Wall clock time and date at job start Tue Mar 31 2020 19:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47073 * 2 1 4 4 C 1.52996 * 109.47077 * 239.99451 * 2 1 3 5 5 C 1.53002 * 109.47077 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.46680 * 60.00244 * 5 4 2 7 7 C 1.52996 * 109.47166 * 299.99701 * 6 5 4 8 8 C 1.52995 * 109.47249 * 60.00352 * 7 6 5 9 9 H 1.09006 * 109.46772 * 60.00030 * 8 7 6 10 10 C 1.53001 * 109.47473 * 179.97438 * 8 7 6 11 11 C 1.52995 * 109.47136 * 295.00688 * 10 8 7 12 12 N 1.46503 * 109.46987 * 179.97438 * 11 10 8 13 13 C 1.34777 * 119.99979 * 179.97438 * 12 11 10 14 14 O 1.21347 * 120.00030 * 359.97438 * 13 12 11 15 15 C 1.49450 * 119.99896 * 179.97438 * 13 12 11 16 16 O 1.21344 * 120.00000 * 4.97407 * 15 13 12 17 17 N 1.34778 * 119.99840 * 184.97173 * 15 13 12 18 18 C 1.46502 * 120.00026 * 174.28731 * 17 15 13 19 19 C 1.52996 * 109.47289 * 183.79908 * 18 17 15 20 20 C 1.50704 * 115.54961 * 306.40952 * 19 18 17 21 21 H 1.07992 * 119.99994 * 145.15069 * 20 19 18 22 22 C 1.37879 * 119.99773 * 325.15661 * 20 19 18 23 23 N 1.31516 * 120.00215 * 349.98771 * 22 20 19 24 24 Si 1.86806 * 120.00028 * 169.99128 * 22 20 19 25 25 H 1.48508 * 109.46698 * 89.99791 * 24 22 20 26 26 H 1.48499 * 109.47191 * 209.99620 * 24 22 20 27 27 H 1.48497 * 109.47101 * 330.00145 * 24 22 20 28 28 C 1.53004 * 117.50178 * 160.74214 * 19 18 17 29 29 C 1.52995 * 117.50428 * 92.08097 * 19 18 17 30 30 H 1.09005 * 109.47157 * 300.00454 * 1 2 3 31 31 H 1.08996 * 109.47468 * 60.00066 * 1 2 3 32 32 H 1.09001 * 109.47467 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46769 * 60.00012 * 4 2 1 34 34 H 1.08999 * 109.47292 * 300.00572 * 4 2 1 35 35 H 1.08997 * 109.46755 * 299.99924 * 5 4 2 36 36 H 1.08998 * 109.46924 * 180.02562 * 5 4 2 37 37 H 1.09008 * 109.46514 * 179.97438 * 6 5 4 38 38 H 1.08995 * 109.47320 * 60.00526 * 6 5 4 39 39 H 1.08999 * 109.47292 * 299.99970 * 7 6 5 40 40 H 1.09005 * 109.46769 * 180.02562 * 7 6 5 41 41 H 1.08997 * 109.47240 * 174.99999 * 10 8 7 42 42 H 1.09005 * 109.46630 * 55.00175 * 10 8 7 43 43 H 1.08997 * 109.47618 * 59.99543 * 11 10 8 44 44 H 1.09005 * 109.46942 * 299.99296 * 11 10 8 45 45 H 0.96994 * 120.00006 * 359.97438 * 12 11 10 46 46 H 0.96998 * 119.99964 * 354.00983 * 17 15 13 47 47 H 1.09008 * 109.46636 * 303.79453 * 18 17 15 48 48 H 1.09000 * 109.47120 * 63.79633 * 18 17 15 49 49 H 0.97002 * 120.00422 * 185.03614 * 23 22 20 50 50 H 1.08998 * 117.49480 * 359.97438 * 28 19 18 51 51 H 1.08994 * 117.49647 * 145.01685 * 28 19 18 52 52 H 1.08997 * 117.50195 * 214.98253 * 29 19 18 53 53 H 1.09007 * 117.49768 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5700 -0.7208 -1.2495 6 6 4.0804 -1.4416 -0.0002 7 6 3.5705 -0.7203 1.2490 8 6 2.0405 -0.7208 1.2493 9 1 1.6775 -1.7486 1.2496 10 6 1.5305 0.0000 2.4988 11 6 1.9358 -0.7901 3.7446 12 7 1.4480 -0.0996 4.9410 13 6 1.6886 -0.6161 6.1624 14 8 2.3089 -1.6534 6.2711 15 6 1.1913 0.0886 7.3830 16 8 0.4947 1.0760 7.2720 17 7 1.5167 -0.3725 8.6069 18 6 1.1358 0.3864 9.8007 19 6 1.7031 -0.3007 11.0444 20 6 1.3589 -1.7602 11.1946 21 1 2.0746 -2.4418 11.6299 22 6 0.1302 -2.2253 10.7761 23 7 -0.8119 -1.3752 10.4306 24 14 -0.1964 -4.0631 10.6999 25 1 -0.7434 -4.5229 12.0018 26 1 -1.1780 -4.3472 9.6224 27 1 1.0726 -4.7799 10.4153 28 6 1.8175 0.5332 12.3221 29 6 3.0772 0.1554 11.5389 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6766 -0.2075 -2.1392 34 1 1.6766 -1.7490 -1.2491 35 1 3.9329 0.3070 -1.2498 36 1 3.9333 -1.2343 -2.1396 37 1 5.1705 -1.4416 -0.0007 38 1 3.7175 -2.4694 0.0001 39 1 3.9335 0.3075 1.2487 40 1 3.9345 -1.2336 2.1390 41 1 0.4441 0.0779 2.4554 42 1 1.9648 0.9988 2.5448 43 1 3.0222 -0.8680 3.7880 44 1 1.5015 -1.7889 3.6986 45 1 0.9518 0.7293 4.8542 46 1 1.9994 -1.2089 8.6975 47 1 1.5352 1.3983 9.7307 48 1 0.0490 0.4289 9.8729 49 1 -1.6986 -1.6985 10.2064 50 1 1.4889 1.5714 12.2765 51 1 1.6441 0.0260 13.2712 52 1 3.7321 -0.6000 11.9731 53 1 3.5774 0.9449 10.9778 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346279103.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:49 Heat of formation + Delta-G solvation = -100.744075 kcal Electronic energy + Delta-G solvation = -29331.787852 eV Core-core repulsion = 25394.913054 eV Total energy + Delta-G solvation = -3936.874798 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.58487 -40.23851 -39.54051 -38.43622 -36.62701 -34.88118 -34.16099 -33.82130 -33.08973 -29.66795 -28.40818 -27.51557 -27.02410 -25.36527 -23.81277 -22.93757 -22.17803 -21.83957 -21.25003 -21.03701 -20.54120 -19.50154 -18.07773 -17.81382 -17.13310 -16.69378 -16.63090 -16.17966 -16.05738 -15.75135 -15.48236 -15.31958 -15.18692 -14.88139 -14.70701 -14.60265 -14.34205 -14.07163 -13.62556 -13.43033 -13.25736 -12.95718 -12.91160 -12.73540 -12.70138 -12.68235 -12.59706 -12.32676 -12.32268 -12.23525 -12.05256 -11.77688 -11.66964 -11.43862 -11.26777 -11.10979 -10.86368 -10.77399 -10.69615 -10.53085 -10.27385 -10.17452 -9.80717 -8.06092 -6.20578 0.44959 1.38402 1.44531 1.47790 1.51763 2.24600 2.39067 2.78685 3.05146 3.56382 3.64605 3.69538 3.76218 3.83379 4.05121 4.10925 4.22178 4.33424 4.36292 4.44158 4.49696 4.52643 4.59739 4.65821 4.68839 4.70606 4.74398 4.75528 4.86608 4.95057 4.97303 5.01345 5.02604 5.07356 5.13330 5.19195 5.22970 5.24906 5.27212 5.35218 5.35683 5.42269 5.48614 5.50110 5.53612 5.56597 5.59606 5.68259 5.89872 6.05707 6.34650 6.54474 6.79234 6.86671 7.12055 7.42209 8.88387 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017133 B = 0.002194 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.894405 B =12757.604265 C =13138.572738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 H 0.072 0.928 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.120 4.120 8 C -0.073 4.073 9 H 0.069 0.931 10 C -0.122 4.122 11 C 0.115 3.885 12 N -0.688 5.688 13 C 0.510 3.490 14 O -0.546 6.546 15 C 0.490 3.510 16 O -0.562 6.562 17 N -0.655 5.655 18 C 0.169 3.831 19 C 0.002 3.998 20 C -0.506 4.506 21 H 0.058 0.942 22 C 0.037 3.963 23 N -0.892 5.892 24 Si 0.940 3.060 25 H -0.276 1.276 26 H -0.290 1.290 27 H -0.267 1.267 28 C -0.190 4.190 29 C -0.187 4.187 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.419 0.581 46 H 0.410 0.590 47 H 0.040 0.960 48 H 0.084 0.916 49 H 0.260 0.740 50 H 0.081 0.919 51 H 0.076 0.924 52 H 0.082 0.918 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.095 3.488 -23.607 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.100 4.100 3 H 0.090 0.910 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.158 4.158 7 C -0.157 4.157 8 C -0.092 4.092 9 H 0.087 0.913 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.341 5.341 13 C 0.291 3.709 14 O -0.424 6.424 15 C 0.270 3.730 16 O -0.443 6.443 17 N -0.303 5.303 18 C 0.046 3.954 19 C 0.001 3.999 20 C -0.544 4.544 21 H 0.076 0.924 22 C -0.165 4.165 23 N -0.529 5.529 24 Si 0.767 3.233 25 H -0.201 1.201 26 H -0.216 1.216 27 H -0.192 1.192 28 C -0.229 4.229 29 C -0.224 4.224 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.256 0.744 46 H 0.246 0.754 47 H 0.058 0.942 48 H 0.102 0.898 49 H 0.070 0.930 50 H 0.099 0.901 51 H 0.095 0.905 52 H 0.101 0.899 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.899 3.443 -23.729 24.693 hybrid contribution -0.470 -1.038 0.480 1.236 sum 5.429 2.406 -23.249 23.996 Atomic orbital electron populations 1.21928 0.95145 1.01848 1.02059 1.21097 0.95468 0.99539 0.93896 0.90958 1.21584 0.95484 1.00568 0.97416 1.21531 0.95649 1.00776 0.97642 1.21530 1.00332 0.99298 0.94604 1.21675 0.94909 1.01121 0.97999 1.21072 0.95395 0.99537 0.93215 0.91276 1.21902 1.02542 0.99651 0.91818 1.21708 0.99887 0.96336 0.82798 1.45760 1.55844 1.28051 1.04480 1.20145 0.80426 0.84958 0.85416 1.90729 1.40696 1.23853 1.87131 1.20281 0.82049 0.85288 0.85380 1.90659 1.38548 1.27960 1.87130 1.45688 1.54136 1.25723 1.04775 1.20921 1.01759 0.90677 0.82026 1.19251 0.95204 0.94191 0.91228 1.20688 1.00630 0.91965 1.41086 0.92428 1.25520 0.96040 1.00739 0.94166 1.69958 1.02597 1.34756 1.45602 0.85809 0.78082 0.81857 0.77569 1.20141 1.21606 1.19191 1.22932 1.03015 0.99584 0.97339 1.22977 0.91084 1.03022 1.05345 0.92270 0.92274 0.92966 0.91491 0.92294 0.91917 0.91709 0.91893 0.92348 0.91595 0.92353 0.90017 0.90088 0.90909 0.91877 0.74395 0.75399 0.94151 0.89789 0.93043 0.90097 0.90501 0.89921 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.85 71.98 0.64 -1.11 16 2 C -0.08 -0.93 2.25 -10.79 -0.02 -0.95 16 3 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.11 -1.21 5.20 30.59 0.16 -1.06 16 5 C -0.12 -1.27 5.92 30.59 0.18 -1.09 16 6 C -0.12 -1.47 5.92 30.59 0.18 -1.29 16 7 C -0.12 -1.61 4.96 30.59 0.15 -1.45 16 8 C -0.07 -0.96 1.72 -10.80 -0.02 -0.98 16 9 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 10 C -0.12 -1.77 4.58 30.59 0.14 -1.63 16 11 C 0.11 2.43 5.43 86.38 0.47 2.90 16 12 N -0.69 -18.51 5.55 -464.41 -2.58 -21.09 16 13 C 0.51 18.49 7.89 87.27 0.69 19.18 16 14 O -0.55 -22.18 16.49 -3.24 -0.05 -22.23 16 15 C 0.49 20.51 7.88 87.27 0.69 21.20 16 16 O -0.56 -24.95 16.50 -3.23 -0.05 -25.00 16 17 N -0.66 -29.36 5.27 -464.41 -2.45 -31.80 16 18 C 0.17 7.96 4.73 86.38 0.41 8.37 16 19 C 0.00 0.09 2.00 -52.93 -0.11 -0.02 16 20 C -0.51 -26.07 8.27 25.60 0.21 -25.86 16 21 H 0.06 2.96 7.83 -2.91 -0.02 2.94 16 22 C 0.04 1.95 5.13 84.65 0.43 2.38 16 23 N -0.89 -48.71 10.72 21.45 0.23 -48.48 16 24 Si 0.94 42.57 29.55 68.60 2.03 44.60 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 26 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 28 C -0.19 -8.04 9.96 30.62 0.30 -7.73 16 29 C -0.19 -7.46 9.92 30.62 0.30 -7.16 16 30 H 0.06 0.69 6.32 -2.38 -0.02 0.68 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.89 6.57 -2.38 -0.02 0.88 16 41 H 0.08 1.14 6.18 -2.39 -0.01 1.12 16 42 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.07 1.58 6.56 -2.39 -0.02 1.56 16 44 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 45 H 0.42 10.06 7.95 -92.71 -0.74 9.32 16 46 H 0.41 18.80 7.40 -92.71 -0.69 18.11 16 47 H 0.04 1.79 8.08 -2.38 -0.02 1.77 16 48 H 0.08 4.53 6.03 -2.39 -0.01 4.51 16 49 H 0.26 13.88 8.32 -92.71 -0.77 13.11 16 50 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 51 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 52 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 53 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 Total: -1.00 -59.93 415.68 1.42 -58.52 By element: Atomic # 1 Polarization: 42.29 SS G_CDS: -0.52 Total: 41.77 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 4.81 Total: 3.71 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -4.79 Total: -101.37 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -0.11 Total: -47.23 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -59.93 1.42 -58.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346279103.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.224 kcal (2) G-P(sol) polarization free energy of solvation -59.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds