Wall clock time and date at job start Tue Mar 31 2020 19:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47466 * 2 1 4 4 C 1.52993 * 109.47460 * 239.99405 * 2 1 3 5 5 C 1.53007 * 109.47560 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.46777 * 60.00016 * 5 4 2 7 7 C 1.53001 * 109.47307 * 300.00311 * 6 5 4 8 8 C 1.52993 * 109.47056 * 60.00002 * 7 6 5 9 9 H 1.08998 * 109.47424 * 59.99852 * 8 7 6 10 10 C 1.53001 * 109.47056 * 179.97438 * 8 7 6 11 11 N 1.46498 * 109.47411 * 295.00011 * 10 8 7 12 12 C 1.34767 * 120.00374 * 179.97438 * 11 10 8 13 13 O 1.21348 * 119.99911 * 0.02562 * 12 11 10 14 14 C 1.49446 * 120.00049 * 180.27806 * 12 11 10 15 15 O 1.21344 * 119.99968 * 352.78961 * 14 12 11 16 16 N 1.34783 * 119.99896 * 172.79835 * 14 12 11 17 17 C 1.46928 * 120.63096 * 1.66541 * 16 14 12 18 18 C 1.52760 * 109.00972 * 233.58892 * 17 16 14 19 19 C 1.53047 * 109.38164 * 305.58824 * 18 17 16 20 20 C 1.53045 * 109.53655 * 61.24185 * 19 18 17 21 21 H 1.09003 * 109.49745 * 58.58321 * 20 19 18 22 22 C 1.50693 * 109.49524 * 178.68043 * 20 19 18 23 23 H 1.07998 * 120.00195 * 359.83746 * 22 20 19 24 24 C 1.37881 * 119.99918 * 179.83656 * 22 20 19 25 25 N 1.31515 * 120.00143 * 0.02562 * 24 22 20 26 26 Si 1.86805 * 120.00164 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46738 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46935 * 120.00006 * 26 24 22 29 29 H 1.48495 * 109.47148 * 240.00279 * 26 24 22 30 30 C 1.46924 * 120.62998 * 181.95330 * 16 14 12 31 31 H 1.08992 * 109.47475 * 300.00401 * 1 2 3 32 32 H 1.09004 * 109.47011 * 60.00609 * 1 2 3 33 33 H 1.09005 * 109.47084 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47067 * 60.00543 * 4 2 1 35 35 H 1.08998 * 109.47666 * 300.00053 * 4 2 1 36 36 H 1.09005 * 109.46925 * 300.00617 * 5 4 2 37 37 H 1.08992 * 109.47575 * 180.02562 * 5 4 2 38 38 H 1.09000 * 109.46784 * 180.02562 * 6 5 4 39 39 H 1.08998 * 109.46759 * 60.00207 * 6 5 4 40 40 H 1.09006 * 109.46924 * 300.00292 * 7 6 5 41 41 H 1.08996 * 109.47005 * 180.02562 * 7 6 5 42 42 H 1.09003 * 109.47286 * 174.99615 * 10 8 7 43 43 H 1.08998 * 109.46928 * 55.00316 * 10 8 7 44 44 H 0.96999 * 119.99283 * 0.02562 * 11 10 8 45 45 H 1.09001 * 109.58400 * 353.42249 * 17 16 14 46 46 H 1.09006 * 109.58397 * 113.85006 * 17 16 14 47 47 H 1.08995 * 109.56227 * 185.55466 * 18 17 16 48 48 H 1.09000 * 109.38534 * 65.51233 * 18 17 16 49 49 H 1.08993 * 109.45923 * 301.22010 * 19 18 17 50 50 H 1.09000 * 109.44643 * 181.25037 * 19 18 17 51 51 H 0.96996 * 120.00262 * 180.02562 * 25 24 22 52 52 H 1.08997 * 109.58628 * 246.15208 * 30 16 14 53 53 H 1.09004 * 109.58700 * 6.42999 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5701 -0.7219 -1.2488 6 6 4.0795 -1.4434 0.0006 7 6 3.5694 -0.7221 1.2498 8 6 2.0395 -0.7216 1.2494 9 1 1.6757 -1.7491 1.2491 10 6 1.5294 -0.0008 2.4989 11 7 1.9164 -0.7581 3.6917 12 6 1.5731 -0.3098 4.9154 13 8 0.9431 0.7211 5.0291 14 6 1.9733 -1.0791 6.1325 15 8 2.4910 -2.1705 6.0174 16 7 1.7589 -0.5608 7.3581 17 6 1.0999 0.7430 7.5147 18 6 1.9806 1.6452 8.3772 19 6 2.2947 0.9368 9.6970 20 6 3.0588 -0.3586 9.4132 21 1 3.9776 -0.1283 8.8739 22 6 3.3960 -1.0390 10.7149 23 1 3.0978 -0.5912 11.6514 24 6 4.0851 -2.2332 10.7102 25 7 4.4486 -2.7782 9.5699 26 14 4.5025 -3.0771 12.3237 27 1 3.9850 -2.2659 13.4548 28 1 3.8772 -4.4237 12.3541 29 1 5.9763 -3.2127 12.4446 30 6 2.1854 -1.2860 8.5626 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6768 -0.2075 -2.1392 35 1 1.6767 -1.7490 -1.2491 36 1 3.9338 0.3057 -1.2486 37 1 3.9334 -1.2354 -2.1389 38 1 5.1695 -1.4434 0.0010 39 1 3.7157 -2.4709 0.0004 40 1 3.9331 0.3055 1.2499 41 1 3.9327 -1.2359 2.1397 42 1 0.4431 0.0779 2.4550 43 1 1.9644 0.9975 2.5454 44 1 2.4203 -1.5820 3.6007 45 1 0.9584 1.2008 6.5356 46 1 0.1334 0.6080 8.0004 47 1 1.4569 2.5791 8.5813 48 1 2.9096 1.8571 7.8479 49 1 1.3642 0.7036 10.2144 50 1 2.9047 1.5886 10.3225 51 1 4.9331 -3.6185 9.5665 52 1 1.3093 -1.5899 9.1355 53 1 2.7576 -2.1680 8.2748 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330393291.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:29 Heat of formation + Delta-G solvation = -108.027985 kcal Electronic energy + Delta-G solvation = -30248.198982 eV Core-core repulsion = 26311.008330 eV Total energy + Delta-G solvation = -3937.190652 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.99096 -40.39029 -39.47943 -38.53588 -36.20120 -35.13575 -33.64992 -33.45674 -32.07016 -31.59354 -28.41092 -27.41265 -26.86076 -26.18363 -24.08506 -23.50611 -22.50866 -21.99556 -21.57713 -20.75178 -20.31032 -18.85513 -18.21163 -17.89321 -17.12759 -16.88996 -16.46332 -16.26485 -15.86192 -15.66828 -15.48688 -15.32551 -14.99517 -14.85041 -14.79754 -14.61983 -14.44066 -14.16516 -13.90765 -13.56240 -13.46434 -13.06860 -13.02709 -12.90907 -12.81197 -12.68635 -12.45933 -12.37060 -12.30822 -12.15514 -11.93591 -11.73701 -11.72201 -11.60403 -11.31414 -11.15749 -10.99598 -10.93996 -10.88951 -10.55997 -10.29232 -9.96485 -9.55764 -8.12595 -6.29126 0.36494 1.34705 1.41632 1.42291 1.53877 2.16177 2.40848 2.58943 3.15599 3.31034 3.59798 3.72484 3.78191 4.12053 4.14948 4.19097 4.25012 4.31702 4.33893 4.44916 4.51991 4.58060 4.59190 4.61903 4.68758 4.71202 4.75944 4.81497 4.84924 4.89477 4.96940 5.05325 5.08194 5.12600 5.15553 5.22515 5.22801 5.25458 5.29559 5.33995 5.37616 5.40524 5.45617 5.48366 5.55133 5.56963 5.64445 5.83396 5.93215 6.00061 6.29340 6.44493 6.74540 6.83344 6.99047 7.40707 8.91512 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018113 B = 0.002489 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.443425 B =11248.054107 C =12275.607795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.078 4.078 3 H 0.076 0.924 4 C -0.110 4.110 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.120 4.120 8 C -0.087 4.087 9 H 0.081 0.919 10 C 0.117 3.883 11 N -0.685 5.685 12 C 0.520 3.480 13 O -0.520 6.520 14 C 0.483 3.517 15 O -0.560 6.560 16 N -0.573 5.573 17 C 0.048 3.952 18 C -0.124 4.124 19 C -0.107 4.107 20 C 0.039 3.961 21 H -0.010 1.010 22 C -0.535 4.535 23 H 0.062 0.938 24 C 0.011 3.989 25 N -0.914 5.914 26 Si 0.959 3.041 27 H -0.262 1.262 28 H -0.281 1.281 29 H -0.282 1.282 30 C 0.120 3.880 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.415 0.585 45 H 0.158 0.842 46 H 0.070 0.930 47 H 0.099 0.901 48 H 0.047 0.953 49 H 0.056 0.944 50 H 0.054 0.946 51 H 0.261 0.739 52 H 0.043 0.957 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.894 7.007 -22.679 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.097 4.097 3 H 0.094 0.906 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.157 4.157 8 C -0.106 4.106 9 H 0.099 0.901 10 C -0.005 4.005 11 N -0.337 5.337 12 C 0.302 3.698 13 O -0.399 6.399 14 C 0.266 3.734 15 O -0.440 6.440 16 N -0.304 5.304 17 C -0.072 4.072 18 C -0.162 4.162 19 C -0.145 4.145 20 C 0.020 3.980 21 H 0.008 0.992 22 C -0.573 4.573 23 H 0.081 0.919 24 C -0.189 4.189 25 N -0.553 5.553 26 Si 0.785 3.215 27 H -0.186 1.186 28 H -0.207 1.207 29 H -0.208 1.208 30 C -0.002 4.002 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.252 0.748 45 H 0.174 0.826 46 H 0.089 0.911 47 H 0.118 0.882 48 H 0.066 0.934 49 H 0.075 0.925 50 H 0.072 0.928 51 H 0.070 0.930 52 H 0.061 0.939 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.991 7.021 -22.742 24.807 hybrid contribution 0.875 -1.285 1.226 1.980 sum -6.115 5.737 -21.516 23.092 Atomic orbital electron populations 1.21940 0.94710 1.02156 1.02252 1.21045 0.95778 0.99630 0.93220 0.90609 1.21569 0.95269 1.00758 0.97186 1.21542 0.95816 1.00781 0.97493 1.21522 1.00372 0.99416 0.94347 1.21639 0.94587 1.01280 0.98242 1.21414 0.95800 1.00307 0.93031 0.90104 1.21859 1.01094 0.95377 0.82125 1.45873 1.55154 1.27979 1.04654 1.19906 0.80207 0.84826 0.84890 1.90246 1.40859 1.24370 1.84426 1.20521 0.80783 0.86535 0.85562 1.90732 1.44498 1.22123 1.86627 1.48489 1.55283 1.21375 1.05295 1.23302 0.95001 0.82057 1.06820 1.21812 0.99637 0.98961 0.95741 1.21563 0.99629 0.96479 0.96804 1.18906 0.92659 0.92426 0.94035 0.99221 1.21509 1.36081 1.06713 0.92993 0.91945 1.25889 0.95364 0.98079 0.99552 1.70060 1.39312 1.19124 1.26789 0.85482 0.77737 0.78300 0.80005 1.18634 1.20721 1.20763 1.21953 0.97185 0.97712 0.83328 0.92548 0.91670 0.92589 0.90914 0.91928 0.91909 0.91430 0.91997 0.91970 0.91653 0.92914 0.89949 0.90830 0.74756 0.82588 0.91149 0.88246 0.93442 0.92498 0.92766 0.92959 0.93879 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.85 71.98 0.64 -1.03 16 2 C -0.08 -0.89 2.25 -10.79 -0.02 -0.91 16 3 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.11 -1.12 5.20 30.59 0.16 -0.96 16 5 C -0.12 -1.30 5.92 30.60 0.18 -1.12 16 6 C -0.12 -1.60 5.92 30.60 0.18 -1.41 16 7 C -0.12 -1.86 5.08 30.59 0.16 -1.70 16 8 C -0.09 -1.24 1.75 -10.79 -0.02 -1.26 16 9 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 10 C 0.12 2.17 4.85 86.38 0.42 2.59 16 11 N -0.68 -17.23 5.27 -464.43 -2.45 -19.68 16 12 C 0.52 16.95 7.80 87.27 0.68 17.63 16 13 O -0.52 -16.92 13.02 -3.24 -0.04 -16.96 16 14 C 0.48 20.15 7.76 87.27 0.68 20.83 16 15 O -0.56 -26.84 15.91 -3.23 -0.05 -26.89 16 16 N -0.57 -24.63 2.98 -821.31 -2.45 -27.08 16 17 C 0.05 1.69 6.20 86.22 0.53 2.22 16 18 C -0.12 -4.21 6.07 30.53 0.19 -4.03 16 19 C -0.11 -4.39 5.11 30.63 0.16 -4.23 16 20 C 0.04 2.01 2.25 -11.46 -0.03 1.98 16 21 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 22 C -0.53 -29.65 8.56 25.60 0.22 -29.43 16 23 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 24 C 0.01 0.60 5.30 84.66 0.45 1.05 16 25 N -0.91 -54.86 11.39 21.45 0.24 -54.61 16 26 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 27 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 28 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 29 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 30 C 0.12 6.10 5.40 86.36 0.47 6.57 16 31 H 0.06 0.67 6.32 -2.39 -0.02 0.66 16 32 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.05 0.97 7.18 -2.39 -0.02 0.95 16 42 H 0.08 1.49 6.17 -2.39 -0.01 1.48 16 43 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.42 10.31 7.15 -92.71 -0.66 9.65 16 45 H 0.16 5.20 3.79 -82.27 -0.31 4.89 16 46 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 47 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 48 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 49 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 50 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 52 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 53 H 0.09 5.05 5.14 -2.38 -0.01 5.04 16 Total: -1.00 -67.00 400.21 2.24 -64.76 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: -0.07 Total: 27.48 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 5.03 Total: 6.78 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -4.65 Total: -101.37 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -0.09 Total: -43.85 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -67.00 2.24 -64.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330393291.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.269 kcal (2) G-P(sol) polarization free energy of solvation -66.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds