Wall clock time and date at job start Tue Mar 31 2020 20:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47115 * 2 1 4 4 C 1.53003 * 109.46708 * 120.00377 * 2 1 3 5 5 C 1.53006 * 109.47004 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47031 * 300.00033 * 5 4 2 7 7 C 1.52999 * 109.47426 * 59.99809 * 6 5 4 8 8 H 1.08997 * 109.47303 * 59.99642 * 7 6 5 9 9 C 1.52993 * 109.47535 * 180.02562 * 7 6 5 10 10 N 1.46506 * 109.47152 * 294.99887 * 9 7 6 11 11 C 1.34770 * 120.00229 * 179.97438 * 10 9 7 12 12 O 1.21354 * 120.00112 * 359.97438 * 11 10 9 13 13 C 1.49449 * 119.99984 * 180.02562 * 11 10 9 14 14 O 1.21344 * 119.99897 * 353.06742 * 13 11 10 15 15 N 1.34780 * 119.99861 * 173.07254 * 13 11 10 16 16 C 1.46930 * 120.63063 * 1.66939 * 15 13 11 17 17 C 1.52762 * 109.00613 * 233.58378 * 16 15 13 18 18 C 1.53036 * 109.38594 * 305.58869 * 17 16 15 19 19 C 1.50700 * 109.45918 * 181.26015 * 18 17 16 20 20 H 1.08002 * 120.00196 * 239.93624 * 19 18 17 21 21 C 1.37883 * 120.00044 * 59.93668 * 19 18 17 22 22 N 1.31512 * 119.99565 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00103 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46989 * 89.99771 * 23 21 19 25 25 H 1.48500 * 109.47147 * 209.99745 * 23 21 19 26 26 H 1.48495 * 109.47177 * 330.00071 * 23 21 19 27 27 C 1.53046 * 109.53536 * 61.24299 * 18 17 16 28 28 C 1.46927 * 120.62886 * 181.95425 * 15 13 11 29 29 C 1.53004 * 109.47145 * 240.00048 * 2 1 3 30 30 H 1.09008 * 109.46890 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46704 * 59.99978 * 1 2 3 32 32 H 1.08998 * 109.47242 * 299.99544 * 1 2 3 33 33 H 1.09001 * 109.47047 * 299.99586 * 4 2 1 34 34 H 1.08997 * 109.47644 * 60.00502 * 4 2 1 35 35 H 1.08998 * 109.47458 * 179.97438 * 5 4 2 36 36 H 1.09007 * 109.47059 * 59.99419 * 5 4 2 37 37 H 1.08998 * 109.46984 * 300.00131 * 6 5 4 38 38 H 1.08997 * 109.46858 * 179.97438 * 6 5 4 39 39 H 1.09007 * 109.47005 * 54.99561 * 9 7 6 40 40 H 1.08998 * 109.47590 * 174.99775 * 9 7 6 41 41 H 0.97000 * 119.99804 * 0.02562 * 10 9 7 42 42 H 1.08995 * 109.58673 * 353.42389 * 16 15 13 43 43 H 1.09006 * 109.58334 * 113.84944 * 16 15 13 44 44 H 1.09000 * 109.55892 * 185.55427 * 17 16 15 45 45 H 1.09000 * 109.38500 * 65.51846 * 17 16 15 46 46 H 1.09000 * 109.46350 * 301.22327 * 18 17 16 47 47 H 0.97003 * 119.99816 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.49367 * 178.68070 * 27 18 17 49 49 H 1.08994 * 109.52564 * 58.60441 * 27 18 17 50 50 H 1.09002 * 109.58227 * 246.15493 * 28 15 13 51 51 H 1.09005 * 109.58716 * 6.57784 * 28 15 13 52 52 H 1.08997 * 109.47075 * 299.99977 * 29 2 1 53 53 H 1.08998 * 109.46888 * 60.00081 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5700 -0.7208 1.2496 6 6 4.0805 -1.4417 0.0004 7 6 3.5706 -0.7204 -1.2489 8 1 3.9335 0.3074 -1.2486 9 6 4.0806 -1.4415 -2.4981 10 7 5.5407 -1.3381 -2.5598 11 6 6.2137 -1.9036 -3.5814 12 8 5.6104 -2.4989 -4.4499 13 6 7.7032 -1.7986 -3.6440 14 8 8.2962 -1.1006 -2.8479 15 7 8.3878 -2.4791 -4.5846 16 6 7.6813 -3.2992 -5.5781 17 6 8.2574 -4.7139 -5.5558 18 6 9.7730 -4.6483 -5.7576 19 6 10.3391 -6.0449 -5.7668 20 1 11.0771 -6.3333 -5.0329 21 6 9.9149 -6.9546 -6.7122 22 7 9.0160 -6.6035 -7.6056 23 14 10.6171 -8.6854 -6.7240 24 1 9.7828 -9.5640 -5.8653 25 1 10.6195 -9.2092 -8.1136 26 1 12.0073 -8.6592 -6.2025 27 6 10.4071 -3.8486 -4.6171 28 6 9.8551 -2.4197 -4.6322 29 6 2.0400 -0.7213 -1.2493 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5137 0.8900 33 1 1.6766 -0.2075 2.1392 34 1 1.6767 -1.7490 1.2492 35 1 3.9333 -1.2343 2.1398 36 1 3.9330 0.3070 1.2498 37 1 3.7175 -2.4694 0.0001 38 1 5.1705 -1.4409 0.0004 39 1 3.7922 -2.4918 -2.4545 40 1 3.6460 -0.9820 -3.3858 41 1 6.0230 -0.8633 -1.8650 42 1 6.6195 -3.3346 -5.3342 43 1 7.8163 -2.8683 -6.5702 44 1 7.8090 -5.3032 -6.3556 45 1 8.0381 -5.1787 -4.5946 46 1 9.9921 -4.1616 -6.7080 47 1 8.7172 -7.2435 -8.2705 48 1 11.4888 -3.8223 -4.7488 49 1 10.1681 -4.3209 -3.6643 50 1 10.1709 -1.9156 -5.5456 51 1 10.2271 -1.8751 -3.7644 52 1 1.6767 -1.7489 -1.2493 53 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340908832.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:16 Heat of formation + Delta-G solvation = -108.324536 kcal Electronic energy + Delta-G solvation = -29775.781239 eV Core-core repulsion = 25838.577728 eV Total energy + Delta-G solvation = -3937.203511 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.04442 -40.30641 -39.50465 -38.60198 -36.42152 -35.26790 -33.35638 -33.01324 -32.26233 -31.76599 -28.57657 -27.50019 -27.17705 -25.51451 -24.14429 -23.49463 -23.01839 -21.70680 -21.52663 -20.67473 -20.38902 -18.71887 -18.35925 -18.04205 -17.20303 -16.86216 -16.48159 -16.29033 -16.03838 -15.71314 -15.33219 -15.29319 -15.09406 -14.76883 -14.66647 -14.64616 -14.45137 -14.21720 -13.95097 -13.49848 -13.39671 -13.21728 -13.20338 -12.82614 -12.81173 -12.62323 -12.52473 -12.31370 -12.23030 -12.14415 -11.93392 -11.90439 -11.73721 -11.50918 -11.30869 -11.11026 -11.03024 -10.96922 -10.88001 -10.46128 -10.33686 -9.93807 -9.70082 -8.07607 -6.21656 0.30950 1.29531 1.41112 1.42297 1.51911 2.09886 2.43633 2.48650 3.18614 3.25792 3.59142 3.74517 3.81430 4.11171 4.12409 4.25236 4.27020 4.30518 4.33290 4.43459 4.49691 4.53040 4.55712 4.59637 4.70096 4.70238 4.76758 4.80386 4.83712 4.86879 4.94287 4.95223 5.04202 5.13307 5.14731 5.19041 5.20923 5.28868 5.33677 5.35811 5.38837 5.39721 5.45398 5.47797 5.54194 5.62645 5.65471 5.95711 6.01367 6.10899 6.28598 6.38035 6.69462 6.88394 6.92597 7.45986 8.96021 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018853 B = 0.002167 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.847530 B =12917.458985 C =13419.308277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.072 0.928 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.089 4.089 8 H 0.087 0.913 9 C 0.119 3.881 10 N -0.681 5.681 11 C 0.510 3.490 12 O -0.525 6.525 13 C 0.500 3.500 14 O -0.552 6.552 15 N -0.568 5.568 16 C 0.059 3.941 17 C -0.110 4.110 18 C 0.042 3.958 19 C -0.534 4.534 20 H 0.051 0.949 21 C 0.013 3.987 22 N -0.914 5.914 23 Si 0.952 3.048 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.269 1.269 27 C -0.113 4.113 28 C 0.111 3.889 29 C -0.104 4.104 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.419 0.581 42 H 0.149 0.851 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.022 0.978 46 H 0.002 0.998 47 H 0.261 0.739 48 H 0.072 0.928 49 H 0.045 0.955 50 H 0.077 0.923 51 H 0.095 0.905 52 H 0.064 0.936 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.830 15.292 16.139 27.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.090 0.910 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.157 4.157 7 C -0.107 4.107 8 H 0.105 0.895 9 C -0.003 4.003 10 N -0.334 5.334 11 C 0.292 3.708 12 O -0.404 6.404 13 C 0.282 3.718 14 O -0.432 6.432 15 N -0.299 5.299 16 C -0.061 4.061 17 C -0.149 4.149 18 C 0.023 3.977 19 C -0.572 4.572 20 H 0.069 0.931 21 C -0.186 4.186 22 N -0.553 5.553 23 Si 0.778 3.222 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.151 4.151 28 C -0.011 4.011 29 C -0.142 4.142 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.257 0.743 42 H 0.165 0.835 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.041 0.959 46 H 0.021 0.979 47 H 0.070 0.930 48 H 0.090 0.910 49 H 0.064 0.936 50 H 0.095 0.905 51 H 0.113 0.887 52 H 0.083 0.917 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.048 15.169 15.788 27.146 hybrid contribution 0.841 -1.143 -0.215 1.435 sum -15.208 14.026 15.573 25.894 Atomic orbital electron populations 1.21823 0.94805 1.01871 1.01968 1.21101 0.95720 0.99571 0.94328 0.90955 1.21607 0.95172 1.00643 0.97725 1.21513 0.95894 1.00862 0.97230 1.21641 1.00236 0.99487 0.94297 1.21367 0.96869 1.00047 0.92448 0.89467 1.21731 0.77182 1.01741 0.99693 1.45786 1.08861 1.53811 1.24954 1.20075 0.88087 0.79746 0.82903 1.90346 1.69421 1.41934 1.38663 1.20192 0.88749 0.81191 0.81620 1.90679 1.70653 1.40810 1.41027 1.48241 1.07967 1.44368 1.29332 1.23212 1.01727 0.90642 0.90544 1.21673 0.98828 0.94432 0.99968 1.18662 0.92298 0.93893 0.92820 1.21553 1.23400 0.97925 1.14301 0.93080 1.25720 0.95461 1.02222 0.95193 1.69981 1.31389 1.36074 1.17885 0.85645 0.78944 0.80396 0.77189 1.20397 1.20880 1.19391 1.21857 1.00143 0.93889 0.99220 1.21854 0.78049 0.98014 1.03178 1.21566 0.92775 1.01406 0.98502 0.92841 0.92474 0.92317 0.91544 0.92296 0.91820 0.91526 0.92137 0.92272 0.91330 0.90593 0.74329 0.83464 0.92507 0.90608 0.95884 0.97950 0.92982 0.90953 0.93637 0.90457 0.88706 0.91710 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.19 71.98 0.66 -0.65 16 2 C -0.09 -0.85 2.72 -10.79 -0.03 -0.88 16 3 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 4 C -0.11 -1.14 5.20 30.60 0.16 -0.98 16 5 C -0.12 -1.28 5.92 30.60 0.18 -1.10 16 6 C -0.12 -1.54 5.08 30.59 0.16 -1.38 16 7 C -0.09 -1.08 2.23 -10.78 -0.02 -1.11 16 8 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 9 C 0.12 2.07 5.06 86.38 0.44 2.51 16 10 N -0.68 -14.93 5.28 -464.41 -2.45 -17.38 16 11 C 0.51 15.43 7.80 87.27 0.68 16.11 16 12 O -0.52 -18.15 13.02 -3.26 -0.04 -18.19 16 13 C 0.50 17.14 7.76 87.27 0.68 17.81 16 14 O -0.55 -19.40 15.91 -3.23 -0.05 -19.45 16 15 N -0.57 -21.21 2.98 -821.29 -2.45 -23.65 16 16 C 0.06 2.41 6.20 86.22 0.53 2.95 16 17 C -0.11 -5.33 5.14 30.53 0.16 -5.18 16 18 C 0.04 2.09 2.07 -11.51 -0.02 2.07 16 19 C -0.53 -29.45 8.56 25.60 0.22 -29.23 16 20 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 21 C 0.01 0.71 5.30 84.66 0.45 1.16 16 22 N -0.91 -52.54 11.30 21.45 0.24 -52.30 16 23 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 C -0.11 -4.66 5.30 30.67 0.16 -4.50 16 28 C 0.11 3.97 6.43 86.36 0.56 4.53 16 29 C -0.10 -1.12 4.49 30.61 0.14 -0.99 16 30 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 0.83 7.18 -2.39 -0.02 0.82 16 39 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.42 8.05 7.14 -92.71 -0.66 7.39 16 42 H 0.15 5.94 3.78 -82.37 -0.31 5.63 16 43 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 44 H 0.08 4.12 6.03 -2.39 -0.01 4.11 16 45 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 47 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 48 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 49 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 51 H 0.09 3.16 7.01 -2.38 -0.02 3.14 16 52 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 53 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -62.92 403.85 2.29 -60.64 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -0.08 Total: 23.36 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 5.09 Total: 1.15 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -4.65 Total: -93.33 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -0.09 Total: -37.65 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -62.92 2.29 -60.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340908832.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.687 kcal (2) G-P(sol) polarization free energy of solvation -62.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds