Wall clock time and date at job start Tue Mar 31 2020 20:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47306 * 2 1 4 4 C 1.53000 * 109.46996 * 239.99243 * 2 1 3 5 5 C 1.53007 * 109.46927 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46873 * 60.00249 * 5 4 2 7 7 H 1.08998 * 109.47220 * 59.99781 * 6 5 4 8 8 N 1.46500 * 109.46814 * 180.02562 * 6 5 4 9 9 C 1.34776 * 119.99781 * 275.00024 * 8 6 5 10 10 O 1.21342 * 120.00577 * 0.02562 * 9 8 6 11 11 C 1.49455 * 119.99738 * 180.02562 * 9 8 6 12 12 O 1.21347 * 120.00032 * 6.39855 * 11 9 8 13 13 N 1.34774 * 120.00040 * 186.39900 * 11 9 8 14 14 C 1.46920 * 120.63432 * 186.80635 * 13 11 9 15 15 C 1.53621 * 108.54867 * 126.36673 * 14 13 11 16 16 C 1.53047 * 109.23854 * 54.85693 * 15 14 13 17 17 C 1.50696 * 109.45709 * 178.49559 * 16 15 14 18 18 H 1.07997 * 120.00481 * 120.07156 * 17 16 15 19 19 C 1.37885 * 120.00041 * 300.06340 * 17 16 15 20 20 N 1.31512 * 119.99845 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99713 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46917 * 89.99988 * 21 19 17 23 23 H 1.48502 * 109.46969 * 209.99413 * 21 19 17 24 24 H 1.48501 * 109.47383 * 329.99713 * 21 19 17 25 25 C 1.53036 * 109.53756 * 298.51128 * 16 15 14 26 26 C 1.46931 * 120.62724 * 7.08479 * 13 11 9 27 27 C 1.53000 * 109.47141 * 299.99621 * 6 5 4 28 28 C 1.52999 * 109.46996 * 60.00644 * 27 6 5 29 29 H 1.08998 * 109.47531 * 59.99737 * 28 27 6 30 30 C 1.52998 * 109.47217 * 179.97438 * 28 27 6 31 31 H 1.08998 * 109.47531 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47208 * 300.00726 * 1 2 3 33 33 H 1.09004 * 109.47007 * 60.00110 * 1 2 3 34 34 H 1.08996 * 109.46919 * 60.00695 * 4 2 1 35 35 H 1.08999 * 109.47222 * 299.99916 * 4 2 1 36 36 H 1.09000 * 109.46715 * 180.02562 * 5 4 2 37 37 H 1.09001 * 109.46686 * 300.00369 * 5 4 2 38 38 H 0.97004 * 120.00027 * 94.99819 * 8 6 5 39 39 H 1.09002 * 109.59209 * 246.20576 * 14 13 11 40 40 H 1.09009 * 109.58575 * 6.62351 * 14 13 11 41 41 H 1.09000 * 109.63409 * 294.86814 * 15 14 13 42 42 H 1.08994 * 109.46429 * 174.73841 * 15 14 13 43 43 H 1.08993 * 109.44885 * 58.52920 * 16 15 14 44 44 H 0.97005 * 119.99627 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.50212 * 301.41555 * 25 16 15 46 46 H 1.08997 * 109.52429 * 181.33205 * 25 16 15 47 47 H 1.08992 * 109.59132 * 353.37093 * 26 13 11 48 48 H 1.08998 * 109.58655 * 113.66111 * 26 13 11 49 49 H 1.09000 * 109.47711 * 300.00135 * 27 6 5 50 50 H 1.09004 * 109.46715 * 180.02562 * 27 6 5 51 51 H 1.09000 * 109.47644 * 179.97438 * 30 28 27 52 52 H 1.08993 * 109.47211 * 300.00036 * 30 28 27 53 53 H 1.09011 * 109.47276 * 60.00069 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7220 -1.2488 6 6 4.0794 -1.4435 0.0005 7 1 3.7157 -2.4710 0.0004 8 7 5.5444 -1.4435 0.0011 9 6 6.2186 -2.3995 -0.6683 10 8 5.6122 -3.2599 -1.2719 11 6 7.7131 -2.3998 -0.6672 12 8 8.3195 -1.6119 0.0286 13 7 8.3874 -3.2751 -1.4389 14 6 9.8487 -3.3900 -1.3392 15 6 10.2070 -4.8626 -1.0883 16 6 9.5823 -5.7277 -2.1855 17 6 9.9615 -7.1694 -1.9650 18 1 9.1932 -7.9121 -1.8092 19 6 11.2895 -7.5403 -1.9623 20 7 11.6204 -8.7985 -1.7703 21 14 12.6186 -6.2555 -2.2312 22 1 13.0312 -5.6886 -0.9221 23 1 13.7911 -6.8864 -2.8889 24 1 12.0903 -5.1702 -3.0962 25 6 8.0589 -5.5887 -2.1415 26 6 7.6756 -4.1282 -2.4003 27 6 3.5695 -0.7221 1.2497 28 6 2.0395 -0.7216 1.2494 29 1 1.6757 -1.7491 1.2493 30 6 1.5295 -0.0007 2.4988 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.6767 -0.2076 -2.1391 35 1 1.6766 -1.7491 -1.2490 36 1 3.9333 -1.2355 -2.1390 37 1 3.9337 0.3056 -1.2487 38 1 6.0292 -0.7554 0.4833 39 1 10.3061 -3.0531 -2.2694 40 1 10.2076 -2.7789 -0.5109 41 1 9.8220 -5.1730 -0.1170 42 1 11.2904 -4.9807 -1.1048 43 1 9.9489 -5.4005 -3.1584 44 1 12.5547 -9.0594 -1.7680 45 1 7.6940 -5.8922 -1.1603 46 1 7.6130 -6.2231 -2.9076 47 1 6.6003 -4.0046 -2.2725 48 1 7.9575 -3.8488 -3.4154 49 1 3.9332 0.3055 1.2499 50 1 3.9328 -1.2359 2.1397 51 1 0.4395 0.0001 2.4985 52 1 1.8924 -0.5150 3.3886 53 1 1.8931 1.0269 2.4994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346493449.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:33 Heat of formation + Delta-G solvation = -99.436901 kcal Electronic energy + Delta-G solvation = -30237.029676 eV Core-core repulsion = 26300.211562 eV Total energy + Delta-G solvation = -3936.818115 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.14236 -40.58290 -39.41299 -38.73891 -36.26035 -35.24221 -33.40827 -33.17569 -32.21339 -32.07709 -28.76411 -28.11653 -26.73079 -25.48428 -24.56360 -23.53605 -22.89641 -21.95171 -21.61331 -20.80453 -20.32303 -18.94756 -18.72245 -18.11988 -17.11590 -16.92157 -16.52136 -16.37524 -15.89726 -15.67403 -15.46713 -15.22815 -15.10620 -14.97337 -14.89579 -14.75543 -14.51697 -14.12278 -13.86982 -13.69379 -13.57425 -13.40550 -12.97970 -12.92551 -12.68498 -12.65522 -12.51215 -12.48829 -12.31329 -12.12108 -11.92391 -11.83676 -11.70028 -11.50828 -11.46036 -11.32206 -11.13357 -11.08144 -11.01920 -10.70503 -10.25682 -10.03027 -9.75212 -8.30006 -6.34206 0.27357 1.24003 1.30167 1.35912 1.46705 2.06835 2.32022 2.42253 3.04616 3.21868 3.64688 3.71694 3.90703 3.98046 4.03588 4.10206 4.13258 4.14956 4.25718 4.35650 4.41155 4.42212 4.51651 4.54315 4.61566 4.68523 4.72974 4.75002 4.79809 4.87993 4.92938 4.94146 4.97507 5.00968 5.03327 5.09387 5.14830 5.18359 5.22931 5.27648 5.28658 5.31931 5.41527 5.45262 5.55451 5.58050 5.65211 5.66431 5.70177 5.99349 6.23970 6.30835 6.66359 6.72766 6.90254 7.30939 8.86872 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.027206 B = 0.002284 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.926979 B =12255.690401 C =12546.864091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 H 0.076 0.924 4 C -0.108 4.108 5 C -0.126 4.126 6 C 0.142 3.858 7 H 0.077 0.923 8 N -0.681 5.681 9 C 0.515 3.485 10 O -0.521 6.521 11 C 0.501 3.499 12 O -0.549 6.549 13 N -0.571 5.571 14 C 0.109 3.891 15 C -0.129 4.129 16 C 0.011 3.989 17 C -0.518 4.518 18 H 0.030 0.970 19 C 0.007 3.993 20 N -0.951 5.951 21 Si 0.948 3.052 22 H -0.266 1.266 23 H -0.299 1.299 24 H -0.238 1.238 25 C -0.102 4.102 26 C 0.056 3.944 27 C -0.117 4.117 28 C -0.081 4.081 29 H 0.067 0.933 30 C -0.147 4.147 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.419 0.581 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.033 0.967 44 H 0.265 0.735 45 H 0.040 0.960 46 H 0.068 0.932 47 H 0.157 0.843 48 H 0.076 0.924 49 H 0.083 0.917 50 H 0.070 0.930 51 H 0.065 0.935 52 H 0.053 0.947 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.528 24.629 4.280 32.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.095 0.905 4 C -0.146 4.146 5 C -0.164 4.164 6 C 0.039 3.961 7 H 0.095 0.905 8 N -0.332 5.332 9 C 0.297 3.703 10 O -0.399 6.399 11 C 0.284 3.716 12 O -0.429 6.429 13 N -0.303 5.303 14 C -0.013 4.013 15 C -0.167 4.167 16 C -0.008 4.008 17 C -0.556 4.556 18 H 0.049 0.951 19 C -0.190 4.190 20 N -0.592 5.592 21 Si 0.775 3.225 22 H -0.192 1.192 23 H -0.227 1.227 24 H -0.161 1.161 25 C -0.140 4.140 26 C -0.064 4.064 27 C -0.155 4.155 28 C -0.100 4.100 29 H 0.085 0.915 30 C -0.204 4.204 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.256 0.744 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.087 0.913 47 H 0.173 0.827 48 H 0.094 0.906 49 H 0.102 0.898 50 H 0.089 0.911 51 H 0.084 0.916 52 H 0.072 0.928 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.520 24.318 4.234 32.748 hybrid contribution 1.479 -0.433 0.148 1.548 sum -20.042 23.885 4.382 31.486 Atomic orbital electron populations 1.21880 0.94611 1.01895 1.02204 1.21185 0.96018 0.99604 0.93516 0.90527 1.21538 0.93464 1.01053 0.98592 1.21888 0.96914 1.00906 0.96713 1.21276 0.76796 1.01083 0.96980 0.90475 1.45902 1.08143 1.28671 1.50516 1.20003 0.87844 0.82409 0.80070 1.90335 1.69327 1.37213 1.43043 1.20268 0.88938 0.81576 0.80798 1.90701 1.70202 1.39252 1.42700 1.48125 1.08055 1.36783 1.37347 1.21917 0.79064 0.96831 1.03441 1.22294 0.99614 0.94199 1.00623 1.19155 0.94066 0.93057 0.94528 1.21374 0.92375 0.93538 1.48351 0.95150 1.25970 1.01378 0.97257 0.94357 1.70065 1.18405 1.18654 1.52058 0.85844 0.77826 0.79654 0.79190 1.19245 1.22733 1.16091 1.21633 0.96024 0.95497 1.00872 1.23325 1.02787 0.88894 0.91383 1.21865 0.96491 1.01410 0.95690 1.21083 0.93220 1.00111 0.95554 0.91466 1.21860 1.01609 1.00520 0.96399 0.92980 0.91685 0.92475 0.90880 0.92245 0.92959 0.90677 0.74360 0.89659 0.88956 0.93128 0.92974 0.94905 0.92627 0.94074 0.91337 0.82729 0.90567 0.89849 0.91080 0.91630 0.92769 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.84 71.98 0.64 -0.57 16 2 C -0.08 -0.78 2.25 -10.79 -0.02 -0.80 16 3 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 4 C -0.11 -1.26 5.20 30.60 0.16 -1.10 16 5 C -0.13 -1.82 5.49 30.60 0.17 -1.65 16 6 C 0.14 2.26 2.45 44.99 0.11 2.37 16 7 H 0.08 1.53 7.58 -2.39 -0.02 1.51 16 8 N -0.68 -13.22 5.07 -443.87 -2.25 -15.47 16 9 C 0.52 13.73 7.74 87.27 0.68 14.41 16 10 O -0.52 -15.60 12.76 -3.22 -0.04 -15.64 16 11 C 0.50 15.54 7.74 87.27 0.68 16.22 16 12 O -0.55 -18.17 15.94 -3.24 -0.05 -18.23 16 13 N -0.57 -18.92 2.97 -819.64 -2.43 -21.35 16 14 C 0.11 3.75 6.44 86.51 0.56 4.31 16 15 C -0.13 -5.42 4.86 30.82 0.15 -5.27 16 16 C 0.01 0.50 1.65 -11.51 -0.02 0.48 16 17 C -0.52 -29.81 9.14 25.60 0.23 -29.58 16 18 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 19 C 0.01 0.41 5.45 84.66 0.46 0.87 16 20 N -0.95 -60.26 13.96 21.45 0.30 -59.96 16 21 Si 0.95 44.53 24.38 68.60 1.67 46.20 16 22 H -0.27 -11.93 6.86 99.48 0.68 -11.24 16 23 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 24 H -0.24 -10.02 6.53 99.48 0.65 -9.37 16 25 C -0.10 -4.08 5.30 30.67 0.16 -3.91 16 26 C 0.06 1.83 6.27 86.36 0.54 2.38 16 27 C -0.12 -1.30 4.67 30.59 0.14 -1.16 16 28 C -0.08 -0.79 2.25 -10.79 -0.02 -0.81 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 C -0.15 -1.17 8.84 71.98 0.64 -0.54 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.45 6.43 -2.39 -0.02 0.43 16 33 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.42 7.01 8.09 -92.71 -0.75 6.26 16 39 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.09 3.04 7.05 -2.38 -0.02 3.02 16 41 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.05 2.25 3.24 -2.39 -0.01 2.24 16 43 H 0.03 1.49 7.20 -2.39 -0.02 1.47 16 44 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 45 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 47 H 0.16 4.91 3.78 -78.83 -0.30 4.61 16 48 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 49 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 51 H 0.06 0.47 6.43 -2.39 -0.02 0.45 16 52 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 53 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 Total: -1.00 -68.68 394.68 2.22 -66.46 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -0.22 Total: 22.35 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 5.24 Total: -4.36 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -4.38 Total: -96.79 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.09 Total: -33.87 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.67 Total: 46.20 kcal Total: -68.68 2.22 -66.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346493449.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.974 kcal (2) G-P(sol) polarization free energy of solvation -68.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds