Wall clock time and date at job start Tue Mar 31 2020 20:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47127 * 2 1 4 4 C 1.53002 * 109.47224 * 240.00649 * 2 1 3 5 5 C 1.52997 * 109.47224 * 179.97438 * 4 2 1 6 6 C 1.52993 * 109.47401 * 59.99793 * 5 4 2 7 7 C 1.53002 * 109.47100 * 300.00282 * 6 5 4 8 8 H 1.09005 * 109.46688 * 299.99367 * 7 6 5 9 9 N 1.46507 * 109.47143 * 179.97438 * 7 6 5 10 10 C 1.34778 * 119.99747 * 84.99466 * 9 7 6 11 11 O 1.21349 * 120.00405 * 0.02562 * 10 9 7 12 12 C 1.49456 * 119.99580 * 180.27701 * 10 9 7 13 13 O 1.21344 * 119.99987 * 6.46899 * 12 10 9 14 14 N 1.34774 * 119.99633 * 186.47527 * 12 10 9 15 15 C 1.46918 * 120.63312 * 8.41853 * 14 12 10 16 16 C 1.53630 * 108.54113 * 126.37387 * 15 14 12 17 17 C 1.53040 * 109.24156 * 54.85706 * 16 15 14 18 18 C 1.50700 * 109.45698 * 178.48969 * 17 16 15 19 19 H 1.07997 * 119.99854 * 120.06992 * 18 17 16 20 20 C 1.37871 * 120.00115 * 300.06868 * 18 17 16 21 21 N 1.31512 * 120.00557 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00121 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47397 * 89.99536 * 22 20 18 24 24 H 1.48501 * 109.47143 * 209.99929 * 22 20 18 25 25 H 1.48504 * 109.47047 * 329.99738 * 22 20 18 26 26 C 1.53037 * 109.53597 * 298.50905 * 17 16 15 27 27 C 1.46924 * 120.62782 * 188.70605 * 14 12 10 28 28 C 1.52990 * 109.47435 * 59.99794 * 7 6 5 29 29 H 1.09001 * 109.47543 * 180.02562 * 28 7 6 30 30 C 1.53004 * 109.47286 * 60.00085 * 28 7 6 31 31 H 1.09004 * 109.47127 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46896 * 299.99214 * 1 2 3 33 33 H 1.08998 * 109.47390 * 59.99152 * 1 2 3 34 34 H 1.08994 * 109.46861 * 59.99342 * 4 2 1 35 35 H 1.09005 * 109.46688 * 300.00242 * 4 2 1 36 36 H 1.08994 * 109.47042 * 299.99517 * 5 4 2 37 37 H 1.09004 * 109.46896 * 180.02562 * 5 4 2 38 38 H 1.08999 * 109.47214 * 179.97438 * 6 5 4 39 39 H 1.09004 * 109.47341 * 59.99689 * 6 5 4 40 40 H 0.96993 * 119.99937 * 264.99910 * 9 7 6 41 41 H 1.08997 * 109.59060 * 246.20185 * 15 14 12 42 42 H 1.09000 * 109.58823 * 6.63414 * 15 14 12 43 43 H 1.08999 * 109.63367 * 294.86115 * 16 15 14 44 44 H 1.09004 * 109.45632 * 174.74343 * 16 15 14 45 45 H 1.09001 * 109.45844 * 58.53542 * 17 16 15 46 46 H 0.96996 * 120.00635 * 180.02562 * 21 20 18 47 47 H 1.08995 * 109.50125 * 301.41577 * 26 17 16 48 48 H 1.09006 * 109.52107 * 181.33496 * 26 17 16 49 49 H 1.09009 * 109.58581 * 353.36882 * 27 14 12 50 50 H 1.08995 * 109.59027 * 113.64757 * 27 14 12 51 51 H 1.08999 * 109.47098 * 60.00302 * 30 28 7 52 52 H 1.08999 * 109.47110 * 179.97438 * 30 28 7 53 53 H 1.09001 * 109.46861 * 300.00456 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2497 6 6 4.0805 -1.4415 -0.0005 7 6 3.5705 -0.7204 1.2488 8 1 3.9336 0.3075 1.2486 9 7 4.0589 -1.4111 2.4449 10 6 5.2810 -1.1253 2.9363 11 8 5.9765 -0.2955 2.3883 12 6 5.7817 -1.8344 4.1530 13 8 5.1409 -2.7481 4.6294 14 7 6.9448 -1.4588 4.7209 15 6 7.6389 -0.2440 4.2726 16 6 7.9036 0.6470 5.4958 17 6 8.6651 -0.1584 6.5511 18 6 8.9598 0.7219 7.7382 19 1 8.5788 0.4584 8.7137 20 6 9.7160 1.8637 7.5789 21 7 10.1806 2.1845 6.3911 22 14 10.0820 2.9545 9.0506 23 1 11.3427 2.5084 9.6961 24 1 10.2278 4.3619 8.5995 25 1 8.9663 2.8605 10.0261 26 6 7.8144 -1.3493 6.9982 27 6 7.5459 -2.2599 5.7959 28 6 2.0406 -0.7209 1.2492 29 1 1.6772 -0.2068 2.1390 30 6 1.5311 -2.1636 1.2494 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.6766 -0.2072 -2.1392 35 1 1.6766 -1.7488 -1.2494 36 1 3.9329 0.3072 -1.2498 37 1 3.9333 -1.2339 -2.1400 38 1 5.1705 -1.4415 -0.0010 39 1 3.7176 -2.4693 -0.0003 40 1 3.5029 -2.0741 2.8831 41 1 8.5845 -0.5154 3.8034 42 1 7.0140 0.2911 3.5575 43 1 6.9558 0.9882 5.9124 44 1 8.4999 1.5085 5.1953 45 1 9.6014 -0.5200 6.1260 46 1 10.7129 2.9875 6.2791 47 1 6.8675 -0.9895 7.4006 48 1 8.3471 -1.9093 7.7669 49 1 6.8596 -3.0556 6.0861 50 1 8.4828 -2.6946 5.4475 51 1 1.8948 -2.6773 2.1393 52 1 0.4411 -2.1640 1.2501 53 1 1.8945 -2.6774 0.3594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340187312.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:29 Heat of formation + Delta-G solvation = -101.810448 kcal Electronic energy + Delta-G solvation = -30553.000124 eV Core-core repulsion = 26616.079085 eV Total energy + Delta-G solvation = -3936.921039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.14726 -40.81335 -39.40839 -38.57940 -35.93927 -35.16766 -33.52992 -33.04417 -31.75137 -31.59779 -28.64902 -28.14339 -26.75558 -26.02792 -24.26935 -23.91831 -22.88392 -22.20101 -21.44689 -20.66687 -19.43368 -18.68978 -18.35853 -18.05401 -17.18461 -16.90259 -16.56385 -16.43601 -16.14739 -15.59759 -15.51665 -15.29780 -14.98545 -14.78490 -14.64290 -14.54481 -14.30863 -14.01958 -13.85909 -13.47402 -13.39695 -13.21340 -13.17394 -12.83904 -12.78983 -12.54702 -12.49504 -12.37567 -12.29619 -12.16135 -12.13559 -11.97059 -11.58493 -11.52823 -11.29676 -11.16359 -11.04119 -11.02747 -10.98486 -10.46029 -10.31382 -10.00964 -9.69531 -8.08013 -6.22117 0.30232 1.29106 1.40894 1.42266 1.51738 2.07565 2.43288 2.46571 3.18335 3.25367 3.61160 3.69680 3.85658 4.08942 4.10916 4.18039 4.25992 4.29607 4.32853 4.38563 4.44340 4.48607 4.53847 4.54770 4.70859 4.73252 4.74554 4.81809 4.82374 4.92368 4.97365 5.03531 5.05202 5.12253 5.12937 5.15082 5.17890 5.23454 5.29854 5.34968 5.37146 5.38967 5.44901 5.48809 5.51061 5.62152 5.67932 5.95259 6.02103 6.09367 6.27140 6.37432 6.67559 6.87927 6.91880 7.45736 8.95634 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019119 B = 0.002464 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.175590 B =11360.526601 C =11861.140419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.128 4.128 7 C 0.146 3.854 8 H 0.074 0.926 9 N -0.682 5.682 10 C 0.510 3.490 11 O -0.527 6.527 12 C 0.500 3.500 13 O -0.551 6.551 14 N -0.571 5.571 15 C 0.082 3.918 16 C -0.112 4.112 17 C 0.043 3.957 18 C -0.534 4.534 19 H 0.051 0.949 20 C 0.014 3.986 21 N -0.914 5.914 22 Si 0.952 3.048 23 H -0.275 1.275 24 H -0.284 1.284 25 H -0.271 1.271 26 C -0.113 4.113 27 C 0.112 3.888 28 C -0.088 4.088 29 H 0.074 0.926 30 C -0.156 4.156 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.078 0.922 40 H 0.416 0.584 41 H 0.059 0.941 42 H 0.129 0.871 43 H 0.024 0.976 44 H 0.076 0.924 45 H 0.003 0.997 46 H 0.261 0.739 47 H 0.044 0.956 48 H 0.072 0.928 49 H 0.094 0.906 50 H 0.079 0.921 51 H 0.050 0.950 52 H 0.076 0.924 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.250 -7.926 -16.381 26.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.166 4.166 7 C 0.042 3.958 8 H 0.092 0.908 9 N -0.335 5.335 10 C 0.291 3.709 11 O -0.405 6.405 12 C 0.283 3.717 13 O -0.430 6.430 14 N -0.302 5.302 15 C -0.039 4.039 16 C -0.151 4.151 17 C 0.024 3.976 18 C -0.572 4.572 19 H 0.069 0.931 20 C -0.185 4.185 21 N -0.553 5.553 22 Si 0.778 3.222 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.196 1.196 26 C -0.151 4.151 27 C -0.010 4.010 28 C -0.107 4.107 29 H 0.092 0.908 30 C -0.213 4.213 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.255 0.745 41 H 0.077 0.923 42 H 0.146 0.854 43 H 0.043 0.957 44 H 0.095 0.905 45 H 0.022 0.978 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.091 0.909 49 H 0.113 0.887 50 H 0.097 0.903 51 H 0.069 0.931 52 H 0.094 0.906 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.986 -7.682 -16.595 26.361 hybrid contribution 0.700 0.640 1.287 1.598 sum -18.286 -7.042 -15.309 24.866 Atomic orbital electron populations 1.21853 0.93817 1.02607 1.02001 1.21085 0.96498 0.99013 0.93538 0.91595 1.21654 0.94310 1.01577 0.97482 1.21470 0.96512 1.00499 0.96696 1.21920 0.99970 1.00547 0.94178 1.21269 0.95104 0.96346 0.83058 0.90775 1.45959 1.15628 1.42526 1.29352 1.20084 0.83240 0.82626 0.84906 1.90525 1.55967 1.33790 1.60213 1.20269 0.81862 0.84425 0.85188 1.90675 1.56431 1.31763 1.64177 1.48200 1.21165 1.25752 1.35090 1.22917 0.98056 0.84607 0.98292 1.21874 0.98344 0.99705 0.95154 1.18651 0.92986 0.92113 0.93846 1.21545 1.32269 1.08315 0.95041 0.93083 1.25705 0.95635 0.98963 0.98190 1.69973 1.36065 1.26134 1.23169 0.85657 0.78543 0.78092 0.79949 1.20116 1.20951 1.19606 1.21848 0.99652 0.97075 0.96488 1.21855 0.98478 0.93756 0.86909 1.21367 0.91325 0.98433 0.99581 0.90777 1.22046 1.02332 0.94652 1.02234 0.91516 0.92845 0.91977 0.90826 0.90630 0.92420 0.90736 0.93593 0.90297 0.74475 0.92256 0.85407 0.95713 0.90543 0.97847 0.92966 0.93690 0.90916 0.88746 0.90312 0.93105 0.90559 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.84 71.98 0.64 -0.69 16 2 C -0.08 -0.95 2.49 -10.79 -0.03 -0.97 16 3 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 4 C -0.11 -1.16 4.93 30.59 0.15 -1.01 16 5 C -0.11 -1.55 5.92 30.59 0.18 -1.37 16 6 C -0.13 -2.24 5.22 30.59 0.16 -2.08 16 7 C 0.15 2.81 2.15 44.99 0.10 2.91 16 8 H 0.07 1.74 7.58 -2.38 -0.02 1.72 16 9 N -0.68 -15.87 4.99 -443.85 -2.21 -18.09 16 10 C 0.51 15.85 7.71 87.27 0.67 16.53 16 11 O -0.53 -18.54 12.84 -3.24 -0.04 -18.58 16 12 C 0.50 17.44 7.73 87.27 0.67 18.12 16 13 O -0.55 -19.78 15.93 -3.23 -0.05 -19.83 16 14 N -0.57 -21.43 2.97 -819.65 -2.43 -23.87 16 15 C 0.08 3.36 6.01 86.51 0.52 3.88 16 16 C -0.11 -5.40 5.17 30.82 0.16 -5.25 16 17 C 0.04 2.12 2.06 -11.51 -0.02 2.10 16 18 C -0.53 -29.39 8.56 25.60 0.22 -29.17 16 19 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 20 C 0.01 0.76 5.30 84.65 0.45 1.21 16 21 N -0.91 -52.43 11.31 21.44 0.24 -52.19 16 22 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 26 C -0.11 -4.65 5.30 30.67 0.16 -4.49 16 27 C 0.11 4.00 6.44 86.36 0.56 4.56 16 28 C -0.09 -1.22 2.41 -10.80 -0.03 -1.24 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 C -0.16 -1.74 7.97 71.98 0.57 -1.17 16 31 H 0.07 0.52 6.43 -2.38 -0.02 0.50 16 32 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.68 6.43 -2.38 -0.02 0.66 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.21 6.43 -2.38 -0.02 1.20 16 40 H 0.42 8.64 6.35 -92.71 -0.59 8.05 16 41 H 0.06 2.43 8.14 -2.39 -0.02 2.42 16 42 H 0.13 5.17 4.30 -48.62 -0.21 4.96 16 43 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 4.14 6.03 -2.38 -0.01 4.12 16 45 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 46 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 47 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.07 2.82 8.14 -2.38 -0.02 2.80 16 49 H 0.09 3.16 7.01 -2.38 -0.02 3.14 16 50 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 51 H 0.05 0.62 6.50 -2.39 -0.02 0.61 16 52 H 0.08 0.68 6.43 -2.39 -0.02 0.66 16 53 H 0.07 0.73 4.81 -2.39 -0.01 0.72 16 Total: -1.00 -62.96 391.45 2.79 -60.17 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.12 Total: 24.74 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 5.14 Total: 1.88 kcal Atomic # 7 Polarization: -89.74 SS G_CDS: -4.40 Total: -94.14 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -0.09 Total: -38.41 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -62.96 2.79 -60.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340187312.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.639 kcal (2) G-P(sol) polarization free energy of solvation -62.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds