Wall clock time and date at job start Tue Mar 31 2020 20:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47573 * 2 1 4 4 C 1.53001 * 109.46659 * 239.99447 * 2 1 3 5 5 C 1.52993 * 109.47692 * 300.00160 * 4 2 1 6 6 C 1.53000 * 109.47029 * 300.00487 * 5 4 2 7 7 H 1.09002 * 109.47310 * 299.99593 * 6 5 4 8 8 N 1.46499 * 109.47212 * 179.97438 * 6 5 4 9 9 C 1.34778 * 120.00371 * 84.99104 * 8 6 5 10 10 O 1.21348 * 119.99543 * 0.02562 * 9 8 6 11 11 C 1.49447 * 120.00150 * 180.02562 * 9 8 6 12 12 O 1.21350 * 120.00039 * 6.74937 * 11 9 8 13 13 N 1.34783 * 119.99842 * 186.74826 * 11 9 8 14 14 C 1.46923 * 120.62936 * 8.42804 * 13 11 9 15 15 C 1.53630 * 108.54083 * 126.36691 * 14 13 11 16 16 C 1.53042 * 109.24200 * 54.85774 * 15 14 13 17 17 C 1.53044 * 109.53710 * 298.50923 * 16 15 14 18 18 H 1.09002 * 109.49363 * 301.41381 * 17 16 15 19 19 C 1.50696 * 109.50024 * 181.31874 * 17 16 15 20 20 H 1.08001 * 119.99588 * 0.16055 * 19 17 16 21 21 C 1.37869 * 120.00194 * 180.16294 * 19 17 16 22 22 N 1.31514 * 120.00159 * 180.02562 * 21 19 17 23 23 Si 1.86796 * 120.00014 * 359.97438 * 21 19 17 24 24 H 1.48504 * 109.47348 * 90.00116 * 23 21 19 25 25 H 1.48506 * 109.47130 * 210.00214 * 23 21 19 26 26 H 1.48498 * 109.47128 * 330.00175 * 23 21 19 27 27 C 1.46925 * 120.62843 * 188.70407 * 13 11 9 28 28 C 1.52992 * 109.47566 * 59.99570 * 6 5 4 29 29 H 1.09005 * 109.47321 * 60.00223 * 28 6 5 30 30 C 1.53000 * 109.47566 * 179.97438 * 28 6 5 31 31 C 1.52993 * 109.47298 * 300.00266 * 28 6 5 32 32 H 1.09001 * 109.47497 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46603 * 300.00277 * 1 2 3 34 34 H 1.08992 * 109.47126 * 59.99690 * 1 2 3 35 35 H 1.09000 * 109.46547 * 60.00906 * 4 2 1 36 36 H 1.09003 * 109.46694 * 179.97438 * 4 2 1 37 37 H 1.09005 * 109.46900 * 59.99678 * 5 4 2 38 38 H 1.08997 * 109.47231 * 180.02562 * 5 4 2 39 39 H 0.97007 * 120.00041 * 265.00239 * 8 6 5 40 40 H 1.08998 * 109.58362 * 246.19935 * 14 13 11 41 41 H 1.09001 * 109.58662 * 6.62824 * 14 13 11 42 42 H 1.08995 * 109.63325 * 294.86096 * 15 14 13 43 43 H 1.09005 * 109.45295 * 174.73797 * 15 14 13 44 44 H 1.08998 * 109.46284 * 178.49001 * 16 15 14 45 45 H 1.08996 * 109.45038 * 58.51907 * 16 15 14 46 46 H 0.96998 * 120.00049 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.58833 * 353.37380 * 27 13 11 48 48 H 1.09002 * 109.58262 * 113.79816 * 27 13 11 49 49 H 1.09002 * 109.47310 * 60.00023 * 30 28 6 50 50 H 1.08997 * 109.47197 * 180.02562 * 30 28 6 51 51 H 1.09001 * 109.47043 * 300.00057 * 30 28 6 52 52 H 1.09003 * 109.47184 * 299.99756 * 31 28 6 53 53 H 1.09007 * 109.47300 * 179.97438 * 31 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.5299 -2.1638 -1.2492 6 6 2.0399 -2.8850 0.0001 7 1 3.1299 -2.8851 0.0002 8 7 1.5510 -4.2660 0.0005 9 6 2.2272 -5.2205 -0.6690 10 8 3.2413 -4.9360 -1.2718 11 6 1.7282 -6.6292 -0.6691 12 8 0.6530 -6.8920 -0.1717 13 7 2.4724 -7.6077 -1.2217 14 6 3.8492 -7.3435 -1.6613 15 6 4.7785 -8.3747 -1.0033 16 6 4.2761 -9.7841 -1.3248 17 6 2.8692 -9.9691 -0.7514 18 1 2.8914 -9.8069 0.3262 19 6 2.3881 -11.3676 -1.0404 20 1 3.0231 -12.0570 -1.5769 21 6 1.1373 -11.7671 -0.6199 22 7 0.7177 -12.9878 -0.8717 23 14 0.0392 -10.5749 0.3086 24 1 -0.7993 -9.8197 -0.6567 25 1 -0.8366 -11.3310 1.2395 26 1 0.8807 -9.6261 1.0813 27 6 1.9201 -8.9573 -1.4014 28 6 1.5300 -2.1638 1.2493 29 1 0.4399 -2.1637 1.2494 30 6 2.0394 -2.8853 2.4986 31 6 2.0400 -0.7213 1.2493 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7210 -1.2495 37 1 0.4399 -2.1638 -1.2491 38 1 1.8936 -2.6778 -2.1389 39 1 0.7405 -4.4936 0.4825 40 1 3.9098 -7.4324 -2.7459 41 1 4.1431 -6.3386 -1.3579 42 1 4.7827 -8.2275 0.0767 43 1 5.7898 -8.2517 -1.3912 44 1 4.9481 -10.5191 -0.8820 45 1 4.2486 -9.9218 -2.4057 46 1 -0.1622 -13.2689 -0.5755 47 1 0.9409 -9.0176 -0.9265 48 1 1.8267 -9.1751 -2.4653 49 1 3.1294 -2.8858 2.4989 50 1 1.6757 -2.3717 3.3885 51 1 1.6756 -3.9128 2.4984 52 1 3.1300 -0.7213 1.2493 53 1 1.6763 -0.2073 2.1391 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350752049.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:13 Heat of formation + Delta-G solvation = -100.927894 kcal Electronic energy + Delta-G solvation = -31022.524653 eV Core-core repulsion = 27085.641884 eV Total energy + Delta-G solvation = -3936.882769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.19069 -40.79304 -39.42932 -38.68890 -36.02953 -35.17218 -33.72620 -33.51769 -32.27851 -31.61781 -28.11828 -27.53451 -27.12628 -26.80164 -24.59555 -23.62793 -22.98357 -22.09985 -21.55949 -20.69900 -19.65458 -19.00049 -18.52984 -18.23710 -17.37684 -17.00320 -16.47857 -16.26904 -15.97517 -15.77286 -15.70390 -15.40192 -15.12739 -14.91538 -14.72497 -14.68190 -14.33751 -14.19756 -13.94708 -13.75469 -13.66623 -13.32038 -13.12761 -13.04777 -12.92687 -12.71944 -12.50286 -12.35723 -12.30636 -12.14777 -12.00239 -11.82314 -11.73882 -11.63189 -11.34571 -11.33472 -11.11443 -11.07497 -11.04577 -10.82657 -10.36151 -10.07812 -9.75083 -8.39748 -6.42643 0.25596 1.21906 1.23165 1.30376 1.40889 2.02719 2.20459 2.43571 2.96219 3.20975 3.57198 3.70113 3.85729 3.94325 4.09512 4.10961 4.13473 4.16677 4.32196 4.37085 4.37589 4.45364 4.46583 4.51668 4.55321 4.63117 4.71382 4.72456 4.80193 4.87168 4.92167 4.94970 4.97065 5.03267 5.07872 5.09173 5.15285 5.16818 5.22347 5.26156 5.27329 5.33588 5.38273 5.44606 5.45357 5.50619 5.57568 5.61904 5.63681 5.94999 6.22427 6.26334 6.61663 6.67430 6.85532 7.22919 8.76164 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019288 B = 0.002973 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.350383 B = 9415.027403 C =10095.017745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 H 0.083 0.917 4 C -0.107 4.107 5 C -0.130 4.130 6 C 0.149 3.851 7 H 0.085 0.915 8 N -0.683 5.683 9 C 0.522 3.478 10 O -0.518 6.518 11 C 0.487 3.513 12 O -0.562 6.562 13 N -0.577 5.577 14 C 0.071 3.929 15 C -0.126 4.126 16 C -0.099 4.099 17 C 0.006 3.994 18 H 0.017 0.983 19 C -0.512 4.512 20 H 0.051 0.949 21 C 0.027 3.973 22 N -0.937 5.937 23 Si 0.936 3.064 24 H -0.277 1.277 25 H -0.292 1.292 26 H -0.264 1.264 27 C 0.104 3.896 28 C -0.094 4.094 29 H 0.086 0.914 30 C -0.150 4.150 31 C -0.101 4.101 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.415 0.585 40 H 0.078 0.922 41 H 0.144 0.856 42 H 0.056 0.944 43 H 0.104 0.896 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.268 0.732 47 H 0.056 0.944 48 H 0.073 0.927 49 H 0.054 0.946 50 H 0.071 0.929 51 H 0.043 0.957 52 H 0.068 0.932 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.138 30.962 3.100 31.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 H 0.101 0.899 4 C -0.145 4.145 5 C -0.168 4.168 6 C 0.046 3.954 7 H 0.103 0.897 8 N -0.334 5.334 9 C 0.303 3.697 10 O -0.396 6.396 11 C 0.270 3.730 12 O -0.442 6.442 13 N -0.308 5.308 14 C -0.049 4.049 15 C -0.164 4.164 16 C -0.137 4.137 17 C -0.014 4.014 18 H 0.035 0.965 19 C -0.551 4.551 20 H 0.069 0.931 21 C -0.172 4.172 22 N -0.577 5.577 23 Si 0.765 3.235 24 H -0.203 1.203 25 H -0.219 1.219 26 H -0.189 1.189 27 C -0.018 4.018 28 C -0.113 4.113 29 H 0.104 0.896 30 C -0.208 4.208 31 C -0.139 4.139 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.252 0.748 40 H 0.096 0.904 41 H 0.160 0.840 42 H 0.075 0.925 43 H 0.122 0.878 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.091 0.909 49 H 0.073 0.927 50 H 0.090 0.910 51 H 0.062 0.938 52 H 0.086 0.914 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.171 30.906 2.952 31.325 hybrid contribution -1.411 -0.797 0.420 1.673 sum 2.761 30.109 3.372 30.423 Atomic orbital electron populations 1.21957 0.95188 1.01870 1.01961 1.21138 0.96032 0.99632 0.94127 0.89861 1.21507 1.00860 0.93554 0.98613 1.21939 1.01536 0.96621 0.96719 1.21344 0.99765 0.77922 0.96374 0.89737 1.45951 1.28707 1.08504 1.50227 1.19730 0.84035 0.85699 0.80239 1.90460 1.24123 1.81472 1.43575 1.20681 0.85155 0.87510 0.79637 1.90719 1.23824 1.83827 1.45820 1.48389 1.15559 1.09592 1.57278 1.23110 0.78064 1.03531 1.00181 1.22035 0.99858 0.93845 1.00682 1.21413 0.95110 0.96629 1.00545 1.19412 0.94300 0.92261 0.95428 0.96517 1.21267 1.00962 0.96847 1.36000 0.93091 1.25665 0.99224 0.96097 0.96194 1.69988 1.20360 1.19077 1.48238 0.86069 0.79524 0.78416 0.79457 1.20344 1.21924 1.18889 1.22355 0.98022 0.80274 1.01106 1.21432 1.01559 0.95742 0.92564 0.89627 1.21859 1.01373 0.99929 0.97610 1.21579 1.01018 0.92839 0.98488 0.92726 0.92112 0.92699 0.91079 0.91614 0.91026 0.93186 0.74845 0.90384 0.83971 0.92526 0.87769 0.92294 0.92165 0.92284 0.92615 0.90916 0.92668 0.90979 0.93790 0.91356 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.50 71.98 0.61 -0.82 16 2 C -0.09 -0.83 3.20 -10.79 -0.03 -0.87 16 3 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 4 C -0.11 -1.26 5.45 30.59 0.17 -1.09 16 5 C -0.13 -2.08 5.22 30.59 0.16 -1.92 16 6 C 0.15 2.53 1.90 44.99 0.09 2.62 16 7 H 0.08 1.62 7.58 -2.39 -0.02 1.60 16 8 N -0.68 -15.23 4.37 -443.88 -1.94 -17.17 16 9 C 0.52 15.10 7.71 87.27 0.67 15.77 16 10 O -0.52 -15.19 12.84 -3.24 -0.04 -15.23 16 11 C 0.49 17.98 7.73 87.27 0.67 18.66 16 12 O -0.56 -23.91 15.93 -3.25 -0.05 -23.96 16 13 N -0.58 -21.91 2.97 -819.63 -2.43 -24.34 16 14 C 0.07 2.17 6.01 86.51 0.52 2.69 16 15 C -0.13 -3.74 6.10 30.82 0.19 -3.56 16 16 C -0.10 -3.75 5.10 30.62 0.16 -3.59 16 17 C 0.01 0.26 1.84 -11.46 -0.02 0.24 16 18 H 0.02 0.84 7.21 -2.39 -0.02 0.82 16 19 C -0.51 -29.15 9.14 25.60 0.23 -28.92 16 20 H 0.05 3.12 7.99 -2.91 -0.02 3.10 16 21 C 0.03 1.60 5.45 84.65 0.46 2.06 16 22 N -0.94 -58.80 13.96 21.44 0.30 -58.50 16 23 Si 0.94 49.04 24.32 68.60 1.67 50.70 16 24 H -0.28 -14.46 6.92 99.48 0.69 -13.77 16 25 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 26 H -0.26 -13.77 6.53 99.48 0.65 -13.12 16 27 C 0.10 4.71 5.12 86.36 0.44 5.16 16 28 C -0.09 -1.17 2.02 -10.80 -0.02 -1.19 16 29 H 0.09 1.02 6.43 -2.38 -0.02 1.00 16 30 C -0.15 -2.05 9.04 71.98 0.65 -1.40 16 31 C -0.10 -0.94 4.73 30.59 0.14 -0.80 16 32 H 0.05 0.59 4.81 -2.39 -0.01 0.58 16 33 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 1.11 6.43 -2.38 -0.02 1.10 16 38 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.41 8.93 7.87 -92.70 -0.73 8.20 16 40 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.14 4.09 4.30 -48.51 -0.21 3.88 16 42 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 43 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 44 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 47 H 0.06 2.80 2.32 -2.39 -0.01 2.79 16 48 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 49 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 51 H 0.04 0.73 7.44 -2.39 -0.02 0.72 16 52 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 53 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 Total: -1.00 -69.54 390.16 2.49 -67.05 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -0.10 Total: 18.41 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 5.09 Total: 3.03 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -4.07 Total: -100.01 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.09 Total: -39.19 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 1.67 Total: 50.70 kcal Total: -69.54 2.49 -67.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350752049.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.878 kcal (2) G-P(sol) polarization free energy of solvation -69.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds