Wall clock time and date at job start Tue Mar 31 2020 20:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46758 * 2 1 4 4 C 1.53001 * 109.47073 * 240.00007 * 2 1 3 5 5 C 1.52991 * 109.47113 * 179.97438 * 4 2 1 6 6 N 1.46501 * 109.47240 * 179.97438 * 5 4 2 7 7 C 1.34773 * 120.00200 * 154.99975 * 6 5 4 8 8 O 1.21351 * 119.99860 * 0.02562 * 7 6 5 9 9 C 1.49448 * 120.00077 * 180.27906 * 7 6 5 10 10 O 1.21344 * 120.00148 * 6.12050 * 9 7 6 11 11 N 1.34783 * 119.99925 * 186.13047 * 9 7 6 12 12 C 1.46927 * 120.62809 * 186.80496 * 11 9 7 13 13 C 1.53629 * 108.54335 * 126.36408 * 12 11 9 14 14 C 1.53047 * 109.23873 * 54.85322 * 13 12 11 15 15 C 1.50699 * 109.45877 * 178.48934 * 14 13 12 16 16 H 1.08004 * 119.99977 * 120.06567 * 15 14 13 17 17 C 1.37878 * 120.00215 * 300.07283 * 15 14 13 18 18 N 1.31515 * 119.99942 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00362 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46379 * 59.99835 * 19 17 15 21 21 H 1.48496 * 109.47314 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46905 * 300.00144 * 19 17 15 23 23 C 1.53038 * 109.54053 * 298.51038 * 14 13 12 24 24 C 1.46923 * 120.63081 * 7.08084 * 11 9 7 25 25 C 1.53004 * 109.47081 * 60.00337 * 5 4 2 26 26 C 1.53001 * 109.46872 * 299.99811 * 25 5 4 27 27 H 1.09005 * 109.46816 * 180.02562 * 26 25 5 28 28 C 1.52999 * 109.47335 * 299.99669 * 26 25 5 29 29 C 1.52997 * 109.47032 * 119.99840 * 2 1 3 30 30 H 1.08997 * 109.47011 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46553 * 299.99996 * 1 2 3 32 32 H 1.09002 * 109.46780 * 59.99699 * 1 2 3 33 33 H 1.09005 * 109.46816 * 59.99750 * 4 2 1 34 34 H 1.08997 * 109.46935 * 300.00209 * 4 2 1 35 35 H 1.08997 * 109.47605 * 300.00062 * 5 4 2 36 36 H 0.97004 * 120.00047 * 335.00656 * 6 5 4 37 37 H 1.08997 * 109.58834 * 246.19700 * 12 11 9 38 38 H 1.09000 * 109.58678 * 6.62487 * 12 11 9 39 39 H 1.09003 * 109.63212 * 294.86598 * 13 12 11 40 40 H 1.08993 * 109.45539 * 174.73772 * 13 12 11 41 41 H 1.09005 * 109.45506 * 58.53509 * 14 13 12 42 42 H 0.97005 * 120.00243 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.49883 * 301.41808 * 23 14 13 44 44 H 1.08996 * 109.49891 * 181.31642 * 23 14 13 45 45 H 1.09000 * 109.58831 * 353.37724 * 24 11 9 46 46 H 1.09003 * 109.58804 * 113.66238 * 24 11 9 47 47 H 1.08997 * 109.47125 * 59.99431 * 25 5 4 48 48 H 1.09000 * 109.46982 * 179.97438 * 25 5 4 49 49 H 1.08993 * 109.47681 * 179.97438 * 28 26 25 50 50 H 1.09000 * 109.47240 * 300.00583 * 28 26 25 51 51 H 1.09007 * 109.46729 * 59.99931 * 28 26 25 52 52 H 1.08993 * 109.47437 * 299.99994 * 29 2 1 53 53 H 1.09004 * 109.47219 * 60.00442 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 7 4.0583 -1.4118 -2.4454 7 6 5.2800 -1.1259 -2.9374 8 8 5.9758 -0.2962 -2.3895 9 6 5.7757 -1.8264 -4.1609 10 8 5.0387 -2.5693 -4.7753 11 7 7.0414 -1.6333 -4.5819 12 6 7.4989 -2.1943 -5.8605 13 6 8.1017 -1.0605 -6.7037 14 6 9.1976 -0.3599 -5.8971 15 6 9.8178 0.7295 -6.7334 16 1 9.7826 1.7551 -6.3966 17 6 10.4302 0.4171 -7.9286 18 7 10.4735 -0.8318 -8.3385 19 14 11.1985 1.7676 -8.9656 20 1 12.2628 2.4469 -8.1839 21 1 11.7881 1.1746 -10.1927 22 1 10.1557 2.7547 -9.3441 23 6 8.5906 0.2514 -4.6322 24 6 7.9916 -0.8628 -3.7682 25 6 4.0805 -1.4417 -0.0004 26 6 3.5705 -0.7204 1.2489 27 1 3.9346 -1.2338 2.1389 28 6 4.0801 0.7222 1.2487 29 6 2.0400 -0.7212 1.2492 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6766 -0.2074 -2.1392 34 1 1.6767 -1.7489 -1.2492 35 1 3.9330 0.3070 -1.2498 36 1 3.5023 -2.0752 -2.8833 37 1 8.2549 -2.9572 -5.6751 38 1 6.6538 -2.6352 -6.3892 39 1 7.3236 -0.3418 -6.9610 40 1 8.5302 -1.4750 -7.6162 41 1 9.9631 -1.0844 -5.6190 42 1 10.9046 -1.0517 -9.1792 43 1 7.8078 0.9577 -4.9090 44 1 9.3671 0.7701 -4.0701 45 1 7.4719 -0.4250 -2.9160 46 1 8.7858 -1.5199 -3.4135 47 1 3.7175 -2.4694 -0.0001 48 1 5.1705 -1.4417 -0.0008 49 1 3.7164 1.2362 2.1384 50 1 5.1701 0.7226 1.2484 51 1 3.7164 1.2358 0.3586 52 1 1.6767 -0.2074 2.1392 53 1 1.6767 -1.7489 1.2492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329063364.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:26 Heat of formation + Delta-G solvation = -102.438569 kcal Electronic energy + Delta-G solvation = -30416.374359 eV Core-core repulsion = 26479.426083 eV Total energy + Delta-G solvation = -3936.948277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.12564 -40.66878 -39.37596 -38.60328 -36.01167 -35.17013 -34.03742 -32.94487 -31.84733 -31.08611 -28.32386 -27.69916 -27.30207 -26.23788 -24.40366 -23.86341 -22.82688 -22.18739 -21.38165 -20.56857 -19.61519 -18.69561 -18.50841 -18.00633 -17.09510 -16.89599 -16.50941 -16.43508 -15.91500 -15.73136 -15.50603 -15.05846 -14.93622 -14.80439 -14.59202 -14.49983 -14.48330 -14.25879 -13.86633 -13.56303 -13.47779 -13.07954 -13.06319 -12.81636 -12.66859 -12.59212 -12.51675 -12.41616 -12.34212 -12.12368 -11.96862 -11.93555 -11.76566 -11.46996 -11.43583 -11.20557 -11.11300 -11.03926 -10.88322 -10.45306 -10.19888 -9.99371 -9.69690 -8.08648 -6.22730 0.29568 1.28730 1.41706 1.42344 1.50055 2.09011 2.42981 2.47033 3.17252 3.24047 3.64958 3.73390 3.92143 4.10032 4.12194 4.16723 4.29287 4.34268 4.34746 4.39398 4.41664 4.42828 4.55918 4.58513 4.67619 4.74895 4.80309 4.82078 4.86247 4.94048 4.97826 5.02664 5.04111 5.08600 5.13713 5.18591 5.19141 5.27095 5.29924 5.35937 5.39808 5.42736 5.46660 5.48996 5.54429 5.62198 5.63246 5.95375 6.01360 6.08566 6.30724 6.37241 6.69537 6.87062 6.91943 7.45019 8.94701 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022522 B = 0.002337 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.907984 B =11979.384263 C =12345.421566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.072 0.928 4 C -0.117 4.117 5 C 0.139 3.861 6 N -0.681 5.681 7 C 0.517 3.483 8 O -0.520 6.520 9 C 0.497 3.503 10 O -0.554 6.554 11 N -0.569 5.569 12 C 0.115 3.885 13 C -0.111 4.111 14 C 0.043 3.957 15 C -0.534 4.534 16 H 0.050 0.950 17 C 0.014 3.986 18 N -0.915 5.915 19 Si 0.952 3.048 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.275 1.275 23 C -0.109 4.109 24 C 0.057 3.943 25 C -0.122 4.122 26 C -0.084 4.084 27 H 0.079 0.921 28 C -0.153 4.153 29 C -0.106 4.106 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.418 0.582 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.025 0.975 40 H 0.079 0.921 41 H 0.003 0.997 42 H 0.262 0.738 43 H 0.041 0.959 44 H 0.066 0.934 45 H 0.157 0.843 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.049 0.951 49 H 0.065 0.935 50 H 0.043 0.957 51 H 0.055 0.945 52 H 0.074 0.926 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.700 -1.540 20.659 28.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.090 0.910 4 C -0.155 4.155 5 C 0.036 3.964 6 N -0.333 5.333 7 C 0.298 3.702 8 O -0.398 6.398 9 C 0.280 3.720 10 O -0.434 6.434 11 N -0.300 5.300 12 C -0.007 4.007 13 C -0.149 4.149 14 C 0.024 3.976 15 C -0.572 4.572 16 H 0.068 0.932 17 C -0.185 4.185 18 N -0.554 5.554 19 Si 0.778 3.222 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.200 1.200 23 C -0.147 4.147 24 C -0.063 4.063 25 C -0.161 4.161 26 C -0.103 4.103 27 H 0.098 0.902 28 C -0.210 4.210 29 C -0.144 4.144 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.255 0.745 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.043 0.957 40 H 0.097 0.903 41 H 0.021 0.979 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.085 0.915 45 H 0.173 0.827 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.068 0.932 49 H 0.084 0.916 50 H 0.063 0.937 51 H 0.074 0.926 52 H 0.092 0.908 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.526 -1.448 20.574 28.401 hybrid contribution 0.828 0.283 -1.461 1.703 sum -18.699 -1.165 19.112 26.763 Atomic orbital electron populations 1.21798 0.94019 1.02295 1.02081 1.21106 0.96212 0.99687 0.93666 0.90966 1.21875 0.91538 1.02710 0.99389 1.21342 0.95437 0.96805 0.82787 1.45916 1.15758 1.42379 1.29221 1.19972 0.83273 0.82784 0.84151 1.90320 1.54411 1.34418 1.60677 1.20341 0.82617 0.82673 0.86413 1.90686 1.56078 1.38094 1.58547 1.48210 1.10140 1.50558 1.21134 1.21893 0.99017 0.96457 0.83299 1.21860 0.97046 0.95830 1.00207 1.18656 0.92583 0.94382 0.91948 1.21529 1.35921 0.94235 1.05548 0.93165 1.25712 0.96530 0.97464 0.98783 1.69957 1.44644 1.18472 1.22337 0.85707 0.78798 0.79581 0.78134 1.19663 1.20877 1.20003 1.21774 0.98989 0.97038 0.96870 1.23288 0.93113 0.93574 0.96353 1.21935 1.00281 0.99927 0.93945 1.21061 0.96200 0.96082 0.96973 0.90232 1.21949 1.00563 0.96349 1.02117 1.21652 0.93778 1.01213 0.97724 0.92170 0.91916 0.92759 0.91178 0.89957 0.90013 0.74457 0.91207 0.90082 0.95661 0.90259 0.97890 0.92928 0.94030 0.91546 0.82727 0.91686 0.90742 0.93172 0.91635 0.93746 0.92648 0.90761 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.19 71.98 0.66 -0.54 16 2 C -0.09 -0.89 2.45 -10.79 -0.03 -0.91 16 3 H 0.07 0.83 6.43 -2.38 -0.02 0.81 16 4 C -0.12 -1.42 4.67 30.59 0.14 -1.28 16 5 C 0.14 2.40 2.18 44.99 0.10 2.50 16 6 N -0.68 -14.60 5.07 -443.88 -2.25 -16.85 16 7 C 0.52 15.04 7.74 87.27 0.68 15.72 16 8 O -0.52 -16.59 12.76 -3.25 -0.04 -16.64 16 9 C 0.50 17.24 7.74 87.27 0.68 17.91 16 10 O -0.55 -20.51 15.94 -3.23 -0.05 -20.56 16 11 N -0.57 -21.44 2.97 -819.62 -2.43 -23.87 16 12 C 0.12 4.70 6.44 86.51 0.56 5.26 16 13 C -0.11 -5.36 5.17 30.82 0.16 -5.20 16 14 C 0.04 2.16 2.06 -11.51 -0.02 2.14 16 15 C -0.53 -29.70 8.56 25.60 0.22 -29.48 16 16 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 17 C 0.01 0.77 5.30 84.65 0.45 1.22 16 18 N -0.91 -52.43 11.31 21.45 0.24 -52.19 16 19 Si 0.95 43.90 29.54 68.60 2.03 45.93 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 23 C -0.11 -4.61 5.30 30.67 0.16 -4.45 16 24 C 0.06 2.08 6.27 86.37 0.54 2.62 16 25 C -0.12 -1.94 5.02 30.60 0.15 -1.78 16 26 C -0.08 -1.03 3.19 -10.78 -0.03 -1.07 16 27 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 28 C -0.15 -2.13 8.50 71.98 0.61 -1.52 16 29 C -0.11 -0.98 4.74 30.61 0.14 -0.84 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 1.70 5.86 -2.39 -0.01 1.69 16 36 H 0.42 7.91 8.09 -92.71 -0.75 7.16 16 37 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.08 3.23 7.05 -2.39 -0.02 3.21 16 39 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.08 4.26 6.03 -2.39 -0.01 4.24 16 41 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 42 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 43 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 45 H 0.16 5.37 3.78 -78.85 -0.30 5.07 16 46 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.05 0.83 4.81 -2.38 -0.01 0.82 16 52 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 53 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 Total: -1.00 -63.05 398.09 2.52 -60.53 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -0.14 Total: 23.36 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 5.17 Total: 0.29 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -4.44 Total: -92.91 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -0.09 Total: -37.20 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -63.05 2.52 -60.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329063364.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.909 kcal (2) G-P(sol) polarization free energy of solvation -63.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds