Wall clock time and date at job start Tue Mar 31 2020 20:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.36366 * 2 1 4 4 C 1.50881 * 109.36871 * 240.25600 * 2 1 3 5 5 C 1.52569 * 109.36000 * 147.91912 * 4 2 1 6 6 C 1.47091 * 114.32404 * 85.01273 * 5 4 2 7 7 C 1.54866 * 110.32496 * 297.20119 * 6 5 4 8 8 H 1.09007 * 109.44860 * 311.22582 * 7 6 5 9 9 C 1.53000 * 109.43143 * 191.29380 * 7 6 5 10 10 N 1.44577 * 109.59935 * 71.26187 * 7 6 5 11 11 C 1.34783 * 118.63768 * 89.25530 * 10 7 6 12 12 O 1.21349 * 120.00340 * 356.48402 * 11 10 7 13 13 C 1.49456 * 119.99686 * 176.48972 * 11 10 7 14 14 O 1.21354 * 120.00128 * 351.13099 * 13 11 10 15 15 N 1.34773 * 119.99865 * 171.14100 * 13 11 10 16 16 C 1.46921 * 120.63041 * 356.35219 * 15 13 11 17 17 C 1.53189 * 108.77728 * 126.67170 * 16 15 13 18 18 C 1.53047 * 109.31537 * 54.63257 * 17 16 15 19 19 C 1.53039 * 109.53650 * 298.63789 * 18 17 16 20 20 H 1.08996 * 109.49773 * 301.41478 * 19 18 17 21 21 C 1.50703 * 109.52636 * 181.32739 * 19 18 17 22 22 H 1.07999 * 119.99743 * 0.14964 * 21 19 18 23 23 C 1.37868 * 119.99979 * 180.14503 * 21 19 18 24 24 N 1.31520 * 119.99879 * 180.02562 * 23 21 19 25 25 Si 1.86798 * 120.00636 * 0.02562 * 23 21 19 26 26 H 1.48501 * 109.46954 * 89.99560 * 25 23 21 27 27 H 1.48494 * 109.47486 * 209.99902 * 25 23 21 28 28 H 1.48503 * 109.46885 * 330.00321 * 25 23 21 29 29 C 1.46934 * 120.62946 * 176.63638 * 15 13 11 30 30 C 1.47596 * 122.71810 * 269.53165 * 10 7 6 31 31 H 1.09003 * 109.47374 * 179.74198 * 1 2 3 32 32 H 1.08995 * 109.47731 * 299.74335 * 1 2 3 33 33 H 1.08999 * 109.47294 * 59.74609 * 1 2 3 34 34 H 1.09004 * 109.49107 * 27.95927 * 4 2 1 35 35 H 1.08995 * 109.51217 * 267.89920 * 4 2 1 36 36 H 1.09001 * 108.51221 * 323.76502 * 5 4 2 37 37 H 1.08994 * 108.51794 * 206.26799 * 5 4 2 38 38 H 1.09003 * 109.33142 * 176.93889 * 6 5 4 39 39 H 1.09002 * 109.33026 * 57.46067 * 6 5 4 40 40 H 1.08995 * 109.46744 * 326.73462 * 9 7 6 41 41 H 1.09001 * 109.47210 * 86.73139 * 9 7 6 42 42 H 1.09000 * 109.46965 * 206.73430 * 9 7 6 43 43 H 1.09003 * 109.58579 * 246.45962 * 16 15 13 44 44 H 1.08995 * 109.59077 * 6.88328 * 16 15 13 45 45 H 1.09001 * 109.49810 * 294.68420 * 17 16 15 46 46 H 1.08998 * 109.53022 * 174.60298 * 17 16 15 47 47 H 1.08992 * 109.46192 * 178.61893 * 18 17 16 48 48 H 1.08998 * 109.44395 * 58.64947 * 18 17 16 49 49 H 0.97001 * 120.00173 * 180.02562 * 24 23 21 50 50 H 1.09000 * 109.58415 * 353.11784 * 29 15 13 51 51 H 1.08996 * 109.58467 * 113.39832 * 29 15 13 52 52 H 1.08998 * 108.95048 * 162.55760 * 30 10 7 53 53 H 1.08996 * 108.95404 * 281.19141 * 30 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8914 1.0284 0.0000 4 6 2.0303 -0.7062 -1.2359 5 6 3.3487 -0.0785 -1.6783 6 6 4.5357 -0.6202 -0.9991 7 6 4.4645 -0.3313 0.5207 8 1 4.2223 0.7196 0.6795 9 6 5.8176 -0.6448 1.1623 10 7 3.4427 -1.1573 1.1240 11 6 3.7847 -2.3793 1.5783 12 8 4.9150 -2.7913 1.4194 13 6 2.7717 -3.2270 2.2775 14 8 1.6935 -2.7592 2.5796 15 7 3.0558 -4.5110 2.5727 16 6 4.3246 -5.1147 2.1435 17 6 5.0176 -5.7266 3.3650 18 6 4.0598 -6.7006 4.0553 19 6 2.8177 -5.9449 4.5328 20 1 3.1157 -5.1508 5.2174 21 6 1.8896 -6.8978 5.2411 22 1 2.1595 -7.9386 5.3433 23 6 0.6962 -6.4410 5.7587 24 7 -0.1134 -7.2726 6.3774 25 14 0.2291 -4.6411 5.5815 26 1 -0.5303 -4.4487 4.3200 27 1 -0.6136 -4.2326 6.7339 28 1 1.4602 -3.8111 5.5497 29 6 2.0997 -5.3355 3.3245 30 6 2.0393 -0.7200 1.2576 31 1 -0.3634 -1.0277 -0.0046 32 1 -0.3634 0.5098 0.8922 33 1 -0.3634 0.5178 -0.8877 34 1 1.2947 -0.6075 -2.0342 35 1 2.1866 -1.7618 -1.0139 36 1 3.3017 0.9941 -1.4900 37 1 3.4630 -0.2333 -2.7511 38 1 5.4312 -0.1565 -1.4129 39 1 4.5832 -1.6972 -1.1598 40 1 6.2819 -1.4816 0.6405 41 1 6.4640 0.2302 1.0931 42 1 5.6710 -0.9063 2.2102 43 1 4.1279 -5.8935 1.4067 44 1 4.9645 -4.3483 1.7062 45 1 5.2949 -4.9347 4.0607 46 1 5.9126 -6.2609 3.0465 47 1 4.5590 -7.1558 4.9106 48 1 3.7635 -7.4783 3.3514 49 1 -0.9532 -6.9513 6.7412 50 1 1.2716 -4.7146 3.6663 51 1 1.7197 -6.1307 2.6832 52 1 1.4130 -1.5924 1.4438 53 1 1.9593 -0.0412 2.1066 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329675599.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:32 Heat of formation + Delta-G solvation = -55.762272 kcal Electronic energy + Delta-G solvation = -32250.798904 eV Core-core repulsion = 28315.874663 eV Total energy + Delta-G solvation = -3934.924241 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.58826 -40.65466 -39.14422 -38.64890 -35.79856 -35.27102 -34.75333 -33.62982 -32.28797 -31.22669 -27.99242 -27.44569 -27.17127 -26.65917 -25.13081 -23.63639 -23.38115 -22.09226 -21.19692 -20.84188 -19.96051 -18.95002 -18.37568 -17.77943 -17.44970 -17.11850 -16.60808 -16.37140 -16.05478 -15.75338 -15.73073 -15.30873 -15.20676 -15.00473 -14.95085 -14.67492 -14.29599 -14.01455 -13.78386 -13.69545 -13.58459 -13.38028 -13.19334 -13.12971 -13.02484 -12.81885 -12.63595 -12.52698 -12.36796 -12.14898 -11.88615 -11.81768 -11.64585 -11.62929 -11.48368 -11.37272 -11.20767 -11.11849 -10.95363 -10.80987 -9.90691 -9.71903 -9.60607 -8.40630 -6.43628 0.25648 1.21876 1.22313 1.29027 1.37049 2.00695 2.19056 2.29796 2.94685 3.01758 3.59259 3.76848 3.85535 3.93013 3.99272 4.08358 4.10741 4.14981 4.22018 4.34415 4.37197 4.46816 4.52651 4.53385 4.61387 4.65910 4.70862 4.75277 4.77775 4.80910 4.86565 4.89506 4.97316 5.02124 5.08839 5.12084 5.14312 5.17396 5.23291 5.24568 5.29437 5.34470 5.36721 5.39886 5.45366 5.49734 5.56847 5.60331 5.73346 5.94775 6.22981 6.23504 6.62264 6.68446 6.87964 7.21854 8.75420 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014665 B = 0.004207 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.812969 B = 6653.532995 C = 7976.648679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.090 0.910 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.121 4.121 7 C 0.134 3.866 8 H 0.105 0.895 9 C -0.143 4.143 10 N -0.557 5.557 11 C 0.511 3.489 12 O -0.506 6.506 13 C 0.482 3.518 14 O -0.549 6.549 15 N -0.573 5.573 16 C 0.047 3.953 17 C -0.121 4.121 18 C -0.099 4.099 19 C 0.006 3.994 20 H 0.014 0.986 21 C -0.514 4.514 22 H 0.050 0.950 23 C 0.028 3.972 24 N -0.936 5.936 25 Si 0.936 3.064 26 H -0.272 1.272 27 H -0.291 1.291 28 H -0.268 1.268 29 C 0.105 3.895 30 C 0.068 3.932 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.036 0.964 43 H 0.073 0.927 44 H 0.163 0.837 45 H 0.052 0.948 46 H 0.102 0.898 47 H 0.057 0.943 48 H 0.059 0.941 49 H 0.268 0.732 50 H 0.057 0.943 51 H 0.071 0.929 52 H 0.115 0.885 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.264 18.825 -18.967 28.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.108 0.892 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.159 4.159 7 C 0.032 3.968 8 H 0.123 0.877 9 C -0.200 4.200 10 N -0.288 5.288 11 C 0.294 3.706 12 O -0.385 6.385 13 C 0.266 3.734 14 O -0.430 6.430 15 N -0.303 5.303 16 C -0.072 4.072 17 C -0.159 4.159 18 C -0.137 4.137 19 C -0.013 4.013 20 H 0.033 0.967 21 C -0.552 4.552 22 H 0.069 0.931 23 C -0.171 4.171 24 N -0.576 5.576 25 Si 0.765 3.235 26 H -0.199 1.199 27 H -0.218 1.218 28 H -0.193 1.193 29 C -0.017 4.017 30 C -0.053 4.053 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.179 0.821 45 H 0.071 0.929 46 H 0.120 0.880 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.075 0.925 51 H 0.089 0.911 52 H 0.132 0.868 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.143 18.864 -18.814 28.508 hybrid contribution -1.097 0.055 0.803 1.360 sum 9.046 18.919 -18.012 27.644 Atomic orbital electron populations 1.21821 0.93886 1.01653 1.02742 1.21270 0.96458 1.00082 0.93434 0.89151 1.21185 0.97850 0.98852 0.97173 1.20453 0.93337 1.01039 1.00582 1.21234 0.99827 1.01377 0.93503 1.21572 0.87119 0.94825 0.93247 0.87668 1.22121 0.95490 1.02405 1.00009 1.47879 1.11148 1.13891 1.55915 1.19825 0.87403 0.83178 0.80145 1.90276 1.20846 1.69329 1.58074 1.20755 0.87831 0.83350 0.81427 1.90497 1.25913 1.72063 1.54545 1.48429 1.20529 1.09848 1.51539 1.23477 0.84260 1.01978 0.97511 1.21852 0.98682 0.98572 0.96763 1.21420 0.94853 0.97703 0.99732 1.19401 0.94804 0.95116 0.92018 0.96740 1.21267 1.03031 0.96219 1.34707 0.93143 1.25654 0.96510 1.00427 0.94460 1.69990 1.11883 1.36634 1.39097 0.86075 0.78659 0.81828 0.76980 1.19850 1.21808 1.19344 1.22338 0.91883 0.93162 0.94327 1.23179 0.80344 1.03260 0.98467 0.93923 0.92451 0.90420 0.90569 0.94403 0.90549 0.91241 0.88547 0.93337 0.91021 0.90573 0.94532 0.90862 0.82104 0.92889 0.87999 0.92449 0.92229 0.92243 0.92535 0.91111 0.86829 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.87 71.98 0.64 -1.76 16 2 C -0.09 -1.57 2.54 -11.28 -0.03 -1.60 16 3 H 0.09 1.18 7.32 -2.38 -0.02 1.16 16 4 C -0.11 -1.83 5.02 29.76 0.15 -1.68 16 5 C -0.12 -1.45 5.15 28.61 0.15 -1.30 16 6 C -0.12 -1.75 4.91 29.39 0.14 -1.60 16 7 C 0.13 2.33 2.56 45.99 0.12 2.45 16 8 H 0.11 1.43 8.07 -2.38 -0.02 1.41 16 9 C -0.14 -2.65 7.89 71.98 0.57 -2.08 16 10 N -0.56 -13.32 2.20 -796.28 -1.76 -15.07 16 11 C 0.51 15.24 6.97 87.27 0.61 15.85 16 12 O -0.51 -14.61 9.56 -3.24 -0.03 -14.64 16 13 C 0.48 17.94 7.56 87.27 0.66 18.60 16 14 O -0.55 -22.81 12.45 -3.26 -0.04 -22.85 16 15 N -0.57 -21.93 2.97 -820.48 -2.44 -24.37 16 16 C 0.05 1.46 6.28 86.36 0.54 2.00 16 17 C -0.12 -3.72 6.08 30.67 0.19 -3.54 16 18 C -0.10 -3.83 5.11 30.62 0.16 -3.68 16 19 C 0.01 0.30 1.84 -11.46 -0.02 0.27 16 20 H 0.01 0.74 7.21 -2.39 -0.02 0.72 16 21 C -0.51 -29.42 9.15 25.60 0.23 -29.19 16 22 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16 23 C 0.03 1.69 5.45 84.65 0.46 2.15 16 24 N -0.94 -58.76 13.96 21.45 0.30 -58.46 16 25 Si 0.94 48.85 24.32 68.60 1.67 50.52 16 26 H -0.27 -14.08 6.92 99.48 0.69 -13.39 16 27 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 28 H -0.27 -13.99 6.53 99.48 0.65 -13.34 16 29 C 0.10 4.76 5.10 86.36 0.44 5.20 16 30 C 0.07 1.63 4.83 86.37 0.42 2.05 16 31 H 0.04 0.86 8.13 -2.39 -0.02 0.84 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 34 H 0.08 1.07 7.74 -2.38 -0.02 1.05 16 35 H 0.04 0.82 7.48 -2.39 -0.02 0.80 16 36 H 0.08 0.73 7.36 -2.39 -0.02 0.71 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.10 1.01 8.11 -2.39 -0.02 0.99 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 1.47 6.61 -2.39 -0.02 1.46 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.04 0.86 6.99 -2.39 -0.02 0.84 16 43 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.16 4.71 3.74 -81.30 -0.30 4.41 16 45 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 49 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 50 H 0.06 2.83 2.34 -2.39 -0.01 2.82 16 51 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 52 H 0.11 3.51 4.20 -55.82 -0.23 3.28 16 53 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -68.59 380.55 3.42 -65.17 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.29 Total: 17.56 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 5.42 Total: 2.15 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -3.89 Total: -97.91 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -0.07 Total: -37.49 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 1.67 Total: 50.52 kcal Total: -68.59 3.42 -65.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329675599.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.406 kcal (2) G-P(sol) polarization free energy of solvation -68.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds