Wall clock time and date at job start Tue Mar 31 2020 20:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47360 * 2 1 4 4 C 1.53001 * 109.47179 * 239.99589 * 2 1 3 5 5 C 1.52999 * 109.47187 * 300.00057 * 4 2 1 6 6 C 1.52998 * 109.47036 * 299.99958 * 5 4 2 7 7 H 1.09006 * 109.47183 * 299.99658 * 6 5 4 8 8 N 1.46498 * 109.47051 * 180.02562 * 6 5 4 9 9 C 1.34779 * 120.00305 * 84.99627 * 8 6 5 10 10 O 1.21345 * 119.99883 * 0.02562 * 9 8 6 11 11 C 1.49454 * 120.00209 * 179.97438 * 9 8 6 12 12 O 1.21349 * 119.99694 * 6.75531 * 11 9 8 13 13 N 1.34779 * 120.00249 * 186.74789 * 11 9 8 14 14 C 1.46922 * 120.63196 * 179.04326 * 13 11 9 15 15 C 1.53191 * 108.77544 * 233.63056 * 14 13 11 16 16 C 1.53040 * 109.31516 * 305.36872 * 15 14 13 17 17 C 1.50697 * 109.46008 * 181.38901 * 16 15 14 18 18 H 1.07994 * 120.00088 * 354.45798 * 17 16 15 19 19 C 1.37878 * 119.99711 * 174.47035 * 17 16 15 20 20 N 1.31505 * 120.00137 * 1.06147 * 19 17 16 21 21 Si 1.86807 * 119.99837 * 181.05638 * 19 17 16 22 22 H 1.48492 * 109.47141 * 265.00823 * 21 19 17 23 23 H 1.48500 * 109.46634 * 145.00469 * 21 19 17 24 24 H 1.48499 * 109.47056 * 25.00627 * 21 19 17 25 25 C 1.53041 * 109.53987 * 61.35942 * 16 15 14 26 26 C 1.46931 * 120.62608 * 359.06520 * 13 11 9 27 27 C 1.52994 * 109.47510 * 59.99782 * 6 5 4 28 28 C 1.52999 * 109.47149 * 300.00149 * 27 6 5 29 29 H 1.08995 * 109.47262 * 299.99728 * 28 27 6 30 30 C 1.53001 * 109.47187 * 179.97438 * 28 27 6 31 31 H 1.09000 * 109.46894 * 299.99762 * 1 2 3 32 32 H 1.08991 * 109.46780 * 60.00352 * 1 2 3 33 33 H 1.09001 * 109.46590 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46666 * 60.00036 * 4 2 1 35 35 H 1.09004 * 109.47312 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.47186 * 179.97438 * 5 4 2 37 37 H 1.08995 * 109.47262 * 59.99791 * 5 4 2 38 38 H 0.97000 * 120.00107 * 264.99444 * 8 6 5 39 39 H 1.08999 * 109.58629 * 113.84468 * 14 13 11 40 40 H 1.09003 * 109.58406 * 353.42165 * 14 13 11 41 41 H 1.08998 * 109.49861 * 185.40953 * 15 14 13 42 42 H 1.09002 * 109.49325 * 65.31986 * 15 14 13 43 43 H 1.09001 * 109.45590 * 301.35972 * 16 15 14 44 44 H 0.97010 * 119.99973 * 180.02562 * 20 19 17 45 45 H 1.09002 * 109.49519 * 58.59036 * 25 16 15 46 46 H 1.08993 * 109.49433 * 178.68568 * 25 16 15 47 47 H 1.08991 * 109.58391 * 246.15534 * 26 13 11 48 48 H 1.08996 * 109.58634 * 6.58228 * 26 13 11 49 49 H 1.09006 * 109.46998 * 59.99764 * 27 6 5 50 50 H 1.09000 * 109.47370 * 179.97438 * 27 6 5 51 51 H 1.09005 * 109.47018 * 60.00277 * 30 28 27 52 52 H 1.08997 * 109.46942 * 179.97438 * 30 28 27 53 53 H 1.09004 * 109.47312 * 300.00403 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -2.1638 -1.2491 6 6 2.0400 -2.8850 0.0002 7 1 3.1301 -2.8850 0.0001 8 7 1.5522 -4.2663 -0.0001 9 6 2.2294 -5.2201 -0.6695 10 8 3.2435 -4.9347 -1.2717 11 6 1.7321 -6.6295 -0.6693 12 8 0.6572 -6.8934 -0.1717 13 7 2.4772 -7.6072 -1.2218 14 6 2.0113 -9.0006 -1.2106 15 6 3.1042 -9.8811 -0.5966 16 6 4.4155 -9.6628 -1.3548 17 6 5.4846 -10.5528 -0.7752 18 1 5.2779 -11.1415 0.1063 19 6 6.7269 -10.6153 -1.3702 20 7 6.9854 -9.8825 -2.4311 21 14 8.0427 -11.7408 -0.6692 22 1 8.9147 -10.9690 0.2523 23 1 8.8613 -12.2953 -1.7772 24 1 7.3981 -12.8527 0.0746 25 6 4.8444 -8.1995 -1.2250 26 6 3.7713 -7.3000 -1.8463 27 6 1.5301 -2.1637 1.2494 28 6 2.0401 -0.7212 1.2493 29 1 3.1301 -0.7212 1.2493 30 6 1.5297 0.0003 2.4982 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5137 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7210 -1.2494 36 1 1.8930 -2.6776 -2.1393 37 1 0.4401 -2.1639 -1.2491 38 1 0.7418 -4.4946 0.4816 39 1 1.8097 -9.3266 -2.2310 40 1 1.1022 -9.0770 -0.6141 41 1 2.8115 -10.9284 -0.6698 42 1 3.2409 -9.6135 0.4512 43 1 4.2712 -9.9067 -2.4073 44 1 7.8593 -9.9267 -2.8500 45 1 4.9648 -7.9478 -0.1713 46 1 5.7903 -8.0502 -1.7456 47 1 3.7132 -7.4874 -2.9184 48 1 4.0234 -6.2545 -1.6691 49 1 0.4401 -2.1637 1.2494 50 1 1.8931 -2.6778 2.1394 51 1 1.8928 -0.5134 3.3884 52 1 1.8934 1.0278 2.4983 53 1 0.4396 0.0002 2.4979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346493447.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:25 Heat of formation + Delta-G solvation = -101.184806 kcal Electronic energy + Delta-G solvation = -30371.237229 eV Core-core repulsion = 26434.343319 eV Total energy + Delta-G solvation = -3936.893910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.12914 -40.71670 -39.47600 -38.59404 -36.15841 -35.20103 -33.22383 -33.04228 -31.78593 -31.62876 -28.58103 -28.22427 -26.71955 -25.98236 -24.26473 -23.89905 -23.02237 -22.18593 -21.57154 -20.59753 -19.39366 -18.62535 -18.34416 -18.05587 -17.15211 -16.88973 -16.60274 -16.46215 -16.07132 -15.89098 -15.49017 -15.33133 -14.84934 -14.78941 -14.63458 -14.53004 -14.26695 -13.98201 -13.83085 -13.50549 -13.39445 -13.24154 -13.09102 -12.82609 -12.78570 -12.73252 -12.54002 -12.38178 -12.30860 -12.16913 -11.99696 -11.94247 -11.64020 -11.51101 -11.22527 -11.13488 -11.04792 -11.03326 -10.97332 -10.49090 -10.28497 -9.91804 -9.70623 -8.09706 -6.22103 0.30567 1.28066 1.40383 1.41870 1.51856 2.09235 2.43192 2.46364 3.18732 3.23467 3.65150 3.73020 3.88748 4.08204 4.09898 4.19218 4.26134 4.30642 4.33751 4.37177 4.47686 4.52512 4.54624 4.60732 4.64039 4.73777 4.76645 4.79663 4.85503 4.92823 4.96315 5.03508 5.06981 5.12622 5.16560 5.18324 5.19100 5.21029 5.30494 5.36040 5.37412 5.38070 5.46661 5.50855 5.56267 5.62142 5.69732 5.94611 6.01533 6.06993 6.28005 6.36763 6.69981 6.88758 6.93071 7.45585 8.96042 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.002395 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.922032 B =11686.022791 C =12225.906763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 H 0.079 0.921 4 C -0.109 4.109 5 C -0.127 4.127 6 C 0.142 3.858 7 H 0.075 0.925 8 N -0.680 5.680 9 C 0.513 3.487 10 O -0.524 6.524 11 C 0.499 3.501 12 O -0.551 6.551 13 N -0.568 5.568 14 C 0.111 3.889 15 C -0.113 4.113 16 C 0.042 3.958 17 C -0.533 4.533 18 H 0.051 0.949 19 C 0.013 3.987 20 N -0.916 5.916 21 Si 0.951 3.049 22 H -0.279 1.279 23 H -0.283 1.283 24 H -0.269 1.269 25 C -0.106 4.106 26 C 0.060 3.940 27 C -0.118 4.118 28 C -0.081 4.081 29 H 0.067 0.933 30 C -0.146 4.146 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.419 0.581 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.045 0.955 43 H 0.004 0.996 44 H 0.261 0.739 45 H 0.026 0.974 46 H 0.065 0.935 47 H 0.056 0.944 48 H 0.149 0.851 49 H 0.086 0.914 50 H 0.070 0.930 51 H 0.053 0.947 52 H 0.061 0.939 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.172 21.949 6.131 26.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.103 4.103 3 H 0.097 0.903 4 C -0.147 4.147 5 C -0.166 4.166 6 C 0.039 3.961 7 H 0.093 0.907 8 N -0.332 5.332 9 C 0.295 3.705 10 O -0.402 6.402 11 C 0.282 3.718 12 O -0.431 6.431 13 N -0.299 5.299 14 C -0.011 4.011 15 C -0.151 4.151 16 C 0.023 3.977 17 C -0.571 4.571 18 H 0.069 0.931 19 C -0.185 4.185 20 N -0.555 5.555 21 Si 0.777 3.223 22 H -0.205 1.205 23 H -0.209 1.209 24 H -0.193 1.193 25 C -0.145 4.145 26 C -0.060 4.060 27 C -0.155 4.155 28 C -0.100 4.100 29 H 0.085 0.915 30 C -0.203 4.203 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.256 0.744 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.023 0.977 44 H 0.070 0.930 45 H 0.045 0.955 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.165 0.835 49 H 0.105 0.895 50 H 0.089 0.911 51 H 0.072 0.928 52 H 0.080 0.920 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.882 22.037 5.843 26.692 hybrid contribution 0.903 -1.248 0.122 1.545 sum -12.979 20.789 5.965 25.223 Atomic orbital electron populations 1.21995 0.94701 1.02146 1.02110 1.21141 0.96471 0.99269 0.93395 0.90279 1.21516 1.00584 0.93901 0.98747 1.21916 1.01778 0.96311 0.96570 1.21266 0.99506 0.78303 0.97056 0.90704 1.45878 1.28687 1.08171 1.50469 1.20084 0.83849 0.86538 0.80060 1.90344 1.24770 1.81112 1.43997 1.20212 0.84954 0.86896 0.79705 1.90681 1.22024 1.83600 1.46801 1.48220 1.20412 1.07632 1.53620 1.21852 0.97940 0.79220 1.02068 1.21859 0.95387 0.98894 0.98959 1.18665 0.91842 0.92585 0.94595 1.21540 0.97857 1.25435 1.12282 0.93091 1.25717 1.00483 0.97058 0.95285 1.70021 1.22776 1.40991 1.21702 0.85647 0.79248 0.79348 0.78034 1.20453 1.20853 1.19309 1.21707 0.98328 0.96480 0.97951 1.23274 0.81019 1.05545 0.96206 1.21896 1.02402 0.95724 0.95511 1.21068 1.00197 0.93132 0.95640 0.91461 1.21854 1.01843 1.00301 0.96314 0.91634 0.92687 0.92354 0.90908 0.92268 0.93538 0.90336 0.74361 0.90533 0.88682 0.90951 0.93578 0.97737 0.93005 0.95532 0.91620 0.92550 0.83473 0.89547 0.91096 0.92754 0.92009 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.15 71.98 0.59 -0.84 16 2 C -0.08 -0.90 2.72 -10.79 -0.03 -0.93 16 3 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 4 C -0.11 -1.50 5.45 30.59 0.17 -1.34 16 5 C -0.13 -2.19 5.22 30.59 0.16 -2.03 16 6 C 0.14 2.63 2.45 44.99 0.11 2.74 16 7 H 0.07 1.70 7.58 -2.38 -0.02 1.68 16 8 N -0.68 -15.14 5.07 -443.87 -2.25 -17.39 16 9 C 0.51 15.57 7.77 87.27 0.68 16.25 16 10 O -0.52 -18.13 12.68 -3.23 -0.04 -18.17 16 11 C 0.50 17.14 7.76 87.27 0.68 17.81 16 12 O -0.55 -19.39 15.91 -3.24 -0.05 -19.44 16 13 N -0.57 -21.18 2.97 -820.49 -2.44 -23.62 16 14 C 0.11 3.98 6.43 86.36 0.56 4.54 16 15 C -0.11 -4.66 5.30 30.67 0.16 -4.50 16 16 C 0.04 2.09 1.97 -11.51 -0.02 2.07 16 17 C -0.53 -29.45 8.49 25.60 0.22 -29.23 16 18 H 0.05 2.78 7.75 -2.91 -0.02 2.75 16 19 C 0.01 0.75 5.33 84.66 0.45 1.20 16 20 N -0.92 -52.98 11.68 21.45 0.25 -52.73 16 21 Si 0.95 43.89 29.54 68.60 2.03 45.91 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 C -0.11 -5.10 5.20 30.67 0.16 -4.94 16 26 C 0.06 2.45 6.22 86.36 0.54 2.98 16 27 C -0.12 -1.52 4.40 30.59 0.13 -1.39 16 28 C -0.08 -0.92 2.50 -10.79 -0.03 -0.94 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 30 C -0.15 -1.32 8.84 71.98 0.64 -0.68 16 31 H 0.06 0.51 6.43 -2.39 -0.02 0.50 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.58 4.81 -2.39 -0.01 0.57 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.19 6.43 -2.39 -0.02 1.18 16 38 H 0.42 8.01 8.09 -92.71 -0.75 7.26 16 39 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.09 3.17 7.01 -2.39 -0.02 3.15 16 41 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.00 0.24 8.14 -2.39 -0.02 0.23 16 44 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 45 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.07 3.55 6.45 -2.39 -0.02 3.54 16 47 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 48 H 0.15 5.92 3.81 -81.44 -0.31 5.61 16 49 H 0.09 0.93 6.43 -2.38 -0.02 0.91 16 50 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 52 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 53 H 0.06 0.52 6.43 -2.38 -0.02 0.50 16 Total: -1.00 -63.41 395.01 2.50 -60.90 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -0.15 Total: 23.77 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 5.15 Total: 0.78 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -4.44 Total: -93.74 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.09 Total: -37.62 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -63.41 2.50 -60.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346493447.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.280 kcal (2) G-P(sol) polarization free energy of solvation -63.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds