Wall clock time and date at job start Tue Mar 31 2020 20:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 108.87667 * 2 1 4 4 C 1.54242 * 108.89551 * 241.39827 * 2 1 3 5 5 C 1.50470 * 108.68162 * 159.16014 * 4 2 1 6 6 C 1.54266 * 112.38996 * 93.93954 * 5 4 2 7 7 C 1.54068 * 112.94463 * 318.57119 * 6 5 4 8 8 H 1.09006 * 108.87548 * 78.95370 * 7 6 5 9 9 N 1.46501 * 108.80024 * 197.44916 * 7 6 5 10 10 C 1.34770 * 120.00328 * 277.93086 * 9 7 6 11 11 O 1.21356 * 119.99970 * 359.97438 * 10 9 7 12 12 C 1.49453 * 120.00590 * 179.97438 * 10 9 7 13 13 O 1.21348 * 119.99248 * 353.07208 * 12 10 9 14 14 N 1.34772 * 120.00329 * 173.07058 * 12 10 9 15 15 C 1.46925 * 120.63268 * 1.67636 * 14 12 10 16 16 C 1.52759 * 109.00823 * 233.58736 * 15 14 12 17 17 C 1.53040 * 109.38230 * 305.58309 * 16 15 14 18 18 C 1.53043 * 109.53741 * 61.24235 * 17 16 15 19 19 H 1.09006 * 109.52130 * 58.60403 * 18 17 16 20 20 C 1.50694 * 109.49964 * 178.68153 * 18 17 16 21 21 H 1.08000 * 120.00046 * 359.83838 * 20 18 17 22 22 C 1.37878 * 120.00260 * 179.83912 * 20 18 17 23 23 N 1.31516 * 119.99903 * 359.97438 * 22 20 18 24 24 Si 1.86804 * 120.00015 * 180.02562 * 22 20 18 25 25 H 1.48491 * 109.46979 * 89.99833 * 24 22 20 26 26 H 1.48502 * 109.46558 * 210.00083 * 24 22 20 27 27 H 1.48496 * 109.46998 * 329.99737 * 24 22 20 28 28 C 1.46923 * 120.62927 * 181.95705 * 14 12 10 29 29 C 1.50476 * 112.49890 * 318.17535 * 7 6 5 30 30 C 1.45543 * 108.89661 * 118.51201 * 2 1 3 31 31 H 1.09006 * 109.47303 * 178.60215 * 1 2 3 32 32 H 1.09007 * 109.47142 * 298.59948 * 1 2 3 33 33 H 1.08995 * 109.47620 * 58.60433 * 1 2 3 34 34 H 1.09007 * 109.62802 * 278.96203 * 4 2 1 35 35 H 1.08999 * 109.63102 * 39.34989 * 4 2 1 36 36 H 1.09003 * 108.87582 * 215.02257 * 5 4 2 37 37 H 1.09001 * 108.87971 * 333.47107 * 5 4 2 38 38 H 1.09005 * 108.83213 * 197.61806 * 6 5 4 39 39 H 1.08990 * 108.57624 * 79.34867 * 6 5 4 40 40 H 0.97003 * 119.99499 * 97.92383 * 9 7 6 41 41 H 1.09003 * 109.58469 * 353.41921 * 15 14 12 42 42 H 1.08999 * 109.58700 * 113.83857 * 15 14 12 43 43 H 1.09007 * 109.56324 * 185.54796 * 16 15 14 44 44 H 1.08995 * 109.38739 * 65.51447 * 16 15 14 45 45 H 1.09000 * 109.46038 * 301.22018 * 17 16 15 46 46 H 1.09002 * 109.44729 * 181.25528 * 17 16 15 47 47 H 0.96996 * 120.00218 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.58472 * 246.15504 * 28 14 12 49 49 H 1.08998 * 109.59191 * 6.43916 * 28 14 12 50 50 H 1.08997 * 109.63002 * 334.43788 * 29 7 6 51 51 H 1.09004 * 109.62640 * 213.85515 * 29 7 6 52 52 H 1.09003 * 108.89395 * 303.44644 * 30 2 1 53 53 H 1.08998 * 108.89907 * 62.03256 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8826 1.0314 0.0000 4 6 2.0294 -0.6986 -1.2812 5 6 3.4459 -0.2651 -1.5456 6 6 4.4803 -1.2414 -0.9483 7 6 4.0935 -1.7406 0.4570 8 1 3.3434 -2.5254 0.3584 9 7 5.2830 -2.3012 1.1028 10 6 5.6656 -3.5644 0.8304 11 8 5.0245 -4.2377 0.0504 12 6 6.8793 -4.1362 1.4888 13 8 7.5910 -3.4272 2.1695 14 7 7.1834 -5.4391 1.3266 15 6 6.3520 -6.3016 0.4760 16 6 5.9219 -7.5273 1.2798 17 6 7.1607 -8.2177 1.8551 18 6 7.8935 -7.2556 2.7930 19 1 7.2220 -6.9452 3.5936 20 6 9.0950 -7.9469 3.3841 21 1 9.3131 -8.9711 3.1197 22 6 9.9160 -7.2719 4.2623 23 7 9.6508 -6.0246 4.5839 24 14 11.4058 -8.1287 4.9944 25 1 12.5830 -7.9117 4.1157 26 1 11.6846 -7.5712 6.3423 27 1 11.1339 -9.5842 5.1073 28 6 8.3491 -6.0254 2.0019 29 6 3.5393 -0.6438 1.3254 30 6 2.0013 -0.6573 1.2100 31 1 -0.3634 -1.0274 -0.0251 32 1 -0.3634 0.4920 0.9023 33 1 -0.3634 0.5353 -0.8771 34 1 1.9967 -1.7797 -1.1453 35 1 1.3969 -0.4160 -2.1227 36 1 3.5985 -0.1966 -2.6227 37 1 3.6011 0.7201 -1.1059 38 1 5.4456 -0.7385 -0.8893 39 1 4.5718 -2.0999 -1.6134 40 1 5.7952 -1.7631 1.7265 41 1 5.4690 -5.7516 0.1503 42 1 6.9270 -6.6212 -0.3931 43 1 5.3876 -8.2207 0.6302 44 1 5.2683 -7.2148 2.0941 45 1 7.8252 -8.5083 1.0415 46 1 6.8566 -9.1050 2.4103 47 1 10.2286 -5.5495 5.2015 48 1 9.0903 -6.3221 1.2598 49 1 8.7849 -5.2926 2.6809 50 1 3.9233 0.3192 0.9887 51 1 3.8302 -0.8150 2.3618 52 1 1.5778 -0.1484 2.0759 53 1 1.6581 -1.6918 1.2064 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330952751.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:04 Heat of formation + Delta-G solvation = -98.812824 kcal Electronic energy + Delta-G solvation = -30535.395303 eV Core-core repulsion = 26598.604250 eV Total energy + Delta-G solvation = -3936.791053 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.06883 -40.55083 -39.36271 -38.54021 -36.40078 -35.17662 -33.69610 -33.46080 -32.27582 -31.59929 -28.46562 -27.52775 -26.85016 -25.76238 -24.32109 -23.64543 -23.46980 -21.73921 -21.18053 -20.57814 -20.21753 -18.82996 -18.21518 -17.95779 -17.24033 -16.90345 -16.51580 -16.41596 -15.91757 -15.69716 -15.50964 -15.25992 -15.00923 -14.85466 -14.63257 -14.45069 -14.40978 -13.92381 -13.89254 -13.63416 -13.50587 -13.28966 -13.07092 -12.98017 -12.87883 -12.53439 -12.48196 -12.30976 -12.17268 -12.06788 -11.91372 -11.72810 -11.58844 -11.36557 -11.34491 -11.26754 -11.15050 -11.06912 -10.99406 -10.56305 -10.29753 -9.93273 -9.56329 -8.12824 -6.29530 0.36338 1.35094 1.41603 1.42712 1.52640 2.15610 2.40668 2.57732 3.15218 3.29539 3.58167 3.74866 3.98483 4.05544 4.10272 4.14704 4.18295 4.28828 4.32499 4.34661 4.42325 4.48634 4.57710 4.69184 4.74041 4.80614 4.80916 4.86431 4.92002 4.99213 5.03014 5.04780 5.07239 5.14574 5.16592 5.21977 5.23368 5.28798 5.31460 5.33455 5.40703 5.43654 5.47452 5.53003 5.55331 5.59145 5.64535 5.82940 5.92818 6.03048 6.29128 6.44646 6.75752 6.83302 6.99155 7.40293 8.91186 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022757 B = 0.002449 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.082217 B =11431.352420 C =11885.734819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 H 0.077 0.923 4 C -0.116 4.116 5 C -0.107 4.107 6 C -0.126 4.126 7 C 0.147 3.853 8 H 0.079 0.921 9 N -0.686 5.686 10 C 0.522 3.478 11 O -0.519 6.519 12 C 0.483 3.517 13 O -0.560 6.560 14 N -0.573 5.573 15 C 0.048 3.952 16 C -0.123 4.123 17 C -0.107 4.107 18 C 0.039 3.961 19 H -0.010 1.010 20 C -0.536 4.536 21 H 0.062 0.938 22 C 0.011 3.989 23 N -0.915 5.915 24 Si 0.960 3.040 25 H -0.274 1.274 26 H -0.286 1.286 27 H -0.264 1.264 28 C 0.120 3.880 29 C -0.125 4.125 30 C -0.107 4.107 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.416 0.584 41 H 0.158 0.842 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.262 0.738 48 H 0.042 0.958 49 H 0.086 0.914 50 H 0.089 0.911 51 H 0.074 0.926 52 H 0.074 0.926 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.823 13.382 -12.140 25.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 H 0.095 0.905 4 C -0.153 4.153 5 C -0.145 4.145 6 C -0.165 4.165 7 C 0.044 3.956 8 H 0.098 0.902 9 N -0.337 5.337 10 C 0.303 3.697 11 O -0.398 6.398 12 C 0.265 3.735 13 O -0.440 6.440 14 N -0.304 5.304 15 C -0.072 4.072 16 C -0.161 4.161 17 C -0.145 4.145 18 C 0.020 3.980 19 H 0.008 0.992 20 C -0.574 4.574 21 H 0.081 0.919 22 C -0.189 4.189 23 N -0.553 5.553 24 Si 0.785 3.215 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.189 1.189 28 C -0.002 4.002 29 C -0.162 4.162 30 C -0.145 4.145 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.253 0.747 41 H 0.174 0.826 42 H 0.087 0.913 43 H 0.117 0.883 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.061 0.939 49 H 0.104 0.896 50 H 0.108 0.892 51 H 0.093 0.907 52 H 0.093 0.907 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.850 13.419 -12.231 25.461 hybrid contribution 1.609 -0.417 1.096 1.991 sum -16.241 13.002 -11.135 23.597 Atomic orbital electron populations 1.21924 0.94887 1.01740 1.02085 1.20098 0.96097 1.00241 0.94368 0.90498 1.21450 0.95860 1.00262 0.97760 1.21279 0.93811 0.98673 1.00765 1.22324 0.99818 0.99596 0.94781 1.21196 0.85181 0.96594 0.92626 0.90243 1.46207 1.29712 1.12288 1.45539 1.19952 0.84428 0.83402 0.81902 1.90241 1.55593 1.57590 1.36381 1.20551 0.86830 0.83512 0.82556 1.90730 1.52745 1.59578 1.40906 1.48486 1.28375 1.08001 1.45579 1.23297 0.98576 0.93078 0.92223 1.21807 0.97487 0.97141 0.99686 1.21562 0.96373 0.98055 0.98479 1.18901 0.94655 0.91849 0.92579 0.99220 1.21480 1.10618 0.99014 1.26282 0.91937 1.25895 1.00830 0.95497 0.96672 1.70054 1.39265 1.11114 1.34899 0.85526 0.79449 0.78973 0.77553 1.20001 1.21138 1.18865 1.21958 0.85375 0.98194 0.94685 1.21680 0.96689 0.98469 0.99398 1.20467 0.93649 1.01458 0.98932 0.93160 0.92419 0.92135 0.92651 0.90841 0.91413 0.90787 0.91905 0.93133 0.74677 0.82595 0.91251 0.88278 0.93440 0.92511 0.92749 0.92932 0.93944 0.89620 0.89236 0.90716 0.90718 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.97 71.98 0.65 -0.82 16 2 C -0.09 -0.95 2.22 -12.65 -0.03 -0.98 16 3 H 0.08 0.72 7.47 -2.39 -0.02 0.70 16 4 C -0.12 -1.40 4.97 30.20 0.15 -1.25 16 5 C -0.11 -1.36 5.34 30.20 0.16 -1.20 16 6 C -0.13 -2.27 5.36 31.38 0.17 -2.10 16 7 C 0.15 2.84 1.94 44.54 0.09 2.92 16 8 H 0.08 1.75 6.08 -2.38 -0.01 1.73 16 9 N -0.69 -17.44 4.93 -446.03 -2.20 -19.64 16 10 C 0.52 17.13 7.72 87.27 0.67 17.80 16 11 O -0.52 -17.07 12.69 -3.27 -0.04 -17.11 16 12 C 0.48 20.22 7.76 87.27 0.68 20.90 16 13 O -0.56 -26.89 15.91 -3.24 -0.05 -26.94 16 14 N -0.57 -24.76 2.98 -821.33 -2.45 -27.21 16 15 C 0.05 1.71 6.20 86.22 0.53 2.24 16 16 C -0.12 -4.23 6.06 30.53 0.19 -4.04 16 17 C -0.11 -4.40 5.11 30.62 0.16 -4.25 16 18 C 0.04 2.04 2.25 -11.46 -0.03 2.01 16 19 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 20 C -0.54 -29.77 8.56 25.60 0.22 -29.55 16 21 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 22 C 0.01 0.59 5.30 84.65 0.45 1.04 16 23 N -0.91 -55.02 11.39 21.45 0.24 -54.77 16 24 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 26 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 27 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 28 C 0.12 6.11 5.40 86.36 0.47 6.58 16 29 C -0.12 -1.77 5.17 30.20 0.16 -1.62 16 30 C -0.11 -1.33 4.44 28.74 0.13 -1.20 16 31 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.06 0.52 8.11 -2.38 -0.02 0.50 16 33 H 0.06 0.52 8.12 -2.39 -0.02 0.50 16 34 H 0.05 0.83 6.98 -2.38 -0.02 0.81 16 35 H 0.07 0.76 7.96 -2.39 -0.02 0.74 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 0.78 6.65 -2.39 -0.02 0.77 16 38 H 0.06 1.15 8.12 -2.38 -0.02 1.14 16 39 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.42 10.17 7.97 -92.71 -0.74 9.43 16 41 H 0.16 5.25 3.79 -82.30 -0.31 4.94 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 44 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 48 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.09 5.08 5.13 -2.39 -0.01 5.07 16 50 H 0.09 1.05 6.99 -2.39 -0.02 1.03 16 51 H 0.07 1.12 7.86 -2.39 -0.02 1.10 16 52 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 53 H 0.05 0.81 7.46 -2.39 -0.02 0.79 16 Total: -1.00 -67.44 395.80 2.19 -65.25 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: -0.14 Total: 27.69 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 4.80 Total: 6.50 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -4.40 Total: -101.62 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -0.09 Total: -44.05 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -67.44 2.19 -65.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330952751.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.562 kcal (2) G-P(sol) polarization free energy of solvation -67.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds