Wall clock time and date at job start Tue Mar 31 2020 20:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46725 * 2 1 4 4 C 1.53002 * 109.47050 * 240.00170 * 2 1 3 5 5 C 1.52994 * 109.47160 * 299.99438 * 4 2 1 6 6 C 1.52997 * 109.47577 * 300.00203 * 5 4 2 7 7 C 1.53002 * 109.47042 * 59.99724 * 6 5 4 8 8 H 1.08998 * 109.47324 * 60.00015 * 7 6 5 9 9 C 1.53000 * 109.47368 * 180.02562 * 7 6 5 10 10 N 1.46501 * 109.46981 * 295.00336 * 9 7 6 11 11 C 1.34775 * 120.00092 * 180.02562 * 10 9 7 12 12 O 1.21346 * 119.99705 * 359.97438 * 11 10 9 13 13 C 1.49456 * 120.00180 * 179.97438 * 11 10 9 14 14 O 1.21352 * 119.99668 * 353.21174 * 13 11 10 15 15 N 1.34771 * 119.99859 * 173.20819 * 13 11 10 16 16 C 1.46927 * 120.63248 * 2.00515 * 15 13 11 17 17 C 1.52758 * 109.00532 * 233.57835 * 16 15 13 18 18 C 1.53040 * 109.38506 * 305.58732 * 17 16 15 19 19 C 1.50704 * 109.45766 * 181.26062 * 18 17 16 20 20 H 1.07998 * 120.00047 * 245.78179 * 19 18 17 21 21 C 1.37871 * 119.99788 * 65.78856 * 19 18 17 22 22 N 1.31512 * 120.00337 * 355.45551 * 21 19 18 23 23 Si 1.86808 * 119.99765 * 175.46395 * 21 19 18 24 24 H 1.48497 * 109.47316 * 94.99501 * 23 21 19 25 25 H 1.48500 * 109.46872 * 214.99648 * 23 21 19 26 26 H 1.48504 * 109.47035 * 334.98920 * 23 21 19 27 27 C 1.53037 * 109.53617 * 61.24212 * 18 17 16 28 28 C 1.46927 * 120.62624 * 182.27707 * 15 13 11 29 29 C 1.52997 * 109.47557 * 120.00069 * 2 1 3 30 30 H 1.09005 * 109.46725 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47505 * 299.99740 * 1 2 3 32 32 H 1.08995 * 109.47619 * 60.00192 * 1 2 3 33 33 H 1.08996 * 109.47232 * 59.99941 * 4 2 1 34 34 H 1.09004 * 109.46689 * 179.97438 * 4 2 1 35 35 H 1.09004 * 109.47110 * 60.00515 * 5 4 2 36 36 H 1.08996 * 109.47310 * 180.02562 * 5 4 2 37 37 H 1.08994 * 109.47898 * 179.97438 * 6 5 4 38 38 H 1.09004 * 109.47155 * 300.00284 * 6 5 4 39 39 H 1.08998 * 109.46924 * 54.99809 * 9 7 6 40 40 H 1.09001 * 109.47260 * 175.00170 * 9 7 6 41 41 H 0.96998 * 120.00004 * 359.97438 * 10 9 7 42 42 H 1.08994 * 109.58463 * 353.41466 * 16 15 13 43 43 H 1.09001 * 109.58623 * 113.84067 * 16 15 13 44 44 H 1.08995 * 109.56273 * 185.55102 * 17 16 15 45 45 H 1.08997 * 109.38852 * 65.51489 * 17 16 15 46 46 H 1.08995 * 109.44941 * 301.22421 * 18 17 16 47 47 H 0.97001 * 120.00114 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.49837 * 178.68457 * 27 18 17 49 49 H 1.08998 * 109.52883 * 58.60113 * 27 18 17 50 50 H 1.09007 * 109.58808 * 246.15755 * 28 15 13 51 51 H 1.08998 * 109.58961 * 6.44552 * 28 15 13 52 52 H 1.08996 * 109.47646 * 180.02562 * 29 2 1 53 53 H 1.09006 * 109.46905 * 299.99997 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1638 1.2492 8 1 0.4401 -2.1637 1.2492 9 6 2.0406 -2.8846 2.4985 10 7 1.4570 -4.2269 2.5604 11 6 1.7656 -5.0494 3.5825 12 8 2.5272 -4.6782 4.4512 13 6 1.1698 -6.4186 3.6461 14 8 0.3159 -6.7463 2.8485 15 7 1.5810 -7.2893 4.5890 16 6 2.5822 -6.8928 5.5886 17 6 3.7279 -7.9030 5.5730 18 6 3.1652 -9.3123 5.7713 19 6 4.2970 -10.3072 5.7872 20 1 4.3826 -11.0405 4.9989 21 6 5.2232 -10.2814 6.8081 22 7 5.1717 -9.3341 7.7189 23 14 6.5516 -11.5918 6.8975 24 1 7.7861 -11.0908 6.2416 25 1 6.8399 -11.9081 8.3195 26 1 6.0845 -12.8183 6.2025 27 6 2.2081 -9.6472 4.6251 28 6 1.0409 -8.6550 4.6333 29 6 2.0401 -0.7212 1.2492 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 0.4401 -2.1638 -1.2493 36 1 1.8938 -2.6776 -2.1390 37 1 1.6765 -3.9125 0.0002 38 1 3.1302 -2.8849 -0.0001 39 1 3.1269 -2.9625 2.4545 40 1 1.7522 -2.3217 3.3862 41 1 0.8479 -4.5235 1.8662 42 1 2.9671 -5.9021 5.3471 43 1 2.1249 -6.8783 6.5779 44 1 4.4273 -7.6741 6.3770 45 1 4.2448 -7.8492 4.6149 46 1 2.6278 -9.3586 6.7184 47 1 5.8236 -9.3157 8.4370 48 1 1.8257 -10.6597 4.7544 49 1 2.7383 -9.5771 3.6753 50 1 0.4554 -8.7871 5.5432 51 1 0.4072 -8.8258 3.7630 52 1 3.1300 -0.7208 1.2494 53 1 1.6767 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340908836.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:23 Heat of formation + Delta-G solvation = -104.849782 kcal Electronic energy + Delta-G solvation = -29943.600936 eV Core-core repulsion = 26006.548102 eV Total energy + Delta-G solvation = -3937.052835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.04949 -40.46738 -39.61143 -38.59854 -36.41307 -35.24447 -33.06989 -32.81599 -32.21496 -31.78999 -28.55912 -27.62137 -27.40306 -25.51722 -24.15087 -23.55683 -23.21443 -22.07702 -21.67829 -20.49380 -19.47351 -18.73822 -18.38899 -18.03744 -17.19493 -16.85018 -16.54952 -16.47107 -16.09910 -15.72109 -15.34542 -15.30162 -15.06462 -14.77954 -14.65340 -14.58558 -14.50393 -14.18912 -13.94919 -13.53850 -13.38196 -13.22592 -13.20738 -12.87956 -12.82467 -12.53470 -12.44895 -12.38632 -12.28825 -12.15764 -11.94036 -11.87079 -11.81250 -11.49971 -11.15663 -11.06698 -10.99530 -10.90272 -10.83158 -10.49544 -10.33184 -9.93267 -9.69970 -8.08861 -6.21528 0.31049 1.29672 1.40699 1.42321 1.52418 2.10011 2.43654 2.48756 3.18697 3.25845 3.61774 3.75659 3.79883 4.10873 4.17499 4.26796 4.27037 4.30627 4.34080 4.48104 4.48729 4.51443 4.54777 4.57062 4.64700 4.71491 4.74714 4.80035 4.85737 4.87860 4.93918 5.00349 5.06664 5.13555 5.17048 5.19165 5.19632 5.30520 5.31206 5.35499 5.38281 5.41352 5.48340 5.49412 5.55051 5.62316 5.68300 5.95080 6.00960 6.08414 6.28453 6.37661 6.69512 6.88979 6.92767 7.46034 8.96138 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020828 B = 0.002178 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.009188 B =12854.660665 C =13243.644561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 H 0.075 0.925 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.090 4.090 8 H 0.089 0.911 9 C 0.119 3.881 10 N -0.681 5.681 11 C 0.511 3.489 12 O -0.525 6.525 13 C 0.500 3.500 14 O -0.552 6.552 15 N -0.568 5.568 16 C 0.059 3.941 17 C -0.107 4.107 18 C 0.042 3.958 19 C -0.533 4.533 20 H 0.051 0.949 21 C 0.013 3.987 22 N -0.914 5.914 23 Si 0.952 3.048 24 H -0.279 1.279 25 H -0.283 1.283 26 H -0.269 1.269 27 C -0.113 4.113 28 C 0.111 3.889 29 C -0.105 4.105 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.418 0.582 42 H 0.150 0.850 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.024 0.976 46 H 0.004 0.996 47 H 0.261 0.739 48 H 0.072 0.928 49 H 0.045 0.955 50 H 0.077 0.923 51 H 0.095 0.905 52 H 0.065 0.935 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.561 19.751 -16.375 27.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 H 0.093 0.907 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.109 4.109 8 H 0.107 0.893 9 C -0.004 4.004 10 N -0.334 5.334 11 C 0.292 3.708 12 O -0.404 6.404 13 C 0.283 3.717 14 O -0.431 6.431 15 N -0.299 5.299 16 C -0.062 4.062 17 C -0.146 4.146 18 C 0.023 3.977 19 C -0.572 4.572 20 H 0.069 0.931 21 C -0.186 4.186 22 N -0.554 5.554 23 Si 0.777 3.223 24 H -0.205 1.205 25 H -0.208 1.208 26 H -0.193 1.193 27 C -0.151 4.151 28 C -0.011 4.011 29 C -0.143 4.143 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.256 0.744 42 H 0.166 0.834 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.043 0.957 46 H 0.022 0.978 47 H 0.070 0.930 48 H 0.091 0.909 49 H 0.064 0.936 50 H 0.095 0.905 51 H 0.113 0.887 52 H 0.084 0.916 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.384 19.906 -16.019 27.219 hybrid contribution 0.775 -1.191 0.280 1.448 sum -8.609 18.715 -15.739 25.925 Atomic orbital electron populations 1.21952 0.95068 1.02138 1.01755 1.21068 0.96112 0.99195 0.94320 0.90701 1.21571 1.00486 0.95411 0.97736 1.21547 1.01245 0.95706 0.97158 1.21632 1.00899 0.98762 0.94297 1.21399 1.01635 0.95437 0.92423 0.89296 1.21739 0.98496 0.80426 0.99721 1.45785 1.47423 1.15231 1.24944 1.20073 0.81669 0.86154 0.82896 1.90338 1.36367 1.75015 1.38633 1.20194 0.83314 0.86608 0.81627 1.90682 1.32827 1.78609 1.41028 1.48224 1.40163 1.12497 1.29004 1.23214 0.88809 1.03743 0.90415 1.21653 0.97011 0.96201 0.99752 1.18667 0.93303 0.92802 0.92893 1.21535 1.11160 1.15882 1.08579 0.93105 1.25721 0.99770 0.97548 0.95536 1.70012 1.37084 1.33414 1.14872 0.85645 0.79448 0.79902 0.77257 1.20486 1.20839 1.19325 1.21860 0.95883 0.98190 0.99190 1.21852 0.96287 0.79755 1.03192 1.21525 1.00939 0.93340 0.98516 0.92157 0.92684 0.92551 0.91573 0.92213 0.91242 0.91977 0.92330 0.92127 0.91319 0.90640 0.74352 0.83382 0.92529 0.91286 0.95674 0.97755 0.92997 0.90937 0.93614 0.90518 0.88695 0.91595 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.50 71.98 0.61 -0.76 16 2 C -0.09 -0.83 3.19 -10.79 -0.03 -0.87 16 3 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 4 C -0.11 -1.12 5.45 30.59 0.17 -0.95 16 5 C -0.12 -1.29 5.65 30.59 0.17 -1.12 16 6 C -0.12 -1.51 5.08 30.59 0.16 -1.36 16 7 C -0.09 -1.10 1.95 -10.79 -0.02 -1.12 16 8 H 0.09 1.01 6.43 -2.39 -0.02 0.99 16 9 C 0.12 2.05 5.06 86.38 0.44 2.49 16 10 N -0.68 -14.83 5.27 -464.41 -2.45 -17.28 16 11 C 0.51 15.35 7.80 87.27 0.68 16.03 16 12 O -0.52 -18.05 13.02 -3.23 -0.04 -18.09 16 13 C 0.50 17.06 7.76 87.27 0.68 17.74 16 14 O -0.55 -19.31 15.91 -3.25 -0.05 -19.36 16 15 N -0.57 -21.11 2.98 -821.31 -2.45 -23.56 16 16 C 0.06 2.38 6.21 86.22 0.54 2.91 16 17 C -0.11 -5.17 5.19 30.53 0.16 -5.01 16 18 C 0.04 2.09 2.00 -11.51 -0.02 2.07 16 19 C -0.53 -29.42 8.49 25.60 0.22 -29.21 16 20 H 0.05 2.77 7.75 -2.91 -0.02 2.74 16 21 C 0.01 0.73 5.36 84.65 0.45 1.18 16 22 N -0.91 -52.74 11.57 21.44 0.25 -52.49 16 23 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 27 C -0.11 -4.66 5.30 30.67 0.16 -4.50 16 28 C 0.11 3.97 6.43 86.36 0.56 4.52 16 29 C -0.11 -1.11 4.73 30.59 0.14 -0.97 16 30 H 0.06 0.57 4.81 -2.38 -0.01 0.56 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.07 0.71 6.43 -2.38 -0.02 0.70 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 0.82 7.18 -2.39 -0.02 0.80 16 38 H 0.06 0.85 8.14 -2.38 -0.02 0.84 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.42 8.00 7.14 -92.71 -0.66 7.34 16 42 H 0.15 5.94 3.77 -82.90 -0.31 5.62 16 43 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.07 3.73 6.34 -2.39 -0.02 3.72 16 45 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 47 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 48 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 49 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 51 H 0.09 3.15 7.01 -2.39 -0.02 3.14 16 52 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 53 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 Total: -1.00 -63.04 397.36 2.27 -60.77 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -0.07 Total: 23.10 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 5.05 Total: 1.08 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -4.65 Total: -93.33 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -0.09 Total: -37.45 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -63.04 2.27 -60.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340908836.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.077 kcal (2) G-P(sol) polarization free energy of solvation -63.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds