Wall clock time and date at job start Tue Mar 31 2020 20:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47643 * 2 1 4 4 C 1.53007 * 109.47114 * 239.99723 * 2 1 3 5 5 C 1.52996 * 109.46802 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47246 * 60.00712 * 5 4 2 7 7 H 1.08999 * 109.47313 * 59.99172 * 6 5 4 8 8 N 1.46502 * 109.47146 * 180.02562 * 6 5 4 9 9 C 1.34779 * 119.99342 * 274.99360 * 8 6 5 10 10 O 1.21341 * 120.00292 * 0.02562 * 9 8 6 11 11 C 1.49452 * 119.99709 * 180.02562 * 9 8 6 12 12 O 1.21349 * 120.00088 * 353.22764 * 11 9 8 13 13 N 1.34778 * 120.00214 * 173.23577 * 11 9 8 14 14 C 1.46925 * 120.62644 * 351.34795 * 13 11 9 15 15 C 1.53190 * 108.77484 * 233.63345 * 14 13 11 16 16 C 1.53039 * 109.31324 * 305.36758 * 15 14 13 17 17 C 1.50699 * 109.45854 * 181.38815 * 16 15 14 18 18 H 1.08003 * 120.00469 * 359.72134 * 17 16 15 19 19 C 1.37882 * 119.99690 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00228 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99718 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47073 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46677 * 119.99969 * 21 19 17 24 24 H 1.48500 * 109.47134 * 239.99845 * 21 19 17 25 25 C 1.53036 * 109.53925 * 61.36639 * 16 15 14 26 26 C 1.46920 * 120.63306 * 171.37742 * 13 11 9 27 27 C 1.53007 * 109.46639 * 299.99388 * 6 5 4 28 28 C 1.52999 * 109.47114 * 60.00534 * 27 6 5 29 29 H 1.08994 * 109.47109 * 180.02562 * 28 27 6 30 30 C 1.52994 * 109.47493 * 59.99386 * 28 27 6 31 31 H 1.08998 * 109.47514 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47093 * 300.00160 * 1 2 3 33 33 H 1.09010 * 109.47106 * 60.00139 * 1 2 3 34 34 H 1.09004 * 109.46460 * 60.00474 * 4 2 1 35 35 H 1.08999 * 109.47091 * 300.00615 * 4 2 1 36 36 H 1.09001 * 109.47145 * 299.99964 * 5 4 2 37 37 H 1.09003 * 109.46782 * 180.02562 * 5 4 2 38 38 H 0.96993 * 120.00560 * 94.99730 * 8 6 5 39 39 H 1.09000 * 109.58404 * 113.84582 * 14 13 11 40 40 H 1.09002 * 109.59034 * 353.42246 * 14 13 11 41 41 H 1.09002 * 109.49589 * 185.41458 * 15 14 13 42 42 H 1.08997 * 109.52709 * 65.33498 * 15 14 13 43 43 H 1.09003 * 109.45633 * 301.35514 * 16 15 14 44 44 H 0.97003 * 120.00170 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.49891 * 58.58216 * 25 16 15 46 46 H 1.09000 * 109.50071 * 178.68503 * 25 16 15 47 47 H 1.09001 * 109.58759 * 246.15441 * 26 13 11 48 48 H 1.09002 * 109.59073 * 6.57485 * 26 13 11 49 49 H 1.09004 * 109.46460 * 180.02562 * 27 6 5 50 50 H 1.08999 * 109.47091 * 299.99919 * 27 6 5 51 51 H 1.09003 * 109.47357 * 300.00336 * 30 28 27 52 52 H 1.09004 * 109.47153 * 59.99817 * 30 28 27 53 53 H 1.08996 * 109.47490 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7219 -1.2489 6 6 4.0794 -1.4436 0.0003 7 1 3.7157 -2.4710 0.0001 8 7 5.5444 -1.4435 0.0010 9 6 6.2186 -2.3995 -0.6685 10 8 5.6121 -3.2599 -1.2721 11 6 7.7131 -2.3999 -0.6674 12 8 8.3197 -1.4743 -0.1694 13 7 8.3872 -3.4280 -1.2196 14 6 7.6790 -4.6393 -1.6555 15 6 8.3379 -5.8579 -1.0015 16 6 9.8348 -5.8559 -1.3202 17 6 10.4802 -7.0717 -0.7068 18 1 9.8837 -7.7730 -0.1422 19 6 11.8336 -7.2855 -0.8612 20 7 12.5610 -6.4287 -1.5441 21 14 12.6339 -8.7922 -0.1004 22 1 11.6055 -9.5924 0.6120 23 1 13.2513 -9.6177 -1.1694 24 1 13.6811 -8.3640 0.8615 25 6 10.4787 -4.5921 -0.7454 26 6 9.8440 -3.3592 -1.3965 27 6 3.5694 -0.7222 1.2496 28 6 2.0394 -0.7217 1.2493 29 1 1.6761 -0.2074 2.1390 30 6 1.5289 -2.1639 1.2489 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8901 34 1 1.6767 -0.2074 -2.1392 35 1 1.6766 -1.7490 -1.2493 36 1 3.9337 0.3057 -1.2487 37 1 3.9333 -1.2353 -2.1391 38 1 6.0293 -0.7556 0.4832 39 1 7.7411 -4.7285 -2.7401 40 1 6.6341 -4.5814 -1.3507 41 1 7.8843 -6.7694 -1.3908 42 1 8.1958 -5.8133 0.0782 43 1 9.9760 -5.8760 -2.4008 44 1 13.5131 -6.5794 -1.6530 45 1 10.3163 -4.5587 0.3319 46 1 11.5488 -4.6026 -0.9524 47 1 10.0827 -3.3439 -2.4600 48 1 10.2277 -2.4565 -0.9209 49 1 3.9328 -1.2361 2.1395 50 1 3.9332 0.3053 1.2498 51 1 1.8922 -2.6778 0.3589 52 1 1.8919 -2.6781 2.1389 53 1 0.4389 -2.1636 1.2482 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346493450.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:37 Heat of formation + Delta-G solvation = -104.465933 kcal Electronic energy + Delta-G solvation = -30301.043207 eV Core-core repulsion = 26364.007017 eV Total energy + Delta-G solvation = -3937.036190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.10306 -40.71706 -39.44636 -38.59461 -36.17823 -35.23752 -32.95880 -32.67203 -32.21334 -31.88349 -28.60622 -28.19905 -26.86619 -25.57916 -24.31626 -23.65815 -23.29029 -22.11547 -21.64252 -20.61490 -19.40094 -18.57769 -18.46357 -18.07659 -17.24350 -17.04223 -16.51651 -16.46885 -15.89969 -15.41644 -15.29507 -15.25622 -14.92890 -14.89970 -14.62322 -14.50832 -14.35829 -14.18015 -13.88284 -13.51422 -13.43982 -13.28026 -13.08640 -12.85469 -12.75205 -12.59355 -12.56290 -12.35671 -12.32715 -12.16695 -11.99226 -11.96906 -11.67627 -11.47815 -11.40029 -11.18317 -11.11945 -10.86856 -10.86175 -10.45895 -10.32385 -10.03224 -9.70306 -8.08813 -6.22673 0.30754 1.28881 1.39681 1.42294 1.52885 2.07994 2.42890 2.47479 3.17413 3.25509 3.64091 3.73545 3.91449 4.09894 4.11724 4.16710 4.28433 4.33506 4.36869 4.40971 4.42619 4.42790 4.54914 4.58308 4.66984 4.72707 4.76981 4.78381 4.91454 4.93939 4.98467 5.03764 5.07686 5.11099 5.11738 5.18058 5.21061 5.21878 5.27461 5.31709 5.36048 5.42681 5.45278 5.48188 5.53271 5.62527 5.69192 5.95168 6.01355 6.08339 6.29913 6.36940 6.68109 6.87532 6.91436 7.45233 8.94903 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026208 B = 0.002226 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.125122 B =12576.966878 C =12963.953342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 H 0.076 0.924 4 C -0.109 4.109 5 C -0.127 4.127 6 C 0.140 3.860 7 H 0.083 0.917 8 N -0.683 5.683 9 C 0.516 3.484 10 O -0.524 6.524 11 C 0.497 3.503 12 O -0.554 6.554 13 N -0.571 5.571 14 C 0.080 3.920 15 C -0.115 4.115 16 C 0.043 3.957 17 C -0.532 4.532 18 H 0.051 0.949 19 C 0.013 3.987 20 N -0.915 5.915 21 Si 0.952 3.048 22 H -0.269 1.269 23 H -0.280 1.280 24 H -0.282 1.282 25 C -0.111 4.111 26 C 0.115 3.885 27 C -0.119 4.119 28 C -0.077 4.077 29 H 0.087 0.913 30 C -0.158 4.158 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.417 0.583 39 H 0.067 0.933 40 H 0.139 0.861 41 H 0.069 0.931 42 H 0.044 0.956 43 H 0.004 0.996 44 H 0.261 0.739 45 H 0.025 0.975 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.082 0.918 51 H 0.051 0.949 52 H 0.052 0.948 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.095 15.058 3.828 28.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.094 0.906 4 C -0.147 4.147 5 C -0.165 4.165 6 C 0.037 3.963 7 H 0.101 0.899 8 N -0.335 5.335 9 C 0.297 3.703 10 O -0.402 6.402 11 C 0.280 3.720 12 O -0.434 6.434 13 N -0.303 5.303 14 C -0.041 4.041 15 C -0.153 4.153 16 C 0.024 3.976 17 C -0.570 4.570 18 H 0.069 0.931 19 C -0.186 4.186 20 N -0.554 5.554 21 Si 0.778 3.222 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.208 1.208 25 C -0.149 4.149 26 C -0.007 4.007 27 C -0.157 4.157 28 C -0.095 4.095 29 H 0.106 0.894 30 C -0.215 4.215 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.255 0.745 39 H 0.086 0.914 40 H 0.156 0.844 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.022 0.978 44 H 0.070 0.930 45 H 0.044 0.956 46 H 0.097 0.903 47 H 0.089 0.911 48 H 0.100 0.900 49 H 0.091 0.909 50 H 0.101 0.899 51 H 0.070 0.930 52 H 0.071 0.929 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.035 14.950 3.603 28.533 hybrid contribution 1.489 -0.766 0.313 1.704 sum -22.545 14.184 3.916 26.922 Atomic orbital electron populations 1.21870 0.94483 1.02151 1.02015 1.21171 0.96104 0.99378 0.93778 0.90608 1.21574 0.93245 1.01362 0.98543 1.21889 0.97118 1.00780 0.96739 1.21346 0.76612 1.01458 0.96886 0.89887 1.45925 1.08231 1.28929 1.50411 1.19928 0.87654 0.82506 0.80208 1.90490 1.69597 1.36477 1.43677 1.20399 0.89107 0.83020 0.79500 1.90689 1.70325 1.36722 1.45657 1.48200 1.08592 1.16224 1.57263 1.22870 0.99457 0.82251 0.99495 1.21894 0.97086 0.97003 0.99362 1.18653 0.91080 0.92970 0.94888 1.21582 0.93782 1.08183 1.33426 0.93070 1.25717 0.98040 0.99117 0.95706 1.69969 1.06747 1.36962 1.41744 0.85593 0.78372 0.79935 0.78260 1.19353 1.20596 1.20797 1.21771 1.02119 0.93884 0.97170 1.21807 0.78152 0.99879 1.00841 1.21857 0.96705 1.01331 0.95776 1.21061 0.92973 0.96710 0.98806 0.89424 1.22044 1.01779 0.96054 1.01645 0.92366 0.92063 0.92583 0.91137 0.91752 0.90944 0.93347 0.74532 0.91427 0.84442 0.91212 0.93739 0.97816 0.92961 0.95611 0.90284 0.91139 0.90025 0.90937 0.89908 0.92977 0.92907 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.84 71.98 0.64 -0.59 16 2 C -0.09 -0.83 2.50 -10.79 -0.03 -0.86 16 3 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 4 C -0.11 -1.37 4.93 30.60 0.15 -1.22 16 5 C -0.13 -2.05 5.49 30.59 0.17 -1.89 16 6 C 0.14 2.42 2.18 44.99 0.10 2.52 16 7 H 0.08 1.71 5.87 -2.39 -0.01 1.69 16 8 N -0.68 -14.78 5.07 -443.86 -2.25 -17.03 16 9 C 0.52 15.00 7.70 87.27 0.67 15.67 16 10 O -0.52 -16.58 12.85 -3.22 -0.04 -16.62 16 11 C 0.50 17.26 7.73 87.27 0.67 17.93 16 12 O -0.55 -20.70 15.93 -3.24 -0.05 -20.75 16 13 N -0.57 -21.44 2.97 -820.49 -2.44 -23.88 16 14 C 0.08 2.91 5.98 86.36 0.52 3.42 16 15 C -0.12 -4.79 5.30 30.67 0.16 -4.63 16 16 C 0.04 2.12 2.06 -11.51 -0.02 2.10 16 17 C -0.53 -29.25 8.56 25.60 0.22 -29.03 16 18 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 19 C 0.01 0.71 5.30 84.66 0.45 1.16 16 20 N -0.91 -52.16 11.30 21.45 0.24 -51.92 16 21 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 C -0.11 -5.31 5.15 30.67 0.16 -5.15 16 26 C 0.11 4.66 6.44 86.36 0.56 5.22 16 27 C -0.12 -1.43 4.92 30.60 0.15 -1.28 16 28 C -0.08 -0.77 2.72 -10.79 -0.03 -0.80 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 30 C -0.16 -1.82 8.15 71.98 0.59 -1.24 16 31 H 0.06 0.50 6.43 -2.39 -0.02 0.49 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.06 0.88 6.43 -2.39 -0.02 0.87 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.42 8.05 8.09 -92.71 -0.75 7.30 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.14 4.73 4.32 -47.36 -0.20 4.52 16 41 H 0.07 2.76 8.14 -2.39 -0.02 2.75 16 42 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 45 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.08 4.22 6.03 -2.39 -0.01 4.21 16 47 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 48 H 0.08 3.24 7.01 -2.39 -0.02 3.22 16 49 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 50 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.05 0.73 4.81 -2.39 -0.01 0.71 16 52 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 53 H 0.07 0.66 6.43 -2.39 -0.02 0.64 16 Total: -1.00 -62.64 394.67 2.57 -60.07 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -0.04 Total: 23.07 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 5.12 Total: 1.34 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -4.45 Total: -92.83 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -0.09 Total: -37.37 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -62.64 2.57 -60.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346493450.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.391 kcal (2) G-P(sol) polarization free energy of solvation -62.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds