Wall clock time and date at job start Tue Mar 31 2020 20:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47049 * 2 1 4 4 C 1.53004 * 109.47123 * 240.00290 * 2 1 3 5 5 C 1.52991 * 109.47120 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47441 * 59.99792 * 5 4 2 7 7 H 1.09001 * 109.47134 * 59.99967 * 6 5 4 8 8 N 1.46498 * 109.47039 * 179.97438 * 6 5 4 9 9 C 1.34778 * 120.00239 * 274.99734 * 8 6 5 10 10 O 1.21348 * 119.99911 * 0.02562 * 9 8 6 11 11 C 1.49452 * 120.00104 * 180.02562 * 9 8 6 12 12 O 1.21341 * 120.00097 * 353.22991 * 11 9 8 13 13 N 1.34775 * 119.99738 * 173.23590 * 11 9 8 14 14 C 1.46927 * 120.63339 * 351.34698 * 13 11 9 15 15 C 1.53185 * 108.77766 * 233.63446 * 14 13 11 16 16 C 1.53046 * 109.31365 * 305.36410 * 15 14 13 17 17 C 1.50695 * 109.45692 * 181.38365 * 16 15 14 18 18 H 1.07993 * 120.00549 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99727 * 179.69745 * 17 16 15 20 20 N 1.31520 * 119.99790 * 0.27883 * 19 17 16 21 21 Si 1.86800 * 120.00148 * 180.27738 * 19 17 16 22 22 H 1.48496 * 109.47127 * 90.00145 * 21 19 17 23 23 H 1.48505 * 109.47021 * 209.99830 * 21 19 17 24 24 H 1.48501 * 109.47101 * 330.00180 * 21 19 17 25 25 C 1.53047 * 109.52451 * 61.37427 * 16 15 14 26 26 C 1.46928 * 120.62739 * 171.37650 * 13 11 9 27 27 C 1.52994 * 109.46879 * 299.99935 * 6 5 4 28 28 H 1.09002 * 109.47001 * 179.97438 * 27 6 5 29 29 C 1.52996 * 109.47614 * 299.99744 * 27 6 5 30 30 C 1.52996 * 109.47371 * 60.00179 * 27 6 5 31 31 H 1.09000 * 109.46970 * 299.99771 * 1 2 3 32 32 H 1.08996 * 109.47196 * 59.99418 * 1 2 3 33 33 H 1.09001 * 109.47049 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46771 * 300.00303 * 4 2 1 35 35 H 1.08992 * 109.46856 * 59.99570 * 4 2 1 36 36 H 1.09001 * 109.46983 * 299.99667 * 5 4 2 37 37 H 1.09000 * 109.46967 * 179.97438 * 5 4 2 38 38 H 0.97000 * 119.99969 * 95.00322 * 8 6 5 39 39 H 1.09008 * 109.58162 * 113.84502 * 14 13 11 40 40 H 1.09005 * 109.58365 * 353.42457 * 14 13 11 41 41 H 1.08997 * 109.49745 * 185.41203 * 15 14 13 42 42 H 1.09001 * 109.52617 * 65.33033 * 15 14 13 43 43 H 1.08997 * 109.46030 * 301.35911 * 16 15 14 44 44 H 0.96997 * 119.99726 * 180.02562 * 20 19 17 45 45 H 1.08993 * 109.49862 * 58.57459 * 25 16 15 46 46 H 1.08994 * 109.49299 * 178.67606 * 25 16 15 47 47 H 1.09008 * 109.58429 * 246.15339 * 26 13 11 48 48 H 1.08997 * 109.58731 * 6.57504 * 26 13 11 49 49 H 1.09002 * 109.46935 * 59.99961 * 29 27 6 50 50 H 1.09000 * 109.47398 * 180.02562 * 29 27 6 51 51 H 1.09005 * 109.46827 * 300.00138 * 29 27 6 52 52 H 1.09001 * 109.47112 * 59.99680 * 30 27 6 53 53 H 1.09000 * 109.47307 * 179.97438 * 30 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0795 -1.4434 0.0002 7 1 3.7158 -2.4709 0.0000 8 7 5.5445 -1.4444 0.0001 9 6 6.2177 -2.4010 -0.6693 10 8 5.6104 -3.2612 -1.2725 11 6 7.7123 -2.4023 -0.6689 12 8 8.3197 -1.4771 -0.1716 13 7 8.3853 -3.4312 -1.2212 14 6 7.6762 -4.6422 -1.6564 15 6 8.3346 -5.8610 -1.0024 16 6 9.8313 -5.8600 -1.3218 17 6 10.4762 -7.0761 -0.7084 18 1 9.8788 -7.7788 -0.1467 19 6 11.8281 -7.2944 -0.8691 20 7 12.5557 -6.4385 -1.5531 21 14 12.6263 -8.8058 -0.1153 22 1 12.5820 -9.9264 -1.0886 23 1 14.0393 -8.5015 0.2254 24 1 11.8919 -9.1909 1.1167 25 6 10.4761 -4.5965 -0.7474 26 6 9.8422 -3.3633 -1.3988 27 6 3.5696 -0.7221 1.2494 28 1 3.9322 -1.2365 2.1394 29 6 4.0800 0.7201 1.2498 30 6 2.0396 -0.7216 1.2492 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6767 -1.7488 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.9337 0.3058 -1.2488 37 1 3.9333 -1.2360 -2.1388 38 1 6.0300 -0.7566 0.4820 39 1 7.7377 -4.7316 -2.7411 40 1 6.6314 -4.5834 -1.3512 41 1 7.8802 -6.7722 -1.3912 42 1 8.1930 -5.8159 0.0774 43 1 9.9720 -5.8805 -2.4025 44 1 13.5067 -6.5924 -1.6664 45 1 10.3141 -4.5628 0.3299 46 1 11.5461 -4.6077 -0.9547 47 1 10.0803 -3.3485 -2.4625 48 1 10.2266 -2.4608 -0.9237 49 1 3.7171 1.2343 0.3598 50 1 3.7171 1.2338 2.1400 51 1 5.1701 0.7197 1.2500 52 1 1.6759 -1.7492 1.2490 53 1 1.6763 -0.2082 2.1394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328830383.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:09 Heat of formation + Delta-G solvation = -104.243984 kcal Electronic energy + Delta-G solvation = -30367.384550 eV Core-core repulsion = 26430.357985 eV Total energy + Delta-G solvation = -3937.026565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.13840 -40.74613 -39.36336 -38.59661 -36.05474 -35.23176 -33.20007 -32.93703 -32.02878 -31.86848 -28.47786 -27.77006 -27.34160 -25.62603 -24.31009 -23.72311 -23.23790 -21.96694 -21.49667 -20.69298 -19.64841 -18.61689 -18.51035 -18.02506 -17.15631 -16.98716 -16.51713 -16.48123 -15.77073 -15.63824 -15.35948 -15.24832 -15.03079 -14.84559 -14.60724 -14.51918 -14.38251 -13.96402 -13.81891 -13.66169 -13.47639 -13.12332 -13.07962 -12.88903 -12.83557 -12.58130 -12.50973 -12.38770 -12.29036 -12.16267 -11.98649 -11.96087 -11.82486 -11.48007 -11.44044 -11.21292 -11.03035 -10.96406 -10.87259 -10.45440 -10.31856 -10.03132 -9.70625 -8.08681 -6.22552 0.30219 1.28584 1.40949 1.42277 1.51789 2.07441 2.42982 2.47293 3.17558 3.25199 3.62676 3.70074 3.88836 4.06058 4.10575 4.20678 4.27717 4.30494 4.33347 4.39385 4.42624 4.44220 4.55267 4.58787 4.68311 4.74025 4.78210 4.80349 4.91293 4.93409 4.95395 5.01397 5.03101 5.10790 5.13582 5.16590 5.18475 5.24759 5.28242 5.34526 5.36720 5.42137 5.42499 5.48242 5.50574 5.62349 5.65981 5.95120 6.00579 6.08037 6.29207 6.36936 6.67066 6.87393 6.90709 7.45260 8.94938 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.027105 B = 0.002233 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.752816 B =12533.878015 C =12804.470257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.080 0.920 4 C -0.107 4.107 5 C -0.128 4.128 6 C 0.146 3.854 7 H 0.079 0.921 8 N -0.683 5.683 9 C 0.515 3.485 10 O -0.524 6.524 11 C 0.497 3.503 12 O -0.554 6.554 13 N -0.571 5.571 14 C 0.080 3.920 15 C -0.115 4.115 16 C 0.043 3.957 17 C -0.533 4.533 18 H 0.051 0.949 19 C 0.013 3.987 20 N -0.914 5.914 21 Si 0.952 3.048 22 H -0.276 1.276 23 H -0.284 1.284 24 H -0.271 1.271 25 C -0.110 4.110 26 C 0.115 3.885 27 C -0.094 4.094 28 H 0.077 0.923 29 C -0.155 4.155 30 C -0.102 4.102 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.048 0.952 38 H 0.416 0.584 39 H 0.068 0.932 40 H 0.139 0.861 41 H 0.069 0.931 42 H 0.044 0.956 43 H 0.004 0.996 44 H 0.261 0.739 45 H 0.025 0.975 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.072 0.928 51 H 0.049 0.951 52 H 0.063 0.937 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.512 15.947 3.829 28.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.098 0.902 4 C -0.145 4.145 5 C -0.167 4.167 6 C 0.043 3.957 7 H 0.097 0.903 8 N -0.335 5.335 9 C 0.296 3.704 10 O -0.402 6.402 11 C 0.280 3.720 12 O -0.434 6.434 13 N -0.303 5.303 14 C -0.041 4.041 15 C -0.153 4.153 16 C 0.024 3.976 17 C -0.571 4.571 18 H 0.069 0.931 19 C -0.186 4.186 20 N -0.554 5.554 21 Si 0.778 3.222 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.149 4.149 26 C -0.007 4.007 27 C -0.113 4.113 28 H 0.096 0.904 29 C -0.212 4.212 30 C -0.140 4.140 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.254 0.746 39 H 0.086 0.914 40 H 0.155 0.845 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.022 0.978 44 H 0.070 0.930 45 H 0.044 0.956 46 H 0.097 0.903 47 H 0.089 0.911 48 H 0.100 0.900 49 H 0.088 0.912 50 H 0.091 0.909 51 H 0.068 0.932 52 H 0.082 0.918 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.443 15.843 3.606 28.524 hybrid contribution 1.472 -0.841 0.312 1.723 sum -21.972 15.003 3.918 26.892 Atomic orbital electron populations 1.21809 0.94550 1.01901 1.02088 1.21204 0.95912 0.99985 0.94004 0.90207 1.21526 0.93212 1.01100 0.98655 1.21921 0.97134 1.01032 0.96588 1.21293 0.76749 1.00876 0.96789 0.90259 1.45991 1.08240 1.28883 1.50418 1.19946 0.87692 0.82498 0.80234 1.90492 1.69542 1.36477 1.43696 1.20391 0.89097 0.83033 0.79512 1.90685 1.70270 1.36765 1.45687 1.48202 1.08608 1.16196 1.57245 1.22874 0.99441 0.82259 0.99511 1.21895 0.97100 0.96996 0.99356 1.18650 0.91064 0.92976 0.94867 1.21549 0.93858 1.08089 1.33588 0.93069 1.25720 0.98027 0.99149 0.95674 1.69968 1.06841 1.36952 1.41638 0.85642 0.77578 0.80058 0.78874 1.20128 1.20964 1.19600 1.21768 1.02094 0.93872 0.97174 1.21813 0.78135 0.99888 1.00847 1.21356 0.97093 0.96943 0.95891 0.90447 1.21996 1.00606 0.95231 1.03349 1.21580 0.92548 1.01274 0.98635 0.92028 0.92489 0.92883 0.92165 0.91035 0.90561 0.93348 0.74565 0.91411 0.84452 0.91204 0.93746 0.97831 0.92958 0.95600 0.90307 0.91122 0.90016 0.91217 0.90924 0.93193 0.91821 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.19 71.98 0.66 -0.56 16 2 C -0.09 -0.89 2.45 -10.79 -0.03 -0.92 16 3 H 0.08 0.71 6.43 -2.39 -0.02 0.70 16 4 C -0.11 -1.34 5.20 30.59 0.16 -1.18 16 5 C -0.13 -2.08 5.22 30.59 0.16 -1.93 16 6 C 0.15 2.57 2.15 44.99 0.10 2.67 16 7 H 0.08 1.65 7.58 -2.39 -0.02 1.63 16 8 N -0.68 -15.08 4.99 -443.88 -2.21 -17.29 16 9 C 0.52 15.12 7.70 87.27 0.67 15.79 16 10 O -0.52 -16.66 12.85 -3.24 -0.04 -16.70 16 11 C 0.50 17.36 7.73 87.27 0.67 18.03 16 12 O -0.55 -20.81 15.93 -3.22 -0.05 -20.86 16 13 N -0.57 -21.49 2.97 -820.47 -2.44 -23.93 16 14 C 0.08 2.91 5.98 86.36 0.52 3.43 16 15 C -0.12 -4.80 5.30 30.67 0.16 -4.64 16 16 C 0.04 2.14 2.06 -11.51 -0.02 2.12 16 17 C -0.53 -29.33 8.56 25.60 0.22 -29.11 16 18 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 19 C 0.01 0.72 5.31 84.66 0.45 1.17 16 20 N -0.91 -52.19 11.32 21.45 0.24 -51.95 16 21 Si 0.95 43.70 29.54 68.60 2.03 45.73 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 25 C -0.11 -5.30 5.16 30.68 0.16 -5.14 16 26 C 0.11 4.67 6.44 86.36 0.56 5.22 16 27 C -0.09 -1.17 2.88 -10.80 -0.03 -1.20 16 28 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 29 C -0.15 -1.66 8.33 71.98 0.60 -1.06 16 30 C -0.10 -1.02 4.73 30.59 0.14 -0.87 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 33 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 1.12 6.43 -2.39 -0.02 1.11 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.42 8.44 6.36 -92.71 -0.59 7.85 16 39 H 0.07 2.39 8.14 -2.38 -0.02 2.38 16 40 H 0.14 4.74 4.32 -47.40 -0.20 4.54 16 41 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 44 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 45 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.08 4.21 6.05 -2.39 -0.01 4.20 16 47 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 48 H 0.08 3.25 7.00 -2.39 -0.02 3.23 16 49 H 0.07 0.70 4.81 -2.39 -0.01 0.69 16 50 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.05 0.60 6.51 -2.38 -0.02 0.59 16 52 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 53 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -62.48 395.10 2.79 -59.69 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.12 Total: 23.49 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 5.15 Total: 1.82 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -4.41 Total: -93.17 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -0.09 Total: -37.56 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -62.48 2.79 -59.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328830383.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.556 kcal (2) G-P(sol) polarization free energy of solvation -62.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds