Wall clock time and date at job start Tue Mar 31 2020 19:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47297 * 2 1 4 4 C 1.53003 * 109.46854 * 240.01023 * 2 1 3 5 5 C 1.52999 * 109.46898 * 299.99757 * 4 2 1 6 6 C 1.52997 * 109.47098 * 299.99992 * 5 4 2 7 7 C 1.53003 * 109.47240 * 60.00217 * 6 5 4 8 8 C 1.52997 * 109.47472 * 120.00829 * 2 1 3 9 9 H 1.08996 * 109.46855 * 179.97438 * 8 2 1 10 10 C 1.52999 * 109.46818 * 299.99660 * 8 2 1 11 11 N 1.46505 * 109.46605 * 184.99645 * 10 8 2 12 12 C 1.34776 * 119.99544 * 179.97438 * 11 10 8 13 13 O 1.21348 * 120.00211 * 0.02562 * 12 11 10 14 14 C 1.49458 * 119.99882 * 180.02562 * 12 11 10 15 15 O 1.21343 * 119.99775 * 353.60437 * 14 12 11 16 16 N 1.34772 * 120.00050 * 173.59845 * 14 12 11 17 17 C 1.46934 * 120.63033 * 352.94057 * 16 14 12 18 18 C 1.53191 * 108.76297 * 126.35719 * 17 16 14 19 19 C 1.53041 * 109.31478 * 54.65875 * 18 17 16 20 20 C 1.53048 * 109.52508 * 298.61359 * 19 18 17 21 21 H 1.09005 * 109.49094 * 301.41745 * 20 19 18 22 22 C 1.50694 * 109.50026 * 181.35780 * 20 19 18 23 23 H 1.08004 * 120.00093 * 359.97438 * 22 20 19 24 24 C 1.37878 * 120.00311 * 179.97438 * 22 20 19 25 25 N 1.31516 * 119.99510 * 359.97438 * 24 22 20 26 26 Si 1.86793 * 120.00287 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46984 * 89.99979 * 26 24 22 28 28 H 1.48493 * 109.47398 * 210.00032 * 26 24 22 29 29 H 1.48508 * 109.47153 * 330.00406 * 26 24 22 30 30 C 1.46925 * 120.63256 * 172.91086 * 16 14 12 31 31 H 1.09005 * 109.46675 * 299.99090 * 1 2 3 32 32 H 1.08997 * 109.47446 * 59.99113 * 1 2 3 33 33 H 1.08999 * 109.46988 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47576 * 59.99378 * 4 2 1 35 35 H 1.08996 * 109.47522 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.47457 * 60.00044 * 5 4 2 37 37 H 1.09005 * 109.47080 * 179.97438 * 5 4 2 38 38 H 1.08999 * 109.47111 * 180.02562 * 6 5 4 39 39 H 1.09004 * 109.47389 * 300.00100 * 6 5 4 40 40 H 1.08997 * 109.47206 * 179.97438 * 7 6 5 41 41 H 1.08999 * 109.47030 * 60.00123 * 7 6 5 42 42 H 1.09002 * 109.46990 * 65.00679 * 10 8 2 43 43 H 1.08988 * 109.47487 * 305.00012 * 10 8 2 44 44 H 0.96994 * 120.00185 * 0.02562 * 11 10 8 45 45 H 1.09001 * 109.58268 * 246.15100 * 17 16 14 46 46 H 1.08993 * 109.58554 * 6.57914 * 17 16 14 47 47 H 1.08997 * 109.51406 * 294.69495 * 18 17 16 48 48 H 1.08998 * 109.48473 * 174.59715 * 18 17 16 49 49 H 1.08994 * 109.46159 * 178.59922 * 19 18 17 50 50 H 1.08999 * 109.46267 * 58.62328 * 19 18 17 51 51 H 0.97002 * 119.99585 * 179.97438 * 25 24 22 52 52 H 1.09004 * 109.58308 * 113.84333 * 30 16 14 53 53 H 1.09002 * 109.70174 * 353.49772 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5300 -2.1635 -1.2496 6 6 2.0400 -2.8849 -0.0005 7 6 1.5301 -2.1639 1.2489 8 6 2.0401 -0.7214 1.2491 9 1 3.1301 -0.7217 1.2488 10 6 1.5302 -0.0003 2.4984 11 7 2.1144 -0.6181 3.6914 12 6 1.8064 -0.1444 4.9150 13 8 1.0448 0.7935 5.0286 14 6 2.4028 -0.7743 6.1321 15 8 3.0706 -1.7821 6.0283 16 7 2.1989 -0.2230 7.3449 17 6 1.5257 1.0768 7.4727 18 6 0.3497 0.9292 8.4433 19 6 0.8552 0.3507 9.7669 20 6 1.4565 -1.0354 9.5228 21 1 0.7014 -1.6871 9.0832 22 6 1.9239 -1.6185 10.8314 23 1 1.8047 -1.0568 11.7462 24 6 2.5038 -2.8690 10.8610 25 7 2.6485 -3.5532 9.7472 26 14 3.0838 -3.5915 12.4830 27 1 1.9776 -4.3625 13.1051 28 1 4.2388 -4.4922 12.2389 29 1 3.4959 -2.4939 13.3946 30 6 2.6449 -0.9105 8.5643 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6766 -0.2072 -2.1393 35 1 3.1299 -0.7207 -1.2498 36 1 0.4400 -2.1636 -1.2495 37 1 1.8929 -2.6771 -2.1399 38 1 1.6771 -3.9127 -0.0008 39 1 3.1301 -2.8850 -0.0005 40 1 1.8931 -2.6781 2.1388 41 1 0.4401 -2.1639 1.2490 42 1 0.4439 -0.0773 2.5444 43 1 1.8185 1.0499 2.4549 44 1 2.7234 -1.3676 3.6006 45 1 2.2280 1.8155 7.8589 46 1 1.1569 1.3947 6.4976 47 1 -0.3948 0.2588 8.0140 48 1 -0.0996 1.9062 8.6214 49 1 0.0247 0.2680 10.4678 50 1 1.6176 1.0090 10.1833 51 1 3.0568 -4.4328 9.7680 52 1 3.4385 -0.3337 9.0394 53 1 3.0163 -1.9036 8.3114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330393294.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:40 Heat of formation + Delta-G solvation = -105.055489 kcal Electronic energy + Delta-G solvation = -30320.162175 eV Core-core repulsion = 26383.100421 eV Total energy + Delta-G solvation = -3937.061755 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.99096 -40.56128 -39.55551 -38.53558 -36.22951 -35.13677 -33.47363 -33.03182 -32.03668 -31.57598 -28.52798 -27.58255 -26.91747 -26.21835 -24.07380 -23.51190 -23.06492 -22.14476 -21.66128 -20.48941 -19.34794 -18.83222 -18.19327 -17.91390 -17.07409 -16.92525 -16.64248 -16.49282 -16.06636 -15.75660 -15.45323 -15.30062 -14.98594 -14.85385 -14.68227 -14.54779 -14.45615 -13.95026 -13.79035 -13.60705 -13.56627 -13.42901 -13.02931 -12.88795 -12.82163 -12.49376 -12.41266 -12.35503 -12.29919 -12.16833 -11.93569 -11.77742 -11.72065 -11.62595 -11.18043 -11.08681 -10.99789 -10.93719 -10.82439 -10.55249 -10.30675 -9.98422 -9.55043 -8.12952 -6.29361 0.35428 1.35819 1.41991 1.43128 1.52857 2.15600 2.40849 2.59172 3.15444 3.31960 3.60990 3.73231 3.79747 4.15403 4.18755 4.19543 4.28995 4.30182 4.34296 4.45954 4.48414 4.52156 4.57537 4.65742 4.70724 4.74027 4.76619 4.81356 4.82586 4.89214 5.00276 5.05170 5.08522 5.13752 5.16210 5.21314 5.23407 5.26368 5.30125 5.30960 5.38302 5.42629 5.47028 5.50852 5.54898 5.57178 5.68962 5.83402 5.92966 6.00502 6.29137 6.44679 6.74419 6.83107 6.98609 7.40446 8.91255 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018945 B = 0.002477 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.602339 B =11303.541170 C =12394.587982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.078 4.078 3 H 0.080 0.920 4 C -0.111 4.111 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.122 4.122 8 C -0.087 4.087 9 H 0.083 0.917 10 C 0.119 3.881 11 N -0.685 5.685 12 C 0.520 3.480 13 O -0.520 6.520 14 C 0.484 3.516 15 O -0.560 6.560 16 N -0.575 5.575 17 C 0.049 3.951 18 C -0.120 4.120 19 C -0.107 4.107 20 C 0.039 3.961 21 H -0.012 1.012 22 C -0.535 4.535 23 H 0.063 0.937 24 C 0.010 3.990 25 N -0.915 5.915 26 Si 0.960 3.040 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.263 1.263 30 C 0.121 3.879 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.415 0.585 45 H 0.071 0.929 46 H 0.156 0.844 47 H 0.045 0.955 48 H 0.098 0.902 49 H 0.053 0.947 50 H 0.057 0.943 51 H 0.261 0.739 52 H 0.044 0.956 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 8.718 -23.204 24.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.097 4.097 3 H 0.098 0.902 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.159 4.159 8 C -0.106 4.106 9 H 0.101 0.899 10 C -0.003 4.003 11 N -0.337 5.337 12 C 0.301 3.699 13 O -0.399 6.399 14 C 0.267 3.733 15 O -0.439 6.439 16 N -0.306 5.306 17 C -0.071 4.071 18 C -0.158 4.158 19 C -0.145 4.145 20 C 0.019 3.981 21 H 0.006 0.994 22 C -0.573 4.573 23 H 0.081 0.919 24 C -0.189 4.189 25 N -0.554 5.554 26 Si 0.785 3.215 27 H -0.201 1.201 28 H -0.211 1.211 29 H -0.187 1.187 30 C 0.000 4.000 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.253 0.747 45 H 0.089 0.911 46 H 0.172 0.828 47 H 0.064 0.936 48 H 0.116 0.884 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.070 0.930 52 H 0.062 0.938 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.557 8.700 -23.259 24.964 hybrid contribution 0.684 -1.344 1.247 1.957 sum -1.873 7.356 -22.012 23.284 Atomic orbital electron populations 1.22029 0.95060 1.02250 1.02000 1.21024 0.96154 0.99315 0.93224 0.90206 1.21539 1.00695 0.95400 0.97190 1.21576 1.01083 0.95745 0.97397 1.21507 1.00836 0.98858 0.94341 1.21673 1.01282 0.94807 0.98176 1.21389 1.01127 0.95051 0.92987 0.89853 1.21826 0.98688 0.97622 0.82164 1.45880 1.47378 1.35775 1.04621 1.19933 0.81812 0.83303 0.84875 1.90268 1.36622 1.28443 1.84607 1.20521 0.82144 0.85039 0.85590 1.90722 1.40344 1.26489 1.86368 1.48465 1.55098 1.21595 1.05423 1.23329 0.94764 0.82641 1.06376 1.21822 0.97151 1.01758 0.95099 1.21564 0.99670 0.96445 0.96776 1.18912 0.92487 0.92980 0.93683 0.99361 1.21483 1.40154 1.01834 0.93870 0.91895 1.25894 0.95818 0.97471 0.99716 1.70056 1.44391 1.12829 1.28108 0.85523 0.77777 0.78391 0.79792 1.20137 1.21137 1.18730 1.21937 0.97971 0.97322 0.82810 0.92877 0.91865 0.92155 0.90970 0.91782 0.91644 0.91607 0.92129 0.91922 0.93052 0.91499 0.90772 0.90222 0.74720 0.91093 0.82759 0.93600 0.88355 0.92790 0.92408 0.92952 0.93794 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 8.15 71.98 0.59 -1.21 16 2 C -0.08 -0.87 2.72 -10.79 -0.03 -0.90 16 3 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 4 C -0.11 -1.10 5.45 30.59 0.17 -0.93 16 5 C -0.12 -1.31 5.65 30.59 0.17 -1.14 16 6 C -0.12 -1.57 5.92 30.59 0.18 -1.39 16 7 C -0.12 -1.89 4.80 30.59 0.15 -1.75 16 8 C -0.09 -1.22 2.00 -10.80 -0.02 -1.24 16 9 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 10 C 0.12 2.19 4.56 86.38 0.39 2.59 16 11 N -0.68 -17.13 5.27 -464.41 -2.45 -19.57 16 12 C 0.52 16.99 7.78 87.27 0.68 17.67 16 13 O -0.52 -17.18 13.10 -3.24 -0.04 -17.22 16 14 C 0.48 20.20 7.74 87.27 0.68 20.88 16 15 O -0.56 -26.71 15.95 -3.23 -0.05 -26.76 16 16 N -0.57 -24.69 2.97 -820.48 -2.44 -27.12 16 17 C 0.05 1.71 6.27 86.36 0.54 2.25 16 18 C -0.12 -4.16 6.08 30.67 0.19 -3.97 16 19 C -0.11 -4.40 5.11 30.62 0.16 -4.24 16 20 C 0.04 2.00 2.24 -11.46 -0.03 1.97 16 21 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 22 C -0.54 -29.72 8.56 25.60 0.22 -29.50 16 23 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 24 C 0.01 0.59 5.30 84.65 0.45 1.04 16 25 N -0.92 -55.06 11.40 21.45 0.24 -54.82 16 26 Si 0.96 44.19 29.54 68.60 2.03 46.21 16 27 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 28 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 29 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 30 C 0.12 6.17 5.38 86.36 0.46 6.64 16 31 H 0.05 0.68 6.54 -2.38 -0.02 0.66 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.73 4.81 -2.39 -0.01 0.72 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 0.72 6.43 -2.39 -0.02 0.70 16 37 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.05 0.95 7.18 -2.39 -0.02 0.93 16 41 H 0.07 1.07 6.43 -2.39 -0.02 1.05 16 42 H 0.07 1.44 6.71 -2.39 -0.02 1.43 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.42 10.15 7.14 -92.71 -0.66 9.49 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.16 5.13 3.78 -78.84 -0.30 4.84 16 47 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 49 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 51 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 52 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 53 H 0.08 4.98 5.19 -2.39 -0.01 4.97 16 Total: -1.00 -67.35 393.82 2.18 -65.16 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: -0.05 Total: 27.33 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 4.94 Total: 6.79 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -4.64 Total: -101.52 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -0.09 Total: -43.98 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -67.35 2.18 -65.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330393294.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.893 kcal (2) G-P(sol) polarization free energy of solvation -67.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds