Wall clock time and date at job start Tue Mar 31 2020 19:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.47097 * 2 1 4 4 C 1.52997 * 109.47099 * 120.00421 * 2 1 3 5 5 C 1.53002 * 109.46947 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46723 * 299.99221 * 5 4 2 7 7 C 1.52997 * 109.46773 * 60.00673 * 6 5 4 8 8 C 1.53000 * 109.46639 * 240.00066 * 2 1 3 9 9 H 1.08999 * 109.47533 * 299.99352 * 8 2 1 10 10 C 1.52998 * 109.47569 * 60.00570 * 8 2 1 11 11 C 1.52992 * 109.47522 * 185.00031 * 10 8 2 12 12 N 1.46500 * 109.47339 * 179.97438 * 11 10 8 13 13 C 1.34780 * 119.99963 * 179.97438 * 12 11 10 14 14 O 1.21346 * 120.00076 * 0.02562 * 13 12 11 15 15 C 1.49451 * 119.99724 * 180.02562 * 13 12 11 16 16 O 1.21344 * 120.00264 * 357.62242 * 15 13 12 17 17 N 1.34774 * 119.99816 * 177.62735 * 15 13 12 18 18 C 1.46501 * 120.00176 * 185.10959 * 17 15 13 19 19 C 1.53002 * 109.47185 * 184.39849 * 18 17 15 20 20 C 1.50693 * 115.55343 * 64.92624 * 19 18 17 21 21 H 1.07996 * 120.00158 * 266.87229 * 20 19 18 22 22 C 1.37882 * 119.99894 * 86.87147 * 20 19 18 23 23 N 1.31516 * 120.00018 * 180.90781 * 22 20 19 24 24 Si 1.86799 * 119.99807 * 0.90912 * 22 20 19 25 25 H 1.48497 * 109.47304 * 84.92919 * 24 22 20 26 26 H 1.48506 * 109.46873 * 204.92729 * 24 22 20 27 27 H 1.48500 * 109.47397 * 324.92575 * 24 22 20 28 28 C 1.52997 * 117.49428 * 279.25412 * 19 18 17 29 29 C 1.53007 * 117.49324 * 210.59954 * 19 18 17 30 30 H 1.08999 * 109.46629 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46846 * 299.99822 * 1 2 3 32 32 H 1.08993 * 109.46814 * 59.99938 * 1 2 3 33 33 H 1.09001 * 109.47073 * 299.99618 * 4 2 1 34 34 H 1.08994 * 109.47490 * 59.99820 * 4 2 1 35 35 H 1.08999 * 109.46933 * 179.97438 * 5 4 2 36 36 H 1.08994 * 109.47368 * 59.99506 * 5 4 2 37 37 H 1.08994 * 109.47432 * 300.00246 * 6 5 4 38 38 H 1.09005 * 109.46723 * 180.02562 * 6 5 4 39 39 H 1.08998 * 109.47843 * 59.99973 * 7 6 5 40 40 H 1.09001 * 109.47073 * 179.97438 * 7 6 5 41 41 H 1.09008 * 109.46569 * 304.99206 * 10 8 2 42 42 H 1.08998 * 109.47506 * 64.99391 * 10 8 2 43 43 H 1.09002 * 109.46911 * 299.99398 * 11 10 8 44 44 H 1.09001 * 109.47468 * 59.98745 * 11 10 8 45 45 H 0.97000 * 120.00299 * 359.97438 * 12 11 10 46 46 H 0.97007 * 120.00465 * 5.10251 * 17 15 13 47 47 H 1.09004 * 109.47154 * 304.39332 * 18 17 15 48 48 H 1.08998 * 109.47095 * 64.39503 * 18 17 15 49 49 H 0.97002 * 119.99876 * 180.02562 * 23 22 20 50 50 H 1.08996 * 117.50486 * 0.02562 * 28 19 18 51 51 H 1.09006 * 117.49498 * 145.02300 * 28 19 18 52 52 H 1.09000 * 117.49408 * 214.97454 * 29 19 18 53 53 H 1.08990 * 117.50450 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5701 -0.7207 1.2495 6 6 4.0805 -1.4417 0.0002 7 6 3.5705 -0.7204 -1.2490 8 6 2.0400 -0.7213 -1.2493 9 1 1.6767 -1.7489 -1.2493 10 6 1.5301 0.0000 -2.4985 11 6 1.9347 -0.7901 -3.7446 12 7 1.4459 -0.0998 -4.9407 13 6 1.6867 -0.6158 -6.1623 14 8 2.3079 -1.6525 -6.2714 15 6 1.1885 0.0888 -7.3825 16 8 0.5305 1.1023 -7.2718 17 7 1.4701 -0.4015 -8.6059 18 6 1.0790 0.3470 -9.8030 19 6 1.4143 -0.4737 -11.0499 20 6 0.6482 -1.7619 -11.2056 21 1 1.0623 -2.6854 -10.8288 22 6 -0.5815 -1.7617 -11.8292 23 7 -1.2582 -2.8830 -11.9493 24 14 -1.2864 -0.1686 -12.5036 25 1 -0.7517 0.0708 -13.8681 26 1 -2.7669 -0.2682 -12.5625 27 1 -0.9010 0.9580 -11.6163 28 6 2.8622 -0.4486 -11.5437 29 6 1.7741 0.2929 -12.3243 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6768 -0.2075 2.1392 34 1 1.6768 -1.7489 1.2492 35 1 3.9334 -1.2342 2.1396 36 1 3.9331 0.3070 1.2497 37 1 3.7176 -2.4695 0.0000 38 1 5.1706 -1.4417 0.0006 39 1 3.9335 0.3073 -1.2489 40 1 3.9345 -1.2337 -2.1390 41 1 0.4437 0.0782 -2.4549 42 1 1.9647 0.9985 -2.5445 43 1 3.0210 -0.8684 -3.7883 44 1 1.5002 -1.7887 -3.6986 45 1 0.9491 0.7287 -4.8536 46 1 1.9319 -1.2501 -8.6939 47 1 0.0071 0.5433 -9.7747 48 1 1.6208 1.2923 -9.8335 49 1 -2.1232 -2.8828 -12.3883 50 1 3.5759 0.1521 -10.9800 51 1 3.2605 -1.3640 -11.9816 52 1 1.4570 -0.1350 -13.2754 53 1 1.7715 1.3816 -12.2745 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346279104.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:53 Heat of formation + Delta-G solvation = -103.272377 kcal Electronic energy + Delta-G solvation = -28971.683037 eV Core-core repulsion = 25034.698604 eV Total energy + Delta-G solvation = -3936.984433 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.68618 -40.26632 -39.65552 -38.68790 -36.66450 -35.09407 -34.22677 -33.83512 -33.09233 -29.72105 -28.81448 -27.56476 -27.01387 -25.40623 -23.88692 -23.31385 -22.17942 -21.85126 -21.33677 -21.00982 -20.53850 -19.50850 -18.29446 -17.88118 -17.21567 -16.88474 -16.71336 -16.30188 -16.08776 -15.76652 -15.43605 -15.38018 -15.16954 -14.92175 -14.76944 -14.65494 -14.61226 -14.28314 -14.06004 -13.74940 -13.25852 -13.10190 -12.96023 -12.79498 -12.69971 -12.64847 -12.60658 -12.32311 -12.23132 -12.17173 -12.00201 -11.77262 -11.66564 -11.61298 -11.26467 -11.01941 -10.92019 -10.77037 -10.72097 -10.65076 -10.36565 -10.27559 -10.06047 -8.29944 -6.38036 0.35665 1.34184 1.37131 1.40489 1.50160 2.15336 2.36479 2.65342 3.04298 3.22509 3.51534 3.65160 3.76663 3.83691 3.97682 4.05680 4.11411 4.33126 4.33973 4.36677 4.39501 4.44765 4.47167 4.53317 4.60348 4.66274 4.69624 4.73196 4.74877 4.87067 4.87567 4.95533 5.01657 5.02814 5.08880 5.13839 5.18749 5.22814 5.24285 5.25238 5.31176 5.35804 5.36148 5.42741 5.49459 5.50468 5.54038 5.67712 5.68804 5.97707 6.27325 6.41591 6.71199 6.75654 6.96808 7.32476 8.85046 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022495 B = 0.001945 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.402830 B =14391.362082 C =14741.355936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 H 0.072 0.928 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.121 4.121 7 C -0.119 4.119 8 C -0.073 4.073 9 H 0.069 0.931 10 C -0.122 4.122 11 C 0.115 3.885 12 N -0.687 5.687 13 C 0.511 3.489 14 O -0.544 6.544 15 C 0.498 3.502 16 O -0.553 6.553 17 N -0.672 5.672 18 C 0.159 3.841 19 C -0.048 4.048 20 C -0.483 4.483 21 H 0.037 0.963 22 C 0.020 3.980 23 N -0.946 5.946 24 Si 0.937 3.063 25 H -0.261 1.261 26 H -0.304 1.304 27 H -0.239 1.239 28 C -0.155 4.155 29 C -0.185 4.185 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.420 0.580 46 H 0.415 0.585 47 H 0.049 0.951 48 H 0.076 0.924 49 H 0.265 0.735 50 H 0.106 0.894 51 H 0.082 0.918 52 H 0.079 0.921 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.922 9.624 26.038 29.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.100 4.100 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.158 4.158 7 C -0.157 4.157 8 C -0.093 4.093 9 H 0.087 0.913 10 C -0.159 4.159 11 C -0.008 4.008 12 N -0.340 5.340 13 C 0.291 3.709 14 O -0.422 6.422 15 C 0.279 3.721 16 O -0.433 6.433 17 N -0.322 5.322 18 C 0.036 3.964 19 C -0.049 4.049 20 C -0.520 4.520 21 H 0.056 0.944 22 C -0.178 4.178 23 N -0.586 5.586 24 Si 0.762 3.238 25 H -0.185 1.185 26 H -0.231 1.231 27 H -0.162 1.162 28 C -0.192 4.192 29 C -0.223 4.223 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.257 0.743 46 H 0.251 0.749 47 H 0.068 0.932 48 H 0.094 0.906 49 H 0.074 0.926 50 H 0.124 0.876 51 H 0.101 0.899 52 H 0.098 0.902 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.765 9.523 25.974 29.020 hybrid contribution -0.819 -0.168 -0.737 1.114 sum 7.946 9.354 25.238 28.064 Atomic orbital electron populations 1.21930 0.95155 1.01843 1.02065 1.21099 0.95457 0.99538 0.93912 0.90934 1.21586 0.95488 1.00565 0.97465 1.21533 0.95649 1.00774 0.97666 1.21533 1.00328 0.99303 0.94645 1.21684 0.94904 1.01117 0.97961 1.21083 0.95380 0.99546 0.93245 0.91279 1.21902 1.02575 0.99669 0.91803 1.21713 0.99952 0.96358 0.82747 1.45764 1.55686 1.28096 1.04487 1.20031 0.80653 0.84934 0.85301 1.90758 1.40611 1.23765 1.87028 1.20316 0.81316 0.85256 0.85254 1.90693 1.39491 1.26018 1.87068 1.45752 1.56615 1.25140 1.04677 1.21166 0.99265 0.93228 0.82747 1.19474 0.97325 0.96058 0.92054 1.20352 1.02429 0.92137 1.37111 0.94447 1.25842 0.96986 0.99201 0.95759 1.70042 1.14582 1.28926 1.45026 0.85936 0.76107 0.81332 0.80408 1.18544 1.23115 1.16179 1.22898 0.91067 1.01745 1.03468 1.23050 1.04886 0.98645 0.95683 0.92989 0.92376 0.92156 0.91575 0.92329 0.91803 0.91908 0.92375 0.91909 0.91558 0.92251 0.89981 0.90014 0.90807 0.91788 0.74279 0.74901 0.93220 0.90623 0.92640 0.87554 0.89893 0.90223 0.87529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.85 71.99 0.64 -0.93 16 2 C -0.08 -0.83 2.25 -10.79 -0.02 -0.85 16 3 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 4 C -0.11 -1.12 5.20 30.59 0.16 -0.96 16 5 C -0.12 -1.16 5.92 30.60 0.18 -0.98 16 6 C -0.12 -1.35 5.92 30.59 0.18 -1.17 16 7 C -0.12 -1.42 4.96 30.61 0.15 -1.26 16 8 C -0.07 -0.85 1.72 -10.78 -0.02 -0.87 16 9 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 10 C -0.12 -1.50 4.58 30.59 0.14 -1.36 16 11 C 0.11 2.11 5.43 86.38 0.47 2.58 16 12 N -0.69 -15.94 5.55 -464.42 -2.58 -18.51 16 13 C 0.51 16.17 7.89 87.27 0.69 16.86 16 14 O -0.54 -19.88 16.48 -3.24 -0.05 -19.94 16 15 C 0.50 17.88 7.88 87.27 0.69 18.57 16 16 O -0.55 -21.07 16.47 -3.23 -0.05 -21.12 16 17 N -0.67 -25.76 5.45 -464.41 -2.53 -28.29 16 18 C 0.16 6.34 5.23 86.38 0.45 6.79 16 19 C -0.05 -2.05 0.85 -52.93 -0.04 -2.09 16 20 C -0.48 -26.21 9.29 25.60 0.24 -25.97 16 21 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 22 C 0.02 1.13 5.47 84.66 0.46 1.60 16 23 N -0.95 -58.57 13.96 21.45 0.30 -58.27 16 24 Si 0.94 43.74 24.76 68.60 1.70 45.44 16 25 H -0.26 -11.43 7.01 99.48 0.70 -10.73 16 26 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 27 H -0.24 -10.23 5.98 99.48 0.60 -9.63 16 28 C -0.15 -5.51 9.96 30.62 0.30 -5.20 16 29 C -0.18 -6.89 7.59 30.62 0.23 -6.66 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.62 6.32 -2.39 -0.02 0.60 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 0.80 6.57 -2.39 -0.02 0.79 16 41 H 0.08 0.97 6.17 -2.38 -0.01 0.95 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 1.40 6.57 -2.39 -0.02 1.39 16 44 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.42 8.44 7.95 -92.71 -0.74 7.70 16 46 H 0.41 16.24 7.92 -92.70 -0.73 15.50 16 47 H 0.05 2.20 6.74 -2.38 -0.02 2.19 16 48 H 0.08 2.62 8.09 -2.39 -0.02 2.60 16 49 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 50 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 51 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 52 H 0.08 3.19 7.07 -2.39 -0.02 3.17 16 53 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -67.22 411.80 0.99 -66.23 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: -0.69 Total: 36.38 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 4.90 Total: -1.92 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -4.81 Total: -105.07 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -0.11 Total: -41.06 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.70 Total: 45.44 kcal Total: -67.22 0.99 -66.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346279104.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.042 kcal (2) G-P(sol) polarization free energy of solvation -67.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds