050 0.950 46 H 0.052 0.948 47 H 0.085 0.915 48 H 0.092 0.908 49 H 0.047 0.953 50 H 0.072 0.928 51 H 0.049 0.951 52 H 0.062 0.938 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.615 22.004 0.062 32.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.095 0.905 4 C -0.146 4.146 5 C -0.165 4.165 6 C 0.044 3.956 7 H 0.096 0.904 8 N -0.332 5.332 9 C 0.296 3.704 10 O -0.402 6.402 11 C 0.284 3.716 12 O -0.429 6.429 13 N -0.305 5.305 14 C -0.042 4.042 15 C -0.146 4.146 16 C -0.008 4.008 17 C -0.556 4.556 18 H 0.050 0.950 19 C -0.189 4.189 20 N -0.592 5.592 21 Si 0.774 3.226 22 H -0.193 1.193 23 H -0.161 1.161 24 H -0.228 1.228 25 C -0.167 4.167 26 C -0.013 4.013 27 C -0.109 4.109 28 H 0.107 0.893 29 C -0.208 4.208 30 C -0.140 4.140 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.254 0.746 39 H 0.096 0.904 40 H 0.156 0.844 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.103 0.897 48 H 0.111 0.889 49 H 0.066 0.934 50 H 0.091 0.909 51 H 0.068 0.932 52 H 0.081 0.919 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.593 21.781 -0.080 32.110 hybrid contribution 1.539 -0.219 0.061 1.555 sum -22.054 21.562 -0.019 30.843 Atomic orbital electron populations 1.21807 0.94533 1.01915 1.02113 1.21166 0.95993 0.99747 0.94079 0.90529 1.21538 0.93356 1.01067 0.98619 1.21891 0.96998 1.00874 0.96730 1.21318 0.76846 1.01010 0.96424 0.90369 1.45880 1.08120 1.28885 1.50329 1.19923 0.87721 0.82506 0.80263 1.90504 1.69579 1.36396 1.43721 1.20343 0.89042 0.82972 0.79243 1.90702 1.70232 1.36627 1.45347 1.48108 1.08346 1.16365 1.57689 1.22908 0.99556 0.81718 0.99982 1.21749 0.95726 0.97482 0.99666 1.19146 0.93593 0.91854 0.96182 1.21365 0.93674 1.07435 1.33091 0.95034 1.25954 0.99425 0.97146 0.96393 1.70058 1.12076 1.29879 1.47152 0.85859 0.78078 0.78666 0.80007 1.19264 1.16105 1.22780 1.22201 0.98806 0.95391 1.00282 1.21831 0.78576 0.99222 1.01637 1.21381 0.96950 1.00092 0.92511 0.89285 1.21861 1.00797 1.00502 0.97640 1.21611 0.92600 1.01293 0.98506 0.92045 0.92444 0.92877 0.92181 0.91010 0.90791 0.93080 0.74556 0.90414 0.84377 0.91041 0.93777 0.94891 0.92634 0.93068 0.93014 0.89661 0.88922 0.93361 0.90928 0.93174 0.91934 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.20 71.98 0.66 -0.49 16 2 C -0.09 -0.81 2.72 -10.79 -0.03 -0.84 16 3 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 4 C -0.11 -1.24 5.20 30.60 0.16 -1.08 16 5 C -0.13 -1.86 5.49 30.60 0.17 -1.69 16 6 C 0.15 2.36 1.90 44.99 0.09 2.44 16 7 H 0.08 1.54 7.58 -2.39 -0.02 1.52 16 8 N -0.68 -13.40 4.38 -443.88 -1.94 -15.34 16 9 C 0.51 13.64 7.71 87.27 0.67 14.31 16 10 O -0.52 -15.32 12.84 -3.26 -0.04 -15.37 16 11 C 0.50 15.58 7.73 87.27 0.67 16.25 16 12 O -0.55 -18.46 15.93 -3.23 -0.05 -18.51 16 13 N -0.57 -18.93 2.97 -820.48 -2.44 -21.37 16 14 C 0.08 2.56 5.98 86.37 0.52 3.08 16 15 C -0.11 -4.22 5.30 30.67 0.16 -4.06 16 16 C 0.01 0.51 1.66 -11.51 -0.02 0.49 16 17 C -0.52 -29.48 9.14 25.60 0.23 -29.25 16 18 H 0.03 2.00 7.99 -2.91 -0.02 1.97 16 19 C 0.01 0.43 5.45 84.65 0.46 0.90 16 20 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 21 Si 0.95 44.35 24.38 68.60 1.67 46.02 16 22 H -0.27 -11.91 6.86 99.48 0.68 -11.23 16 23 H -0.24 -10.00 6.53 99.48 0.65 -9.35 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 C -0.13 -5.35 4.85 30.67 0.15 -5.21 16 26 C 0.11 3.73 6.44 86.36 0.56 4.29 16 27 C -0.09 -1.02 2.30 -10.80 -0.02 -1.05 16 28 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 29 C -0.15 -1.94 9.03 71.98 0.65 -1.29 16 30 C -0.10 -0.95 4.48 30.59 0.14 -0.81 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.42 7.34 7.88 -92.71 -0.73 6.61 16 39 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.14 4.34 4.32 -47.16 -0.20 4.14 16 41 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 44 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 45 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.05 2.22 3.25 -2.39 -0.01 2.22 16 47 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 48 H 0.09 3.05 7.00 -2.39 -0.02 3.03 16 49 H 0.05 0.73 7.45 -2.39 -0.02 0.71 16 50 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 51 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 52 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 53 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -67.91 397.06 2.60 -65.31 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.12 Total: 22.92 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 5.22 Total: -4.01 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -4.08 Total: -96.37 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -0.09 Total: -33.88 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.67 Total: 46.02 kcal Total: -67.91 2.60 -65.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328830382.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.243 kcal (2) G-P(sol) polarization free energy of solvation -67.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds