Wall clock time and date at job start Tue Mar 31 2020 20:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47057 * 2 1 4 4 C 1.53005 * 109.46702 * 119.99468 * 2 1 3 5 5 C 1.52993 * 109.46967 * 59.99990 * 4 2 1 6 6 C 1.53003 * 109.47313 * 60.00264 * 5 4 2 7 7 C 1.53002 * 109.46930 * 299.99418 * 6 5 4 8 8 H 1.09002 * 109.47315 * 300.00730 * 7 6 5 9 9 C 1.52996 * 109.47484 * 179.97438 * 7 6 5 10 10 N 1.46509 * 109.46859 * 65.00125 * 9 7 6 11 11 C 1.34774 * 119.99861 * 180.02562 * 10 9 7 12 12 O 1.21346 * 119.99908 * 0.02562 * 11 10 9 13 13 C 1.49447 * 119.99801 * 180.02562 * 11 10 9 14 14 O 1.21351 * 120.00300 * 6.74271 * 13 11 10 15 15 N 1.34781 * 119.99783 * 186.74562 * 13 11 10 16 16 C 1.46924 * 120.63136 * 8.42593 * 15 13 11 17 17 C 1.53622 * 108.54350 * 126.36898 * 16 15 13 18 18 C 1.53045 * 109.23990 * 54.85523 * 17 16 15 19 19 C 1.50704 * 109.45762 * 178.49178 * 18 17 16 20 20 H 1.07997 * 119.99964 * 120.07065 * 19 18 17 21 21 C 1.37881 * 119.99640 * 300.06378 * 19 18 17 22 22 N 1.31512 * 120.00120 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99385 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47222 * 60.00715 * 23 21 19 25 25 H 1.48504 * 109.46647 * 180.02562 * 23 21 19 26 26 H 1.48491 * 109.47397 * 300.00140 * 23 21 19 27 27 C 1.53037 * 109.53772 * 298.50937 * 18 17 16 28 28 C 1.46927 * 120.62580 * 188.70743 * 15 13 11 29 29 C 1.52995 * 109.47096 * 239.99410 * 2 1 3 30 30 H 1.08995 * 109.47460 * 300.00908 * 1 2 3 31 31 H 1.08999 * 109.47057 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46897 * 60.00558 * 1 2 3 33 33 H 1.09003 * 109.46892 * 180.02562 * 4 2 1 34 34 H 1.08995 * 109.46856 * 299.99993 * 4 2 1 35 35 H 1.09001 * 109.46848 * 179.97438 * 5 4 2 36 36 H 1.08996 * 109.47662 * 299.99481 * 5 4 2 37 37 H 1.08997 * 109.47257 * 59.99827 * 6 5 4 38 38 H 1.08996 * 109.47232 * 179.97438 * 6 5 4 39 39 H 1.08990 * 109.47503 * 185.00114 * 9 7 6 40 40 H 1.09003 * 109.47221 * 305.00418 * 9 7 6 41 41 H 0.96997 * 119.99826 * 0.02562 * 10 9 7 42 42 H 1.08997 * 109.58214 * 246.20374 * 16 15 13 43 43 H 1.08998 * 109.58424 * 6.62521 * 16 15 13 44 44 H 1.08998 * 109.63602 * 294.86840 * 17 16 15 45 45 H 1.08998 * 109.43320 * 174.72098 * 17 16 15 46 46 H 1.09004 * 109.46156 * 58.53227 * 18 17 16 47 47 H 0.97002 * 119.99699 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.49912 * 301.41234 * 27 18 17 49 49 H 1.09003 * 109.49525 * 181.32027 * 27 18 17 50 50 H 1.08999 * 109.59099 * 353.36687 * 28 15 13 51 51 H 1.09002 * 109.58817 * 113.79869 * 28 15 13 52 52 H 1.09001 * 109.47221 * 60.00230 * 29 2 1 53 53 H 1.08997 * 109.46909 * 180.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.5299 -2.1636 1.2494 6 6 2.0400 -2.8850 0.0003 7 6 1.5300 -2.1639 -1.2490 8 1 0.4400 -2.1638 -1.2490 9 6 2.0405 -2.8849 -2.4982 10 7 1.4568 -4.2272 -2.5601 11 6 1.7662 -5.0501 -3.5816 12 8 2.5286 -4.6793 -4.4498 13 6 1.1704 -6.4192 -3.6451 14 8 0.3163 -6.7468 -2.8477 15 7 1.5816 -7.2901 -4.5879 16 6 2.7373 -6.9799 -5.4405 17 6 3.7379 -8.1419 -5.3488 18 6 3.0267 -9.4492 -5.7059 19 6 4.0128 -10.5876 -5.6536 20 1 3.8501 -11.4122 -4.9754 21 6 5.1227 -10.5764 -6.4717 22 7 5.3210 -9.5721 -7.2972 23 14 6.3453 -11.9873 -6.4062 24 1 5.6562 -13.2560 -6.7539 25 1 7.4419 -11.7373 -7.3760 26 1 6.9100 -12.0898 -5.0367 27 6 1.8970 -9.7068 -4.7062 28 6 0.8789 -8.5650 -4.7868 29 6 2.0400 -0.7214 -1.2491 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8901 33 1 3.1300 -0.7208 1.2496 34 1 1.6766 -0.2072 2.1392 35 1 1.8935 -2.6775 2.1393 36 1 0.4399 -2.1636 1.2495 37 1 3.1300 -2.8851 0.0004 38 1 1.6770 -3.9128 0.0006 39 1 1.7522 -2.3220 -3.3859 40 1 3.1269 -2.9627 -2.4543 41 1 0.8477 -4.5237 -1.8659 42 1 2.4079 -6.8582 -6.4723 43 1 3.2100 -6.0606 -5.0948 44 1 4.1315 -8.2073 -4.3345 45 1 4.5572 -7.9710 -6.0472 46 1 2.6120 -9.3741 -6.7112 47 1 6.1016 -9.5645 -7.8730 48 1 2.3080 -9.7574 -3.6979 49 1 1.4061 -10.6497 -4.9472 50 1 0.1252 -8.6920 -4.0097 51 1 0.4011 -8.5699 -5.7665 52 1 1.6767 -0.2076 -2.1392 53 1 3.1300 -0.7217 -1.2489 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340908838.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:27 Heat of formation + Delta-G solvation = -108.050556 kcal Electronic energy + Delta-G solvation = -29928.093565 eV Core-core repulsion = 25990.901935 eV Total energy + Delta-G solvation = -3937.191631 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.01474 -40.46815 -39.60203 -38.57083 -36.39231 -35.26417 -33.06567 -32.81258 -32.21553 -31.73493 -28.54783 -27.62310 -27.39825 -25.50675 -24.16407 -23.55490 -23.21521 -22.07600 -21.62510 -20.50321 -19.47168 -18.74918 -18.34555 -18.03289 -17.21249 -16.82134 -16.53943 -16.47753 -16.11016 -15.64153 -15.38759 -15.30371 -15.00832 -14.78281 -14.64675 -14.59385 -14.46420 -14.17678 -13.95270 -13.54200 -13.38034 -13.22277 -13.16577 -12.87228 -12.80270 -12.53079 -12.45593 -12.40202 -12.32373 -12.14915 -11.96431 -11.87347 -11.81319 -11.51576 -11.16433 -11.05812 -11.01361 -10.90080 -10.83726 -10.45657 -10.35295 -10.05090 -9.68441 -8.07334 -6.21430 0.31244 1.30881 1.42476 1.43097 1.50724 2.08968 2.43905 2.48881 3.18892 3.28382 3.61633 3.75338 3.79717 4.10564 4.17188 4.26691 4.27204 4.30216 4.32875 4.47776 4.49662 4.51139 4.54650 4.56084 4.64467 4.71238 4.73178 4.80113 4.85641 4.87528 4.95239 5.00062 5.06341 5.14132 5.16632 5.18675 5.19064 5.28045 5.30863 5.32725 5.38095 5.41092 5.46774 5.48651 5.52848 5.62616 5.67926 5.95910 6.01597 6.10281 6.27866 6.38088 6.67710 6.88421 6.92168 7.46250 8.96076 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020870 B = 0.002171 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.304685 B =12892.658724 C =13269.866494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 H 0.075 0.925 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.090 4.090 8 H 0.089 0.911 9 C 0.119 3.881 10 N -0.683 5.683 11 C 0.509 3.491 12 O -0.528 6.528 13 C 0.500 3.500 14 O -0.551 6.551 15 N -0.571 5.571 16 C 0.082 3.918 17 C -0.113 4.113 18 C 0.043 3.957 19 C -0.535 4.535 20 H 0.051 0.949 21 C 0.014 3.986 22 N -0.914 5.914 23 Si 0.952 3.048 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.275 1.275 27 C -0.113 4.113 28 C 0.112 3.888 29 C -0.105 4.105 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.418 0.582 42 H 0.060 0.940 43 H 0.129 0.871 44 H 0.024 0.976 45 H 0.076 0.924 46 H 0.003 0.997 47 H 0.261 0.739 48 H 0.044 0.956 49 H 0.072 0.928 50 H 0.095 0.905 51 H 0.079 0.921 52 H 0.070 0.930 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.508 20.353 15.261 27.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 H 0.093 0.907 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.109 4.109 8 H 0.107 0.893 9 C -0.003 4.003 10 N -0.336 5.336 11 C 0.290 3.710 12 O -0.407 6.407 13 C 0.283 3.717 14 O -0.430 6.430 15 N -0.303 5.303 16 C -0.039 4.039 17 C -0.151 4.151 18 C 0.024 3.976 19 C -0.573 4.573 20 H 0.069 0.931 21 C -0.185 4.185 22 N -0.553 5.553 23 Si 0.778 3.222 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.200 1.200 27 C -0.151 4.151 28 C -0.010 4.010 29 C -0.143 4.143 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.256 0.744 42 H 0.078 0.922 43 H 0.146 0.854 44 H 0.043 0.957 45 H 0.095 0.905 46 H 0.022 0.978 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.091 0.909 50 H 0.113 0.887 51 H 0.097 0.903 52 H 0.089 0.911 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.286 20.514 14.924 27.014 hybrid contribution 0.726 -1.216 -0.118 1.421 sum -8.560 19.297 14.806 25.785 Atomic orbital electron populations 1.21953 0.95072 1.02128 1.01761 1.21069 0.96110 0.99201 0.94310 0.90675 1.21571 1.00490 0.95393 0.97744 1.21548 1.01241 0.95723 0.97148 1.21630 1.00897 0.98749 0.94310 1.21398 1.01617 0.95450 0.92422 0.89327 1.21722 0.98452 0.80467 0.99663 1.45791 1.47552 1.15298 1.24972 1.20049 0.81792 0.86224 0.82957 1.90532 1.35719 1.75459 1.38973 1.20259 0.83398 0.86485 0.81562 1.90680 1.34004 1.78539 1.39821 1.48207 1.30321 1.17998 1.33744 1.22915 0.85606 1.01350 0.93985 1.21880 0.98789 0.95100 0.99378 1.18651 0.92469 0.93161 0.93303 1.21524 1.07945 1.06210 1.21591 0.93073 1.25710 0.99582 0.98189 0.95036 1.69969 1.29064 1.31840 1.24437 0.85714 0.78686 0.80066 0.77779 1.19672 1.20973 1.19996 1.21854 0.96553 0.97185 0.99516 1.21856 0.94897 0.81711 1.02522 1.21525 1.00937 0.93325 0.98519 0.92538 0.92178 0.92679 0.92202 0.91559 0.91986 0.91250 0.92130 0.92373 0.90738 0.91366 0.74422 0.92209 0.85394 0.95697 0.90522 0.97844 0.92960 0.93682 0.90947 0.88710 0.90301 0.91100 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.50 71.98 0.61 -0.78 16 2 C -0.09 -0.84 3.20 -10.79 -0.03 -0.87 16 3 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 4 C -0.11 -1.13 5.45 30.59 0.17 -0.97 16 5 C -0.12 -1.31 5.65 30.59 0.17 -1.14 16 6 C -0.12 -1.54 5.08 30.60 0.16 -1.39 16 7 C -0.09 -1.12 1.95 -10.79 -0.02 -1.14 16 8 H 0.09 1.03 6.43 -2.39 -0.02 1.01 16 9 C 0.12 2.10 5.06 86.38 0.44 2.53 16 10 N -0.68 -15.10 5.28 -464.42 -2.45 -17.55 16 11 C 0.51 15.41 7.74 87.27 0.68 16.09 16 12 O -0.53 -18.28 13.18 -3.23 -0.04 -18.32 16 13 C 0.50 17.18 7.73 87.27 0.67 17.85 16 14 O -0.55 -19.49 15.93 -3.25 -0.05 -19.54 16 15 N -0.57 -21.24 2.97 -819.64 -2.43 -23.67 16 16 C 0.08 3.34 6.01 86.51 0.52 3.86 16 17 C -0.11 -5.41 5.17 30.82 0.16 -5.25 16 18 C 0.04 2.12 2.06 -11.51 -0.02 2.10 16 19 C -0.53 -29.35 8.56 25.60 0.22 -29.13 16 20 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 21 C 0.01 0.75 5.30 84.66 0.45 1.20 16 22 N -0.91 -52.30 11.30 21.45 0.24 -52.05 16 23 Si 0.95 43.62 29.54 68.60 2.03 45.65 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 27 C -0.11 -4.64 5.30 30.67 0.16 -4.48 16 28 C 0.11 3.97 6.44 86.36 0.56 4.53 16 29 C -0.11 -1.12 4.73 30.59 0.14 -0.98 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.58 4.81 -2.39 -0.01 0.57 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.72 6.43 -2.39 -0.02 0.71 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 0.83 7.18 -2.39 -0.02 0.82 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 40 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.42 8.16 7.15 -92.71 -0.66 7.50 16 42 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.13 5.12 4.30 -48.53 -0.21 4.91 16 44 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.08 4.13 6.03 -2.39 -0.01 4.11 16 46 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 47 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 48 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 50 H 0.09 3.14 7.01 -2.39 -0.02 3.12 16 51 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 52 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 53 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -62.57 397.25 2.36 -60.21 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.04 Total: 23.24 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 5.03 Total: 2.03 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -4.64 Total: -93.27 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -0.09 Total: -37.86 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -62.57 2.36 -60.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340908838.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.838 kcal (2) G-P(sol) polarization free energy of solvation -62.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds