Wall clock time and date at job start Tue Mar 31 2020 21:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.35328 * 2 1 4 4 C 1.54840 * 109.35757 * 240.27607 * 2 1 3 5 5 C 1.50127 * 110.81791 * 201.06058 * 4 2 1 6 6 H 1.09005 * 110.36777 * 338.64782 * 5 4 2 7 7 C 1.53003 * 110.24908 * 216.65911 * 5 4 2 8 8 C 1.52528 * 105.41445 * 97.68178 * 5 4 2 9 9 C 1.46237 * 114.27858 * 270.59688 * 8 5 4 10 10 N 1.50172 * 107.53415 * 58.40498 * 9 8 5 11 11 C 1.34780 * 120.53459 * 109.56149 * 10 9 8 12 12 O 1.21346 * 119.99855 * 184.86092 * 11 10 9 13 13 C 1.49452 * 119.99892 * 4.87211 * 11 10 9 14 14 O 1.21354 * 119.99827 * 275.15807 * 13 11 10 15 15 N 1.34773 * 120.00428 * 95.15247 * 13 11 10 16 16 C 1.46926 * 120.63107 * 355.01903 * 15 13 11 17 17 C 1.53192 * 108.76856 * 126.35351 * 16 15 13 18 18 C 1.53034 * 109.30961 * 54.65873 * 17 16 15 19 19 C 1.53046 * 109.52920 * 298.61033 * 18 17 16 20 20 H 1.09001 * 109.49711 * 301.39497 * 19 18 17 21 21 C 1.50696 * 109.50019 * 181.32580 * 19 18 17 22 22 H 1.08003 * 119.99792 * 359.97438 * 21 19 18 23 23 C 1.37880 * 119.99644 * 180.02562 * 21 19 18 24 24 N 1.31511 * 120.00048 * 0.02562 * 23 21 19 25 25 Si 1.86807 * 119.99502 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47033 * 60.00598 * 25 23 21 27 27 H 1.48508 * 109.46683 * 179.97438 * 25 23 21 28 28 H 1.48491 * 109.47259 * 299.99980 * 25 23 21 29 29 C 1.46928 * 120.63125 * 174.98775 * 15 13 11 30 30 C 1.43432 * 118.92702 * 289.84379 * 10 9 8 31 31 H 1.09002 * 109.47450 * 179.72695 * 1 2 3 32 32 H 1.09003 * 109.47168 * 299.72339 * 1 2 3 33 33 H 1.08998 * 109.47296 * 59.72351 * 1 2 3 34 34 H 1.09008 * 109.20773 * 80.72014 * 4 2 1 35 35 H 1.09002 * 109.21382 * 321.40780 * 4 2 1 36 36 H 1.08998 * 109.47124 * 304.01430 * 7 5 4 37 37 H 1.08994 * 109.47541 * 64.02123 * 7 5 4 38 38 H 1.09008 * 109.46678 * 184.01776 * 7 5 4 39 39 H 1.08996 * 108.51937 * 149.35130 * 8 5 4 40 40 H 1.08999 * 108.51851 * 31.83637 * 8 5 4 41 41 H 1.09005 * 109.84487 * 298.90028 * 9 8 5 42 42 H 1.08997 * 109.90156 * 177.94674 * 9 8 5 43 43 H 1.08999 * 109.58547 * 246.15436 * 16 15 13 44 44 H 1.09006 * 109.58443 * 6.43464 * 16 15 13 45 45 H 1.08997 * 109.51177 * 294.69471 * 17 16 15 46 46 H 1.09002 * 109.48695 * 174.59921 * 17 16 15 47 47 H 1.09001 * 109.45988 * 178.60218 * 18 17 16 48 48 H 1.08994 * 109.46446 * 58.62624 * 18 17 16 49 49 H 0.97004 * 119.99429 * 180.02562 * 24 23 21 50 50 H 1.08996 * 109.58566 * 113.84932 * 29 15 13 51 51 H 1.08997 * 109.58679 * 353.42033 * 29 15 13 52 52 H 1.08996 * 108.15769 * 213.02484 * 30 10 9 53 53 H 1.08998 * 108.15856 * 329.59541 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8912 1.0284 0.0000 4 6 2.0432 -0.7243 -1.2687 5 6 3.4556 -1.1966 -1.0788 6 1 3.9416 -0.6300 -0.2845 7 6 4.2408 -1.0566 -2.3845 8 6 3.3423 -2.6660 -0.6858 9 6 3.2275 -2.8963 0.7538 10 7 2.0119 -2.1572 1.2346 11 6 0.9114 -2.8301 1.6253 12 8 -0.0950 -2.2235 1.9281 13 6 0.9307 -4.3233 1.6858 14 8 0.7028 -4.9740 0.6872 15 7 1.2014 -4.9471 2.8494 16 6 1.5860 -4.1769 4.0400 17 6 0.6587 -4.5621 5.1969 18 6 0.6958 -6.0796 5.3915 19 6 0.1951 -6.7707 4.1210 20 1 -0.8192 -6.4375 3.9012 21 6 0.2012 -8.2638 4.3248 22 1 0.5296 -8.6790 5.2661 23 6 -0.2117 -9.0998 3.3090 24 7 -0.6102 -8.5942 2.1623 25 14 -0.2035 -10.9507 3.5614 26 1 -1.0942 -11.2993 4.6973 27 1 -0.6895 -11.6205 2.3283 28 1 1.1790 -11.4036 3.8593 29 6 1.1169 -6.4104 2.9516 30 6 2.0388 -0.7235 1.2656 31 1 -0.3634 -1.0276 -0.0049 32 1 -0.3634 0.5095 0.8925 33 1 -0.3634 0.5181 -0.8875 34 1 2.0055 -0.0371 -2.1140 35 1 1.4031 -1.5819 -1.4758 36 1 3.7264 -1.5990 -3.1778 37 1 4.3141 -0.0029 -2.6533 38 1 5.2414 -1.4683 -2.2526 39 1 4.2248 -3.1912 -1.0512 40 1 2.4648 -3.0886 -1.1751 41 1 4.1152 -2.5181 1.2610 42 1 3.1146 -3.9623 0.9512 43 1 2.6177 -4.4066 4.3062 44 1 1.4908 -3.1111 3.8321 45 1 -0.3598 -4.2496 4.9667 46 1 0.9930 -4.0700 6.1103 47 1 0.0559 -6.3540 6.2302 48 1 1.7188 -6.3945 5.5970 49 1 -0.9010 -9.1824 1.4478 50 1 2.1103 -6.8223 3.1291 51 1 0.7098 -6.8184 2.0264 52 1 1.4326 -0.3905 2.1080 53 1 3.0659 -0.4068 1.4470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336491487.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:35 Heat of formation + Delta-G solvation = -100.341209 kcal Electronic energy + Delta-G solvation = -31786.297201 eV Core-core repulsion = 27849.439872 eV Total energy + Delta-G solvation = -3936.857328 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.22922 -40.55301 -39.06533 -38.42504 -35.60907 -35.33899 -35.03308 -33.55445 -31.67954 -30.48301 -28.71333 -27.58443 -27.09713 -26.50247 -24.52207 -23.98827 -23.51849 -21.90195 -21.05345 -20.38288 -19.49145 -19.01160 -18.21931 -17.97044 -17.60289 -16.76021 -16.52162 -16.26825 -15.77324 -15.59163 -15.32266 -15.28774 -15.02238 -14.82393 -14.53929 -14.43342 -14.36279 -14.08602 -13.87808 -13.67338 -13.55755 -13.36571 -13.07638 -12.86294 -12.80541 -12.75045 -12.58916 -12.33177 -12.28330 -12.21030 -12.05743 -11.87958 -11.70547 -11.66345 -11.38477 -11.29251 -11.22972 -11.11638 -10.98732 -10.57536 -10.47557 -9.83674 -9.62440 -8.12270 -6.29810 1.01407 1.19716 1.41720 1.42427 1.49032 1.51934 2.33876 2.42730 3.08294 3.17404 3.59132 3.78890 3.86630 3.91561 4.01928 4.07114 4.14806 4.16406 4.24713 4.28924 4.50625 4.51605 4.53356 4.65258 4.69170 4.70681 4.74156 4.77527 4.79975 4.82941 4.91064 4.97182 5.02307 5.03413 5.10291 5.16679 5.20939 5.22454 5.25202 5.27568 5.28532 5.40938 5.42350 5.42938 5.53731 5.56942 5.62803 5.84905 5.93257 5.95700 6.27283 6.33383 6.74828 6.80661 6.89819 7.40924 8.91413 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.003256 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.275260 B = 8596.541315 C = 9243.413056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.115 0.885 4 C -0.110 4.110 5 C -0.080 4.080 6 H 0.103 0.897 7 C -0.140 4.140 8 C -0.140 4.140 9 C 0.112 3.888 10 N -0.577 5.577 11 C 0.523 3.477 12 O -0.541 6.541 13 C 0.498 3.502 14 O -0.566 6.566 15 N -0.586 5.586 16 C 0.106 3.894 17 C -0.128 4.128 18 C -0.103 4.103 19 C 0.036 3.964 20 H -0.021 1.021 21 C -0.534 4.534 22 H 0.067 0.933 23 C 0.009 3.991 24 N -0.918 5.918 25 Si 0.960 3.040 26 H -0.270 1.270 27 H -0.291 1.291 28 H -0.263 1.263 29 C 0.125 3.875 30 C 0.107 3.893 31 H 0.019 0.981 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.026 0.974 36 H 0.041 0.959 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.033 0.967 41 H 0.128 0.872 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.039 0.961 46 H 0.109 0.891 47 H 0.054 0.946 48 H 0.069 0.931 49 H 0.260 0.740 50 H 0.056 0.944 51 H 0.077 0.923 52 H 0.068 0.932 53 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.205 20.239 -1.936 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.133 0.867 4 C -0.148 4.148 5 C -0.098 4.098 6 H 0.121 0.879 7 C -0.198 4.198 8 C -0.178 4.178 9 C -0.008 4.008 10 N -0.310 5.310 11 C 0.306 3.694 12 O -0.418 6.418 13 C 0.281 3.719 14 O -0.445 6.445 15 N -0.319 5.319 16 C -0.016 4.016 17 C -0.166 4.166 18 C -0.140 4.140 19 C 0.017 3.983 20 H -0.002 1.002 21 C -0.572 4.572 22 H 0.085 0.915 23 C -0.190 4.190 24 N -0.557 5.557 25 Si 0.785 3.215 26 H -0.195 1.195 27 H -0.217 1.217 28 H -0.187 1.187 29 C 0.004 3.996 30 C -0.016 4.016 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.051 0.949 41 H 0.146 0.854 42 H 0.081 0.919 43 H 0.122 0.878 44 H 0.101 0.899 45 H 0.058 0.942 46 H 0.127 0.873 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.069 0.931 50 H 0.075 0.925 51 H 0.095 0.905 52 H 0.086 0.914 53 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.501 20.164 -2.450 24.957 hybrid contribution -1.232 -1.693 -0.494 2.151 sum 13.269 18.470 -2.944 22.932 Atomic orbital electron populations 1.21826 0.96624 1.00179 1.01315 1.22232 0.94793 1.00584 0.94294 0.86720 1.21719 0.96104 0.99361 0.97629 1.20586 0.95388 0.94242 0.99560 0.87906 1.21841 0.99831 1.02272 0.95823 1.20942 1.02493 0.98732 0.95672 1.21422 0.87070 0.96438 0.95833 1.48200 1.12931 1.07589 1.62327 1.20067 0.84381 0.87129 0.77843 1.90747 1.32401 1.68355 1.50316 1.20739 0.77801 0.89155 0.84208 1.90776 1.50800 1.66853 1.36078 1.48615 1.64284 1.09038 1.09936 1.22023 1.00268 0.95056 0.84208 1.21909 0.98963 0.96847 0.98832 1.21512 1.01200 0.93897 0.97424 1.18938 0.92741 0.94755 0.91904 1.00234 1.21470 1.44137 0.91728 0.99894 0.91479 1.25927 0.94502 1.03685 0.94890 1.70086 1.44181 1.36541 1.04866 0.85577 0.79029 0.79676 0.77196 1.19511 1.21692 1.18718 1.21901 0.99110 0.75454 1.03150 1.21338 1.04191 0.77751 0.98302 0.96146 0.92784 0.92449 0.91070 0.95482 0.94026 0.91308 0.91481 0.89259 0.94859 0.85370 0.91926 0.87821 0.89851 0.94203 0.87315 0.92753 0.91256 0.93126 0.92532 0.90487 0.91408 0.86397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.38 71.98 0.60 -2.82 16 2 C -0.10 -1.73 3.17 -9.69 -0.03 -1.76 16 3 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.11 -2.01 4.66 30.30 0.14 -1.87 16 5 C -0.08 -1.09 2.49 -11.87 -0.03 -1.12 16 6 H 0.10 0.93 6.30 -2.38 -0.02 0.92 16 7 C -0.14 -1.62 8.84 71.98 0.64 -0.99 16 8 C -0.14 -2.68 4.75 28.36 0.13 -2.55 16 9 C 0.11 2.23 5.93 83.58 0.50 2.73 16 10 N -0.58 -14.21 2.58 -830.25 -2.14 -16.35 16 11 C 0.52 18.79 5.21 87.27 0.45 19.25 16 12 O -0.54 -22.12 14.69 -3.23 -0.05 -22.16 16 13 C 0.50 21.74 5.52 87.27 0.48 22.22 16 14 O -0.57 -30.00 16.53 -3.26 -0.05 -30.05 16 15 N -0.59 -24.10 2.97 -820.47 -2.44 -26.54 16 16 C 0.11 3.18 6.36 86.36 0.55 3.73 16 17 C -0.13 -4.01 6.08 30.67 0.19 -3.82 16 18 C -0.10 -3.94 5.11 30.62 0.16 -3.78 16 19 C 0.04 1.82 2.25 -11.46 -0.03 1.79 16 20 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 21 C -0.53 -29.15 8.56 25.60 0.22 -28.93 16 22 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 23 C 0.01 0.52 5.30 84.66 0.45 0.97 16 24 N -0.92 -56.26 11.40 21.45 0.24 -56.02 16 25 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 27 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 28 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 29 C 0.13 6.18 5.39 86.36 0.47 6.64 16 30 C 0.11 1.91 4.30 87.42 0.38 2.29 16 31 H 0.02 0.65 6.43 -2.39 -0.02 0.64 16 32 H 0.05 1.28 8.11 -2.39 -0.02 1.26 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.11 7.72 -2.38 -0.02 1.09 16 35 H 0.03 0.70 6.65 -2.39 -0.02 0.69 16 36 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.07 0.64 8.12 -2.38 -0.02 0.62 16 39 H 0.09 1.42 7.80 -2.39 -0.02 1.40 16 40 H 0.03 0.91 6.93 -2.39 -0.02 0.89 16 41 H 0.13 1.41 8.13 -2.38 -0.02 1.39 16 42 H 0.06 1.64 6.44 -2.39 -0.02 1.62 16 43 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.08 2.26 6.31 -2.38 -0.02 2.25 16 45 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 50 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 51 H 0.08 4.59 5.16 -2.39 -0.01 4.58 16 52 H 0.07 1.39 7.30 -2.39 -0.02 1.38 16 53 H 0.12 1.13 6.90 -2.39 -0.02 1.11 16 Total: -1.00 -77.80 395.22 3.73 -74.06 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.88 Total: 19.00 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 5.26 Total: 12.00 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -4.33 Total: -98.90 kcal Atomic # 8 Polarization: -52.11 SS G_CDS: -0.10 Total: -52.21 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -77.80 3.73 -74.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336491487.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.279 kcal (2) G-P(sol) polarization free energy of solvation -77.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds