Wall clock time and date at job start Tue Mar 31 2020 20:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46888 * 2 1 4 4 C 1.52998 * 109.46725 * 120.00156 * 2 1 3 5 5 C 1.52995 * 109.47175 * 60.00312 * 4 2 1 6 6 N 1.46507 * 109.46898 * 179.97438 * 5 4 2 7 7 C 1.34784 * 119.99835 * 154.99430 * 6 5 4 8 8 O 1.21350 * 119.99873 * 0.02562 * 7 6 5 9 9 C 1.49446 * 119.99935 * 180.02562 * 7 6 5 10 10 O 1.21348 * 119.99875 * 353.23179 * 9 7 6 11 11 N 1.34778 * 120.00214 * 173.23655 * 9 7 6 12 12 C 1.46923 * 120.63421 * 171.35329 * 11 9 7 13 13 C 1.53183 * 108.77660 * 126.41043 * 12 11 9 14 14 C 1.53042 * 109.31310 * 54.63386 * 13 12 11 15 15 C 1.50703 * 109.45894 * 178.62851 * 14 13 12 16 16 H 1.07996 * 120.00584 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99715 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00125 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99832 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47032 * 89.99387 * 19 17 15 21 21 H 1.48503 * 109.46804 * 209.99436 * 19 17 15 22 22 H 1.48495 * 109.47031 * 329.99404 * 19 17 15 23 23 C 1.53037 * 109.52669 * 298.64117 * 14 13 12 24 24 C 1.46924 * 120.62609 * 351.37247 * 11 9 7 25 25 C 1.52991 * 109.47579 * 59.99389 * 5 4 2 26 26 C 1.52998 * 109.47366 * 300.00494 * 25 5 4 27 27 H 1.09004 * 109.46842 * 299.99662 * 26 25 5 28 28 C 1.52999 * 109.47190 * 180.02562 * 26 25 5 29 29 C 1.52996 * 109.47051 * 240.00320 * 2 1 3 30 30 H 1.09009 * 109.46841 * 300.00044 * 1 2 3 31 31 H 1.08998 * 109.46840 * 59.99692 * 1 2 3 32 32 H 1.08996 * 109.47254 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47545 * 299.99682 * 4 2 1 34 34 H 1.09004 * 109.46842 * 179.97438 * 4 2 1 35 35 H 1.08997 * 109.46970 * 299.99162 * 5 4 2 36 36 H 0.96994 * 120.00217 * 335.00634 * 6 5 4 37 37 H 1.09003 * 109.58303 * 6.62418 * 12 11 9 38 38 H 1.09003 * 109.70075 * 246.26995 * 12 11 9 39 39 H 1.08999 * 109.49774 * 294.68617 * 13 12 11 40 40 H 1.08996 * 109.52481 * 174.60322 * 13 12 11 41 41 H 1.08997 * 109.45678 * 58.65645 * 14 13 12 42 42 H 0.96998 * 119.99693 * 180.02562 * 18 17 15 43 43 H 1.09003 * 109.49368 * 181.30651 * 23 14 13 44 44 H 1.08993 * 109.50255 * 301.40518 * 23 14 13 45 45 H 1.09005 * 109.59065 * 353.37561 * 24 11 9 46 46 H 1.08999 * 109.58872 * 113.65822 * 24 11 9 47 47 H 1.09004 * 109.46864 * 60.00143 * 25 5 4 48 48 H 1.09003 * 109.47668 * 179.97438 * 25 5 4 49 49 H 1.09004 * 109.46858 * 299.99537 * 28 26 25 50 50 H 1.08996 * 109.47662 * 59.99704 * 28 26 25 51 51 H 1.08998 * 109.47009 * 179.97438 * 28 26 25 52 52 H 1.09002 * 109.47132 * 59.99542 * 29 2 1 53 53 H 1.08991 * 109.47219 * 180.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2491 6 7 2.0188 -2.8546 2.4451 7 6 1.3421 -3.9115 2.9367 8 8 0.3282 -4.2911 2.3885 9 6 1.8403 -4.6158 4.1570 10 8 2.9155 -4.3168 4.6336 11 7 1.0956 -5.5831 4.7281 12 6 1.6467 -6.4127 5.8083 13 6 0.6963 -6.3547 7.0083 14 6 -0.7100 -6.7591 6.5602 15 6 -1.6407 -6.7356 7.7453 16 1 -1.2669 -6.4596 8.7202 17 6 -2.9695 -7.0666 7.5850 18 7 -3.4250 -7.4023 6.3977 19 14 -4.1233 -7.0369 9.0538 20 1 -4.7311 -5.6877 9.1786 21 1 -5.1950 -8.0469 8.8619 22 1 -3.3610 -7.3526 10.2885 23 6 -1.2111 -5.7767 5.4990 24 6 -0.2826 -5.8283 4.2820 25 6 2.0399 -2.8850 -0.0001 26 6 1.5300 -2.1637 -1.2493 27 1 0.4399 -2.1636 -1.2493 28 6 2.0394 -2.8853 -2.4985 29 6 2.0400 -0.7212 -1.2492 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6767 -0.2075 2.1393 34 1 3.1300 -0.7217 1.2490 35 1 0.4400 -2.1637 1.2492 36 1 2.8293 -2.5513 2.8832 37 1 2.6256 -6.0313 6.0987 38 1 1.7424 -7.4436 5.4675 39 1 0.6737 -5.3400 7.4057 40 1 1.0432 -7.0405 7.7812 41 1 -0.6822 -7.7645 6.1402 42 1 -4.3599 -7.6348 6.2849 43 1 -2.2217 -6.0517 5.1971 44 1 -1.2157 -4.7675 5.9107 45 1 -0.5767 -5.0614 3.5653 46 1 -0.3457 -6.8102 3.8129 47 1 3.1299 -2.8850 0.0000 48 1 1.6769 -3.9128 0.0001 49 1 3.1295 -2.8857 -2.4987 50 1 1.6757 -3.9128 -2.4984 51 1 1.6758 -2.3717 -3.3885 52 1 1.6766 -0.2073 -2.1392 53 1 3.1299 -0.7216 -1.2490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329063355.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:22 Heat of formation + Delta-G solvation = -106.177320 kcal Electronic energy + Delta-G solvation = -30459.272420 eV Core-core repulsion = 26522.162019 eV Total energy + Delta-G solvation = -3937.110401 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.10207 -40.68202 -39.38842 -38.58612 -35.99303 -35.17651 -34.04815 -33.03868 -31.77596 -31.07497 -28.37332 -27.70792 -27.36461 -26.22794 -24.31599 -23.96417 -22.71068 -22.02465 -21.64756 -20.63902 -19.58405 -18.64647 -18.30461 -18.08378 -17.21223 -16.95857 -16.52857 -16.34887 -15.91720 -15.71197 -15.33699 -15.18572 -14.85111 -14.80875 -14.64458 -14.55665 -14.42102 -14.27352 -13.95555 -13.50400 -13.40085 -13.20725 -13.08262 -12.82181 -12.76626 -12.53522 -12.52281 -12.36718 -12.29416 -12.15896 -12.00359 -11.96072 -11.79057 -11.53162 -11.41112 -11.28478 -11.03811 -11.00711 -10.83694 -10.46627 -10.31857 -10.00897 -9.69551 -8.07924 -6.21945 0.30780 1.29442 1.40984 1.42320 1.51848 2.08089 2.43411 2.46743 3.18446 3.25501 3.63231 3.74557 3.91715 4.07905 4.09596 4.14870 4.26081 4.29730 4.34920 4.38109 4.40512 4.48756 4.54416 4.56249 4.69753 4.75985 4.77637 4.81026 4.84000 4.92466 4.96205 4.99443 5.01938 5.11863 5.14415 5.16492 5.18099 5.24078 5.28089 5.32981 5.37373 5.41349 5.45153 5.46412 5.52841 5.61979 5.62328 5.95434 6.03056 6.09550 6.27751 6.37556 6.68610 6.88111 6.92731 7.45852 8.95710 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017451 B = 0.002509 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.138357 B =11155.975285 C =11747.639164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.082 4.082 3 H 0.092 0.908 4 C -0.118 4.118 5 C 0.139 3.861 6 N -0.682 5.682 7 C 0.511 3.489 8 O -0.527 6.527 9 C 0.500 3.500 10 O -0.550 6.550 11 N -0.571 5.571 12 C 0.112 3.888 13 C -0.113 4.113 14 C 0.043 3.957 15 C -0.534 4.534 16 H 0.051 0.949 17 C 0.014 3.986 18 N -0.914 5.914 19 Si 0.951 3.049 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.269 1.269 23 C -0.112 4.112 24 C 0.083 3.917 25 C -0.120 4.120 26 C -0.089 4.089 27 H 0.067 0.933 28 C -0.145 4.145 29 C -0.106 4.106 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.418 0.582 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.003 0.997 42 H 0.261 0.739 43 H 0.076 0.924 44 H 0.024 0.976 45 H 0.128 0.872 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.044 0.956 49 H 0.059 0.941 50 H 0.044 0.956 51 H 0.065 0.935 52 H 0.074 0.926 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.918 14.770 -17.057 25.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.101 4.101 3 H 0.110 0.890 4 C -0.156 4.156 5 C 0.036 3.964 6 N -0.334 5.334 7 C 0.292 3.708 8 O -0.405 6.405 9 C 0.283 3.717 10 O -0.430 6.430 11 N -0.302 5.302 12 C -0.010 4.010 13 C -0.151 4.151 14 C 0.024 3.976 15 C -0.572 4.572 16 H 0.069 0.931 17 C -0.185 4.185 18 N -0.553 5.553 19 Si 0.777 3.223 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.151 4.151 24 C -0.038 4.038 25 C -0.158 4.158 26 C -0.108 4.108 27 H 0.085 0.915 28 C -0.202 4.202 29 C -0.143 4.143 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.256 0.744 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.022 0.978 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.043 0.957 45 H 0.145 0.855 46 H 0.077 0.923 47 H 0.093 0.907 48 H 0.063 0.937 49 H 0.078 0.922 50 H 0.063 0.937 51 H 0.084 0.916 52 H 0.093 0.907 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.600 14.590 -17.276 25.886 hybrid contribution -0.792 -0.463 1.247 1.548 sum 11.807 14.126 -16.029 24.411 Atomic orbital electron populations 1.22003 0.95691 1.01666 1.02096 1.21052 0.95573 0.99860 0.93616 0.89020 1.21855 1.02107 0.92109 0.99498 1.21329 0.99752 0.92482 0.82875 1.45894 1.28788 1.29385 1.29376 1.20069 0.83956 0.81872 0.84913 1.90531 1.24534 1.65172 1.60304 1.20271 0.85033 0.81174 0.85234 1.90678 1.22979 1.65016 1.64336 1.48194 1.14622 1.32540 1.34872 1.21843 0.97780 0.94581 0.86791 1.21850 0.96015 1.00719 0.96515 1.18648 0.91331 0.93770 0.93817 1.21547 0.94700 1.45750 0.95172 0.93075 1.25708 0.99725 0.94876 0.98183 1.69979 1.15324 1.46813 1.23202 0.85658 0.78688 0.77724 0.80184 1.20409 1.20876 1.19392 1.21791 1.00173 0.97904 0.95232 1.22801 0.78952 1.03716 0.98313 1.21945 1.01410 0.98653 0.93834 1.21117 1.00451 0.95553 0.93704 0.91505 1.21800 1.01434 0.99857 0.97153 1.21645 1.01108 0.93860 0.97725 0.92917 0.91691 0.93273 0.91022 0.89620 0.90375 0.74432 0.88742 0.90336 0.93662 0.90942 0.97841 0.92978 0.90525 0.95721 0.85479 0.92326 0.90735 0.93730 0.92152 0.93653 0.91617 0.90702 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 8.50 71.98 0.61 -1.45 16 2 C -0.08 -0.88 3.19 -10.79 -0.03 -0.92 16 3 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.12 -1.52 4.92 30.59 0.15 -1.36 16 5 C 0.14 2.62 2.18 44.99 0.10 2.72 16 6 N -0.68 -15.55 5.07 -443.87 -2.25 -17.80 16 7 C 0.51 15.74 7.70 87.27 0.67 16.41 16 8 O -0.53 -18.50 12.85 -3.25 -0.04 -18.54 16 9 C 0.50 17.36 7.73 87.27 0.67 18.03 16 10 O -0.55 -19.65 15.93 -3.24 -0.05 -19.70 16 11 N -0.57 -21.39 2.97 -820.56 -2.44 -23.83 16 12 C 0.11 4.00 6.44 86.36 0.56 4.56 16 13 C -0.11 -4.66 5.30 30.67 0.16 -4.49 16 14 C 0.04 2.13 2.06 -11.51 -0.02 2.11 16 15 C -0.53 -29.35 8.56 25.60 0.22 -29.13 16 16 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 17 C 0.01 0.77 5.30 84.65 0.45 1.21 16 18 N -0.91 -52.36 11.31 21.45 0.24 -52.12 16 19 Si 0.95 43.70 29.54 68.60 2.03 45.72 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 C -0.11 -5.41 5.15 30.66 0.16 -5.25 16 24 C 0.08 3.40 5.98 86.35 0.52 3.91 16 25 C -0.12 -2.13 4.77 30.59 0.15 -1.98 16 26 C -0.09 -1.25 2.44 -10.79 -0.03 -1.28 16 27 H 0.07 1.08 6.43 -2.38 -0.02 1.07 16 28 C -0.15 -1.85 9.19 71.98 0.66 -1.19 16 29 C -0.11 -1.08 4.73 30.59 0.14 -0.93 16 30 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.79 4.81 -2.39 -0.01 0.78 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.08 1.81 5.87 -2.39 -0.01 1.79 16 36 H 0.42 8.21 8.09 -92.71 -0.75 7.46 16 37 H 0.09 3.15 7.01 -2.39 -0.02 3.13 16 38 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.26 14.28 8.31 -92.71 -0.77 13.50 16 43 H 0.08 4.14 6.03 -2.39 -0.01 4.13 16 44 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.13 5.14 4.32 -47.36 -0.20 4.93 16 46 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 48 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 50 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 52 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 53 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -63.17 398.31 2.58 -60.59 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -0.05 Total: 24.70 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 5.14 Total: 0.97 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -4.45 Total: -93.74 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.09 Total: -38.25 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -63.17 2.58 -60.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329063355.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.587 kcal (2) G-P(sol) polarization free energy of solvation -63.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds