Wall clock time and date at job start Tue Mar 31 2020 20:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47073 * 2 1 4 4 C 1.52996 * 109.47246 * 239.99252 * 2 1 3 5 5 C 1.52994 * 109.47633 * 300.00471 * 4 2 1 6 6 C 1.53004 * 109.47061 * 300.00041 * 5 4 2 7 7 C 1.53001 * 109.46950 * 59.99865 * 6 5 4 8 8 H 1.08991 * 109.47541 * 60.00111 * 7 6 5 9 9 C 1.53001 * 109.46769 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.47066 * 299.99809 * 7 6 5 11 11 N 1.46501 * 109.47195 * 180.02562 * 10 7 6 12 12 C 1.34776 * 120.00213 * 155.00424 * 11 10 7 13 13 O 1.21348 * 119.99842 * 359.97438 * 12 11 10 14 14 C 1.49445 * 119.99936 * 180.02562 * 12 11 10 15 15 O 1.21349 * 120.00214 * 353.50159 * 14 12 11 16 16 N 1.34779 * 120.00153 * 173.50346 * 14 12 11 17 17 C 1.46927 * 120.62861 * 351.29699 * 16 14 12 18 18 C 1.53194 * 108.77358 * 233.58601 * 17 16 14 19 19 C 1.53041 * 109.31129 * 305.36269 * 18 17 16 20 20 C 1.53038 * 109.53879 * 61.36809 * 19 18 17 21 21 H 1.09003 * 109.49937 * 58.61143 * 20 19 18 22 22 C 1.50693 * 109.50018 * 178.68314 * 20 19 18 23 23 H 1.08001 * 119.99908 * 6.73620 * 22 20 19 24 24 C 1.37884 * 120.00340 * 186.74016 * 22 20 19 25 25 N 1.31514 * 120.00017 * 185.95516 * 24 22 20 26 26 Si 1.86797 * 119.99551 * 5.95762 * 24 22 20 27 27 H 1.48492 * 109.47361 * 269.99669 * 26 24 22 28 28 H 1.48504 * 109.46905 * 149.99867 * 26 24 22 29 29 H 1.48503 * 109.47412 * 30.00180 * 26 24 22 30 30 C 1.46923 * 120.63294 * 171.27003 * 16 14 12 31 31 H 1.08999 * 109.47103 * 300.00433 * 1 2 3 32 32 H 1.09005 * 109.46829 * 60.00038 * 1 2 3 33 33 H 1.08994 * 109.47330 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47417 * 180.02562 * 4 2 1 35 35 H 1.09005 * 109.46626 * 60.00586 * 4 2 1 36 36 H 1.08999 * 109.47447 * 179.97438 * 5 4 2 37 37 H 1.09004 * 109.47008 * 59.99836 * 5 4 2 38 38 H 1.08999 * 109.46624 * 299.99590 * 6 5 4 39 39 H 1.08994 * 109.47092 * 179.97438 * 6 5 4 40 40 H 1.08999 * 109.47078 * 179.97438 * 9 7 6 41 41 H 1.09003 * 109.46930 * 300.00020 * 9 7 6 42 42 H 1.09004 * 109.47408 * 59.99796 * 9 7 6 43 43 H 1.09004 * 109.47271 * 300.00302 * 10 7 6 44 44 H 0.97006 * 119.99659 * 334.99617 * 11 10 7 45 45 H 1.08999 * 109.58916 * 113.79637 * 17 16 14 46 46 H 1.09004 * 109.70538 * 353.44067 * 17 16 14 47 47 H 1.08998 * 109.49744 * 185.41288 * 18 17 16 48 48 H 1.08999 * 109.52352 * 65.33476 * 18 17 16 49 49 H 1.09002 * 109.46067 * 301.34513 * 19 18 17 50 50 H 1.09000 * 109.45571 * 181.38639 * 19 18 17 51 51 H 0.97003 * 119.99822 * 354.97653 * 25 24 22 52 52 H 1.09000 * 109.58623 * 6.63017 * 30 16 14 53 53 H 1.08999 * 109.58751 * 246.19965 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.5300 -2.1638 -1.2491 6 6 2.0399 -2.8850 0.0002 7 6 1.5298 -2.1637 1.2494 8 1 0.4399 -2.1636 1.2494 9 6 2.0402 -2.8845 2.4987 10 6 2.0399 -0.7212 1.2493 11 7 1.5520 -0.0307 2.4457 12 6 2.2289 1.0261 2.9371 13 8 3.2428 1.4053 2.3887 14 6 1.7314 1.7302 4.1578 15 8 0.6588 1.4277 4.6380 16 7 2.4741 2.7012 4.7255 17 6 3.8506 2.9501 4.2761 18 6 4.7819 2.9043 5.4917 19 6 4.2793 3.8871 6.5516 20 6 2.8752 3.4790 7.0033 21 1 2.9020 2.4654 7.4034 22 6 2.3941 4.4284 8.0701 23 1 2.9772 5.3032 8.3173 24 6 1.2096 4.1801 8.7308 25 7 0.7305 5.0657 9.5769 26 14 0.2856 2.5859 8.4242 27 1 -0.6681 2.7745 7.3018 28 1 -0.4612 2.2032 9.6494 29 1 1.2516 1.5125 8.0779 30 6 1.9223 3.5313 5.8049 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 3.1300 -0.7218 -1.2489 35 1 1.6767 -0.2075 -2.1391 36 1 1.8930 -2.6776 -2.1392 37 1 0.4399 -2.1638 -1.2492 38 1 3.1299 -2.8851 0.0002 39 1 1.6762 -3.9125 0.0005 40 1 1.6772 -2.3704 3.3886 41 1 1.6772 -3.9124 2.4989 42 1 3.1303 -2.8842 2.4986 43 1 3.1299 -0.7213 1.2494 44 1 0.7415 -0.3340 2.8842 45 1 3.9100 3.9322 3.8071 46 1 4.1474 2.1843 3.5594 47 1 5.7910 3.1819 5.1874 48 1 4.7912 1.8960 5.9056 49 1 4.2473 4.8916 6.1294 50 1 4.9541 3.8745 7.4075 51 1 1.2451 5.8595 9.7913 52 1 0.9452 3.1473 6.0980 53 1 1.8245 4.5608 5.4605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330851486.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:26 Heat of formation + Delta-G solvation = -107.511492 kcal Electronic energy + Delta-G solvation = -31241.098849 eV Core-core repulsion = 27303.930593 eV Total energy + Delta-G solvation = -3937.168255 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.20595 -40.84621 -39.33202 -38.67480 -35.74526 -35.11563 -34.12128 -33.62077 -32.18304 -31.43870 -28.21700 -27.42517 -26.97039 -26.70131 -24.52466 -23.46063 -22.84417 -22.16266 -21.33797 -20.60946 -19.84483 -19.70848 -18.55957 -18.15864 -17.32366 -16.93940 -16.41369 -16.06138 -15.96034 -15.75417 -15.59072 -15.33755 -15.13282 -15.03200 -14.78714 -14.50536 -14.38420 -14.08740 -13.96292 -13.79129 -13.53221 -13.29811 -13.17271 -12.93839 -12.90983 -12.62414 -12.50273 -12.29732 -12.26118 -12.05039 -12.02883 -11.76883 -11.75276 -11.57249 -11.36113 -11.35403 -11.24408 -10.96116 -10.93649 -10.68572 -10.32906 -10.04886 -9.74794 -8.77300 -6.46746 0.28543 1.25776 1.40728 1.43216 1.60316 2.05649 2.34695 2.45595 3.01437 3.23753 3.57491 3.71566 3.87534 3.95707 4.07865 4.09967 4.14159 4.14651 4.34360 4.36388 4.38266 4.46348 4.49452 4.53284 4.59069 4.65832 4.70529 4.76222 4.81714 4.83966 4.89174 4.95364 4.97889 5.03703 5.04480 5.09490 5.14483 5.21112 5.24025 5.26964 5.28418 5.34740 5.38780 5.41749 5.45739 5.47535 5.55652 5.62937 5.92398 5.98978 6.01326 6.27570 6.52701 6.65846 6.88444 7.30824 8.60171 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018762 B = 0.003100 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.985941 B = 9029.980090 C = 9597.883080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 H 0.053 0.947 4 C -0.108 4.108 5 C -0.121 4.121 6 C -0.106 4.106 7 C -0.095 4.095 8 H 0.088 0.912 9 C -0.151 4.151 10 C 0.153 3.847 11 N -0.679 5.679 12 C 0.521 3.479 13 O -0.521 6.521 14 C 0.489 3.511 15 O -0.558 6.558 16 N -0.578 5.578 17 C 0.073 3.927 18 C -0.126 4.126 19 C -0.099 4.099 20 C 0.004 3.996 21 H 0.021 0.979 22 C -0.586 4.586 23 H 0.032 0.968 24 C -0.014 4.014 25 N -0.941 5.941 26 Si 1.082 2.918 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.266 1.266 30 C 0.111 3.889 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.415 0.585 45 H 0.073 0.927 46 H 0.144 0.856 47 H 0.101 0.899 48 H 0.058 0.942 49 H 0.052 0.948 50 H 0.053 0.947 51 H 0.257 0.743 52 H 0.061 0.939 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.165 -18.372 -25.180 31.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.121 4.121 3 H 0.071 0.929 4 C -0.146 4.146 5 C -0.158 4.158 6 C -0.144 4.144 7 C -0.113 4.113 8 H 0.106 0.894 9 C -0.208 4.208 10 C 0.050 3.950 11 N -0.330 5.330 12 C 0.302 3.698 13 O -0.399 6.399 14 C 0.272 3.728 15 O -0.437 6.437 16 N -0.310 5.310 17 C -0.047 4.047 18 C -0.164 4.164 19 C -0.137 4.137 20 C -0.016 4.016 21 H 0.040 0.960 22 C -0.625 4.625 23 H 0.051 0.949 24 C -0.213 4.213 25 N -0.578 5.578 26 Si 0.907 3.093 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.191 1.191 30 C -0.011 4.011 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.252 0.748 45 H 0.092 0.908 46 H 0.161 0.839 47 H 0.120 0.880 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.072 0.928 51 H 0.067 0.933 52 H 0.079 0.921 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.957 -19.070 -24.946 31.539 hybrid contribution 0.856 1.809 0.757 2.140 sum 3.813 -17.261 -24.189 29.960 Atomic orbital electron populations 1.21921 0.94422 1.02837 1.01441 1.21450 0.96828 0.99014 0.94781 0.92886 1.21509 1.00702 0.96196 0.96207 1.21609 1.01464 0.94622 0.98106 1.21542 1.01097 0.99351 0.92417 1.21441 1.01666 0.91646 0.96590 0.89402 1.21864 1.01295 1.00936 0.96701 1.21344 0.99451 0.91809 0.82426 1.45908 1.28624 1.29213 1.29273 1.19766 0.84025 0.81650 0.84369 1.90459 1.24270 1.65062 1.60138 1.20640 0.85144 0.81460 0.85598 1.90723 1.23737 1.65006 1.64227 1.48390 1.15476 1.32242 1.34858 1.22956 0.78368 1.05376 0.98034 1.21958 0.99783 0.99490 0.95194 1.21413 0.95681 0.98616 0.98016 1.19415 0.93848 0.96376 0.91966 0.96045 1.22235 1.09166 1.10011 1.21053 0.94923 1.26862 0.96865 1.04137 0.93486 1.70905 1.39143 1.11259 1.36445 0.83447 0.76206 0.73416 0.76226 1.19948 1.21038 1.19108 1.22247 0.98286 0.93318 0.87277 0.94181 0.92158 0.90454 0.91903 0.91098 0.90647 0.91044 0.91662 0.90020 0.93686 0.90917 0.92814 0.89917 0.74780 0.90823 0.83907 0.88016 0.92363 0.92893 0.92846 0.93346 0.92089 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.34 71.98 0.60 -1.58 16 2 C -0.10 -1.61 2.88 -10.79 -0.03 -1.64 16 3 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.11 -1.25 5.45 30.59 0.17 -1.09 16 5 C -0.12 -1.02 5.65 30.59 0.17 -0.84 16 6 C -0.11 -0.94 5.20 30.60 0.16 -0.78 16 7 C -0.09 -1.13 2.02 -10.79 -0.02 -1.15 16 8 H 0.09 0.97 6.43 -2.39 -0.02 0.95 16 9 C -0.15 -1.99 9.03 71.98 0.65 -1.34 16 10 C 0.15 2.57 1.59 44.99 0.07 2.65 16 11 N -0.68 -14.90 3.61 -443.86 -1.60 -16.50 16 12 C 0.52 14.94 7.71 87.27 0.67 15.61 16 13 O -0.52 -15.33 12.84 -3.24 -0.04 -15.37 16 14 C 0.49 17.75 7.73 87.27 0.67 18.43 16 15 O -0.56 -23.08 15.93 -3.24 -0.05 -23.13 16 16 N -0.58 -21.88 2.97 -820.47 -2.44 -24.32 16 17 C 0.07 2.26 5.98 86.36 0.52 2.78 16 18 C -0.13 -3.84 6.08 30.67 0.19 -3.66 16 19 C -0.10 -3.87 5.11 30.62 0.16 -3.72 16 20 C 0.00 0.18 1.82 -11.46 -0.02 0.16 16 21 H 0.02 1.07 6.53 -2.39 -0.02 1.06 16 22 C -0.59 -33.53 8.90 25.60 0.23 -33.30 16 23 H 0.03 2.00 7.98 -2.91 -0.02 1.98 16 24 C -0.01 -0.86 5.43 84.66 0.46 -0.40 16 25 N -0.94 -59.97 13.70 21.45 0.29 -59.68 16 26 Si 1.08 55.33 25.42 68.60 1.74 57.07 16 27 H -0.27 -13.77 6.82 99.48 0.68 -13.09 16 28 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 29 H -0.27 -12.91 6.33 99.48 0.63 -12.28 16 30 C 0.11 5.00 5.33 86.36 0.46 5.46 16 31 H 0.04 0.72 7.61 -2.39 -0.02 0.70 16 32 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.08 0.88 4.81 -2.39 -0.01 0.87 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.07 0.56 6.43 -2.38 -0.02 0.55 16 38 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.04 0.73 7.44 -2.39 -0.02 0.71 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 42 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.08 1.60 7.58 -2.38 -0.02 1.58 16 44 H 0.42 8.76 7.88 -92.70 -0.73 8.03 16 45 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.14 4.16 4.32 -47.57 -0.21 3.95 16 47 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 48 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 50 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 51 H 0.26 16.38 8.72 -92.71 -0.81 15.57 16 52 H 0.06 3.02 3.55 -2.39 -0.01 3.02 16 53 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -69.28 390.38 2.84 -66.44 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -0.16 Total: 19.90 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 5.10 Total: -4.42 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -3.75 Total: -100.49 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.09 Total: -38.50 kcal Atomic # 14 Polarization: 55.33 SS G_CDS: 1.74 Total: 57.07 kcal Total: -69.28 2.84 -66.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330851486.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.070 kcal (2) G-P(sol) polarization free energy of solvation -69.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds