Wall clock time and date at job start Tue Mar 31 2020 20:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.78416 * 2 1 4 4 C 1.54243 * 109.62892 * 239.51878 * 2 1 3 5 5 C 1.45538 * 112.40420 * 160.31069 * 4 2 1 6 6 C 1.54243 * 112.41195 * 61.93849 * 5 4 2 7 7 C 1.50469 * 108.51502 * 280.00396 * 6 5 4 8 8 H 1.09003 * 108.87546 * 333.47327 * 7 6 5 9 9 N 1.46497 * 108.87881 * 214.93476 * 7 6 5 10 10 C 1.34773 * 120.00371 * 83.55127 * 9 7 6 11 11 O 1.21342 * 119.99961 * 0.02562 * 10 9 7 12 12 C 1.49453 * 120.00097 * 180.02562 * 10 9 7 13 13 O 1.21350 * 119.99711 * 353.42726 * 12 10 9 14 14 N 1.34770 * 120.00171 * 173.42715 * 12 10 9 15 15 C 1.46926 * 120.63105 * 351.39408 * 14 12 10 16 16 C 1.53190 * 108.78016 * 233.60949 * 15 14 12 17 17 C 1.53034 * 109.31175 * 305.36803 * 16 15 14 18 18 C 1.53043 * 109.54221 * 61.36106 * 17 16 15 19 19 H 1.08996 * 109.49650 * 58.61745 * 18 17 16 20 20 C 1.50704 * 109.49918 * 178.68408 * 18 17 16 21 21 H 1.07997 * 119.99934 * 31.17645 * 20 18 17 22 22 C 1.37877 * 119.99868 * 211.17487 * 20 18 17 23 23 N 1.31514 * 119.99975 * 350.86464 * 22 20 18 24 24 Si 1.86798 * 119.99834 * 170.86492 * 22 20 18 25 25 H 1.48502 * 109.47065 * 89.99898 * 24 22 20 26 26 H 1.48501 * 109.47185 * 330.00200 * 24 22 20 27 27 H 1.48494 * 109.47264 * 209.99759 * 24 22 20 28 28 C 1.46927 * 120.63309 * 171.39988 * 14 12 10 29 29 C 1.54062 * 112.42233 * 94.19973 * 7 6 5 30 30 C 1.50476 * 109.63173 * 120.48201 * 2 1 3 31 31 H 1.09006 * 109.47543 * 180.48191 * 1 2 3 32 32 H 1.09005 * 109.47383 * 300.48243 * 1 2 3 33 33 H 1.09004 * 109.47347 * 60.47957 * 1 2 3 34 34 H 1.09001 * 108.89377 * 39.55523 * 4 2 1 35 35 H 1.09005 * 108.89579 * 281.06696 * 4 2 1 36 36 H 1.08996 * 108.89350 * 301.18215 * 5 4 2 37 37 H 1.09000 * 108.89663 * 182.69631 * 5 4 2 38 38 H 1.08991 * 109.63268 * 160.29205 * 6 5 4 39 39 H 1.09004 * 109.78931 * 39.80295 * 6 5 4 40 40 H 0.97003 * 119.99393 * 263.55595 * 9 7 6 41 41 H 1.08996 * 109.58780 * 113.81915 * 15 14 12 42 42 H 1.09002 * 109.70297 * 353.47004 * 15 14 12 43 43 H 1.08997 * 109.50100 * 185.40800 * 16 15 14 44 44 H 1.09008 * 109.52019 * 65.32666 * 16 15 14 45 45 H 1.08998 * 109.46005 * 301.33935 * 17 16 15 46 46 H 1.09003 * 109.46367 * 181.38076 * 17 16 15 47 47 H 0.96997 * 120.00239 * 3.80665 * 23 22 20 48 48 H 1.09000 * 109.58758 * 6.59519 * 28 14 12 49 49 H 1.09001 * 109.58383 * 246.17695 * 28 14 12 50 50 H 1.09003 * 108.81156 * 79.09999 * 29 7 6 51 51 H 1.09002 * 108.81724 * 197.37206 * 29 7 6 52 52 H 1.09009 * 108.87249 * 334.63888 * 30 2 1 53 53 H 1.09004 * 108.87300 * 93.17234 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0481 -0.7369 -1.2520 5 6 3.4276 -0.3954 -1.5655 6 6 4.4028 -0.7946 -0.4391 7 6 4.3396 0.2515 0.6407 8 1 4.0334 1.1986 0.1965 9 7 5.6738 0.4117 1.2241 10 6 6.5774 1.2155 0.6292 11 8 6.2856 1.8069 -0.3894 12 6 7.9387 1.3785 1.2242 13 8 8.1924 0.8843 2.3030 14 7 8.8844 2.0743 0.5625 15 6 8.6580 2.5173 -0.8200 16 6 9.8205 2.0301 -1.6906 17 6 11.1417 2.5097 -1.0853 18 6 11.3071 1.9183 0.3165 19 1 11.2862 0.8301 0.2570 20 6 12.6233 2.3651 0.8989 21 1 13.0344 3.3267 0.6294 22 6 13.3025 1.5462 1.7759 23 7 12.7250 0.4614 2.2441 24 14 15.0431 1.9777 2.2990 25 1 14.9979 2.8271 3.5162 26 1 15.7200 2.7177 1.2039 27 1 15.7950 0.7313 2.5929 28 6 10.1614 2.4042 1.2098 29 6 3.3473 -0.1182 1.7597 30 6 2.0355 -0.7189 1.2214 31 1 -0.3634 -1.0277 0.0086 32 1 -0.3634 0.5213 0.8857 33 1 -0.3634 0.5064 -0.8943 34 1 1.4177 -0.4751 -2.1018 35 1 1.9802 -1.8116 -1.0825 36 1 3.4969 0.6802 -1.7275 37 1 3.7186 -0.9080 -2.4824 38 1 5.4165 -0.8511 -0.8353 39 1 4.1157 -1.7626 -0.0283 40 1 5.9069 -0.0608 2.0385 41 1 8.6090 3.6057 -0.8515 42 1 7.7227 2.0986 -1.1916 43 1 9.7143 2.4328 -2.6979 44 1 9.8133 0.9409 -1.7315 45 1 11.1384 3.5979 -1.0222 46 1 11.9692 2.1852 -1.7162 47 1 11.8429 0.2077 1.9305 48 1 10.2185 1.9089 2.1791 49 1 10.2351 3.4834 1.3438 50 1 3.8201 -0.8418 2.4238 51 1 3.1121 0.7794 2.3317 52 1 1.2760 -0.6655 2.0016 53 1 2.2077 -1.7652 0.9687 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330952746.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:56 Heat of formation + Delta-G solvation = -108.661209 kcal Electronic energy + Delta-G solvation = -30524.234872 eV Core-core repulsion = 26587.016761 eV Total energy + Delta-G solvation = -3937.218111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.15996 -40.63941 -39.39547 -38.69189 -36.39300 -35.41720 -33.73226 -33.51077 -32.41629 -31.64126 -28.55698 -27.51692 -26.60151 -25.78370 -24.38386 -23.73137 -23.48084 -21.86514 -21.52816 -20.79906 -20.14274 -19.08144 -18.43434 -18.06639 -17.14785 -17.06614 -16.45339 -16.11807 -15.95783 -15.65955 -15.48405 -15.38547 -15.25637 -15.02536 -14.86264 -14.53941 -14.47146 -14.12595 -13.92700 -13.71494 -13.44569 -13.34998 -13.33361 -13.06601 -12.86338 -12.66650 -12.38217 -12.21433 -12.12769 -11.93757 -11.90093 -11.78751 -11.71616 -11.51382 -11.36004 -11.22495 -11.19819 -11.05346 -10.76402 -10.62939 -10.36619 -10.12808 -9.69930 -8.65597 -6.36764 0.26038 1.24422 1.52782 1.61911 1.79009 2.03502 2.43352 2.57150 3.17144 3.21429 3.52926 3.69833 3.93924 3.98405 4.05493 4.07066 4.12388 4.15117 4.20936 4.32713 4.38975 4.41292 4.45561 4.49935 4.62859 4.65719 4.72820 4.76392 4.83731 4.87341 4.92839 4.99061 5.01866 5.03717 5.10918 5.13920 5.14667 5.18657 5.20240 5.25537 5.35410 5.40141 5.42943 5.47827 5.49383 5.50205 5.58408 5.63204 5.91785 6.06420 6.18374 6.27107 6.57068 6.66443 6.86425 7.45119 8.73106 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025473 B = 0.002400 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.940066 B =11665.646723 C =12268.333169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.063 0.937 4 C -0.111 4.111 5 C -0.110 4.110 6 C -0.125 4.125 7 C 0.145 3.855 8 H 0.081 0.919 9 N -0.687 5.687 10 C 0.520 3.480 11 O -0.519 6.519 12 C 0.485 3.515 13 O -0.562 6.562 14 N -0.577 5.577 15 C 0.074 3.926 16 C -0.127 4.127 17 C -0.101 4.101 18 C 0.020 3.980 19 H -0.001 1.001 20 C -0.605 4.605 21 H 0.054 0.946 22 C -0.033 4.033 23 N -0.933 5.933 24 Si 1.118 2.882 25 H -0.275 1.275 26 H -0.266 1.266 27 H -0.286 1.286 28 C 0.126 3.874 29 C -0.121 4.121 30 C -0.105 4.105 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.083 0.917 40 H 0.414 0.586 41 H 0.076 0.924 42 H 0.141 0.859 43 H 0.102 0.898 44 H 0.046 0.954 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.256 0.744 48 H 0.046 0.954 49 H 0.063 0.937 50 H 0.076 0.924 51 H 0.069 0.931 52 H 0.077 0.923 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.278 -1.464 -7.117 26.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 H 0.082 0.918 4 C -0.148 4.148 5 C -0.148 4.148 6 C -0.164 4.164 7 C 0.042 3.958 8 H 0.099 0.901 9 N -0.339 5.339 10 C 0.301 3.699 11 O -0.398 6.398 12 C 0.268 3.732 13 O -0.441 6.441 14 N -0.308 5.308 15 C -0.046 4.046 16 C -0.165 4.165 17 C -0.138 4.138 18 C 0.000 4.000 19 H 0.017 0.983 20 C -0.644 4.644 21 H 0.073 0.927 22 C -0.232 4.232 23 N -0.570 5.570 24 Si 0.940 3.060 25 H -0.201 1.201 26 H -0.190 1.190 27 H -0.212 1.212 28 C 0.004 3.996 29 C -0.159 4.159 30 C -0.143 4.143 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.251 0.749 41 H 0.095 0.905 42 H 0.158 0.842 43 H 0.121 0.879 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.081 0.919 50 H 0.094 0.906 51 H 0.087 0.913 52 H 0.095 0.905 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.142 -1.770 -6.315 25.016 hybrid contribution -0.583 0.204 -0.260 0.670 sum -24.724 -1.566 -6.575 25.631 Atomic orbital electron populations 1.21853 0.94193 1.02137 1.01858 1.20961 0.96162 0.99500 0.94727 0.91847 1.20552 0.95438 1.00777 0.98052 1.20355 0.95296 1.01421 0.97739 1.21763 0.99530 0.99262 0.95823 1.21214 0.79672 1.00260 0.94605 0.90096 1.46160 1.13441 1.45044 1.29264 1.19792 0.85425 0.80329 0.84324 1.90448 1.78277 1.47398 1.23635 1.20682 0.86902 0.79980 0.85614 1.90733 1.81656 1.48335 1.23406 1.48449 1.15285 1.51512 1.15579 1.22923 1.02043 1.00962 0.78689 1.21955 0.94319 1.00353 0.99881 1.21500 0.96566 0.99924 0.95846 1.19149 0.92773 0.94723 0.93316 0.98313 1.22237 1.05812 1.05604 1.30709 0.92724 1.27386 1.08131 0.93768 0.93909 1.70893 1.17390 1.27499 1.41245 0.82931 0.70454 0.75910 0.76748 1.20113 1.19048 1.21182 1.22041 0.81489 0.99022 0.97020 1.22150 0.95175 1.02140 0.96397 1.21342 0.95095 1.00041 0.97786 0.92126 0.92440 0.92650 0.91576 0.91403 0.92764 0.91777 0.93366 0.89830 0.74870 0.90530 0.84219 0.87944 0.93526 0.92295 0.93037 0.93380 0.93551 0.91865 0.90565 0.91267 0.90484 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.87 71.98 0.64 -0.65 16 2 C -0.10 -1.05 2.40 -11.19 -0.03 -1.08 16 3 H 0.06 0.85 6.98 -2.39 -0.02 0.83 16 4 C -0.11 -1.27 4.69 28.74 0.13 -1.14 16 5 C -0.11 -1.68 5.26 28.74 0.15 -1.52 16 6 C -0.13 -2.22 5.26 30.20 0.16 -2.06 16 7 C 0.15 2.70 1.97 44.53 0.09 2.79 16 8 H 0.08 1.71 6.03 -2.39 -0.01 1.69 16 9 N -0.69 -16.82 4.94 -446.07 -2.20 -19.02 16 10 C 0.52 16.38 7.47 87.27 0.65 17.04 16 11 O -0.52 -16.46 12.82 -3.22 -0.04 -16.50 16 12 C 0.49 19.38 7.73 87.27 0.67 20.05 16 13 O -0.56 -25.89 15.93 -3.25 -0.05 -25.95 16 14 N -0.58 -23.57 2.97 -820.50 -2.44 -26.01 16 15 C 0.07 2.48 5.98 86.36 0.52 3.00 16 16 C -0.13 -4.24 6.08 30.67 0.19 -4.05 16 17 C -0.10 -4.10 5.15 30.62 0.16 -3.94 16 18 C 0.02 1.02 1.93 -11.46 -0.02 0.99 16 19 H 0.00 -0.08 6.79 -2.39 -0.02 -0.10 16 20 C -0.61 -33.85 8.30 25.60 0.21 -33.63 16 21 H 0.05 2.97 7.83 -2.91 -0.02 2.95 16 22 C -0.03 -1.93 5.44 84.65 0.46 -1.47 16 23 N -0.93 -59.02 13.62 21.45 0.29 -58.73 16 24 Si 1.12 50.72 29.91 68.60 2.05 52.78 16 25 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 27 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 28 C 0.13 6.10 5.69 86.36 0.49 6.60 16 29 C -0.12 -1.62 5.39 31.29 0.17 -1.45 16 30 C -0.10 -1.09 4.89 30.11 0.15 -0.94 16 31 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.06 0.49 8.11 -2.38 -0.02 0.47 16 33 H 0.05 0.50 8.13 -2.38 -0.02 0.48 16 34 H 0.07 0.70 7.97 -2.39 -0.02 0.69 16 35 H 0.07 0.70 7.47 -2.38 -0.02 0.68 16 36 H 0.05 0.96 7.47 -2.39 -0.02 0.94 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.05 1.08 7.74 -2.39 -0.02 1.06 16 39 H 0.08 1.24 6.99 -2.39 -0.02 1.23 16 40 H 0.41 9.75 7.93 -92.71 -0.74 9.02 16 41 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.14 4.45 4.32 -47.80 -0.21 4.24 16 43 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.26 16.71 6.61 -92.71 -0.61 16.10 16 48 H 0.05 2.59 6.87 -2.39 -0.02 2.57 16 49 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 50 H 0.08 0.95 7.91 -2.39 -0.02 0.94 16 51 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.08 0.68 7.69 -2.38 -0.02 0.66 16 53 H 0.07 0.68 6.63 -2.39 -0.02 0.67 16 Total: -1.00 -69.86 396.74 2.52 -67.33 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.12 Total: 27.57 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 4.79 Total: -1.47 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -4.35 Total: -103.76 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -0.09 Total: -42.45 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 2.05 Total: 52.78 kcal Total: -69.86 2.52 -67.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330952746.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.327 kcal (2) G-P(sol) polarization free energy of solvation -69.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds