Wall clock time and date at job start Tue Mar 31 2020 20:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47263 * 2 1 4 4 C 1.53007 * 109.47276 * 240.00222 * 2 1 3 5 5 C 1.52999 * 109.46475 * 299.99988 * 4 2 1 6 6 C 1.52997 * 109.47179 * 299.99291 * 5 4 2 7 7 H 1.08996 * 109.47193 * 300.00437 * 6 5 4 8 8 N 1.46501 * 109.46909 * 180.02562 * 6 5 4 9 9 C 1.34776 * 120.00166 * 85.00659 * 8 6 5 10 10 O 1.21351 * 119.99845 * 359.97438 * 9 8 6 11 11 C 1.49448 * 120.00291 * 179.97438 * 9 8 6 12 12 O 1.21352 * 120.00101 * 353.07224 * 11 9 8 13 13 N 1.34783 * 119.99960 * 173.06739 * 11 9 8 14 14 C 1.46923 * 120.62936 * 1.67650 * 13 11 9 15 15 C 1.52765 * 109.00488 * 233.58305 * 14 13 11 16 16 C 1.53031 * 109.38353 * 305.58813 * 15 14 13 17 17 C 1.53038 * 109.54058 * 61.24129 * 16 15 14 18 18 H 1.09008 * 109.49467 * 58.58619 * 17 16 15 19 19 C 1.50702 * 109.52530 * 178.66586 * 17 16 15 20 20 H 1.07998 * 120.00294 * 359.85650 * 19 17 16 21 21 C 1.37882 * 119.99729 * 179.85917 * 19 17 16 22 22 N 1.31514 * 119.99915 * 359.97438 * 21 19 17 23 23 Si 1.86794 * 119.99956 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47160 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47229 * 119.99418 * 23 21 19 26 26 H 1.48494 * 109.47146 * 239.99757 * 23 21 19 27 27 C 1.46917 * 120.62876 * 181.95543 * 13 11 9 28 28 C 1.53003 * 109.46989 * 60.00601 * 6 5 4 29 29 H 1.09006 * 109.46794 * 59.99943 * 28 6 5 30 30 C 1.52994 * 109.47176 * 179.97438 * 28 6 5 31 31 C 1.53001 * 109.47169 * 299.99886 * 28 6 5 32 32 H 1.09000 * 109.47263 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46929 * 299.99847 * 1 2 3 34 34 H 1.08994 * 109.47439 * 59.99705 * 1 2 3 35 35 H 1.08997 * 109.47107 * 179.97438 * 4 2 1 36 36 H 1.09003 * 109.46669 * 59.99943 * 4 2 1 37 37 H 1.09008 * 109.46705 * 179.97438 * 5 4 2 38 38 H 1.08997 * 109.47239 * 60.00355 * 5 4 2 39 39 H 0.96998 * 120.00001 * 265.00052 * 8 6 5 40 40 H 1.08998 * 109.58756 * 353.41499 * 14 13 11 41 41 H 1.09001 * 109.58608 * 113.84587 * 14 13 11 42 42 H 1.09005 * 109.56121 * 185.55613 * 15 14 13 43 43 H 1.09000 * 109.38739 * 65.51793 * 15 14 13 44 44 H 1.09001 * 109.46339 * 301.22199 * 16 15 14 45 45 H 1.09002 * 109.44970 * 181.25518 * 16 15 14 46 46 H 0.97005 * 119.99531 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.58943 * 246.15495 * 27 13 11 48 48 H 1.09007 * 109.59383 * 6.44175 * 27 13 11 49 49 H 1.08997 * 109.47290 * 59.99674 * 30 28 6 50 50 H 1.08998 * 109.47051 * 180.02562 * 30 28 6 51 51 H 1.09000 * 109.47132 * 299.99873 * 30 28 6 52 52 H 1.08998 * 109.47092 * 179.97438 * 31 28 6 53 53 H 1.08996 * 109.47021 * 300.00170 * 31 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2492 6 6 2.0401 -2.8849 -0.0001 7 1 3.1300 -2.8849 -0.0002 8 7 1.5521 -4.2663 -0.0004 9 6 2.2293 -5.2201 -0.6698 10 8 3.2430 -4.9345 -1.2728 11 6 1.7319 -6.6294 -0.6697 12 8 0.7928 -6.9413 0.0327 13 7 2.3264 -7.5539 -1.4497 14 6 3.4873 -7.2001 -2.2778 15 6 3.2083 -7.6042 -3.7243 16 6 2.8289 -9.0859 -3.7736 17 6 1.5583 -9.3165 -2.9522 18 1 0.7513 -8.7010 -3.3499 19 6 1.1666 -10.7698 -3.0277 20 1 1.7625 -11.4604 -3.6059 21 6 0.0472 -11.2177 -2.3587 22 7 -0.6782 -10.3767 -1.6542 23 14 -0.4380 -13.0191 -2.4517 24 1 0.5355 -13.7507 -3.3015 25 1 -0.4399 -13.6024 -1.0860 26 1 -1.7956 -13.1362 -3.0418 27 6 1.8221 -8.9332 -1.4926 28 6 1.5301 -2.1637 1.2492 29 1 0.4400 -2.1638 1.2492 30 6 2.0397 -2.8853 2.4984 31 6 2.0401 -0.7212 1.2492 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 -0.3634 0.5138 -0.8899 35 1 3.1300 -0.7208 -1.2495 36 1 1.6766 -0.2073 -2.1393 37 1 1.8929 -2.6774 -2.1395 38 1 0.4400 -2.1637 -1.2493 39 1 0.7417 -4.4945 0.4813 40 1 3.6585 -6.1248 -2.2268 41 1 4.3688 -7.7301 -1.9168 42 1 4.1000 -7.4367 -4.3285 43 1 2.3860 -7.0049 -4.1152 44 1 3.6418 -9.6829 -3.3602 45 1 2.6512 -9.3809 -4.8077 46 1 -1.4655 -10.6920 -1.1833 47 1 2.5649 -9.6074 -1.0663 48 1 0.8961 -9.0017 -0.9217 49 1 3.1296 -2.8857 2.4986 50 1 1.6760 -2.3717 3.3884 51 1 1.6760 -3.9128 2.4982 52 1 1.6764 -0.2073 2.1390 53 1 3.1300 -0.7212 1.2492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350752051.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:21 Heat of formation + Delta-G solvation = -102.326581 kcal Electronic energy + Delta-G solvation = -30873.292284 eV Core-core repulsion = 26936.348864 eV Total energy + Delta-G solvation = -3936.943421 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.09807 -40.68141 -39.33295 -38.53602 -36.00039 -35.12482 -33.63127 -33.41221 -31.62671 -31.56272 -28.04616 -27.51221 -27.13018 -26.62941 -24.51651 -23.54073 -22.93154 -22.07845 -21.60632 -20.56830 -19.61148 -18.76131 -18.15975 -17.96651 -17.09002 -16.94968 -16.49453 -16.36074 -15.89332 -15.74600 -15.51593 -15.27842 -14.89751 -14.70984 -14.65558 -14.48241 -14.36245 -13.95596 -13.87385 -13.63904 -13.50369 -13.19045 -12.99097 -12.90888 -12.90171 -12.69552 -12.45758 -12.31854 -12.28104 -12.15907 -11.98615 -11.77343 -11.72306 -11.59629 -11.30047 -11.17837 -11.08845 -11.02043 -10.98348 -10.56327 -10.21413 -9.95528 -9.56101 -8.12910 -6.29478 0.36933 1.34350 1.41322 1.42035 1.53637 2.16522 2.40551 2.57733 3.15254 3.30064 3.59537 3.72270 3.87926 4.11196 4.13946 4.18277 4.18969 4.31692 4.35337 4.39439 4.48560 4.53790 4.57197 4.63503 4.72439 4.74486 4.80269 4.81471 4.89451 4.96892 4.99148 5.04389 5.09939 5.11331 5.17048 5.17780 5.22082 5.24453 5.27236 5.29803 5.38846 5.40238 5.45228 5.46656 5.55572 5.59823 5.64172 5.83058 5.92870 6.02895 6.29162 6.44720 6.75723 6.83405 6.99473 7.40356 8.91157 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019612 B = 0.002684 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.376422 B =10428.274056 C =10986.867077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 H 0.084 0.916 4 C -0.107 4.107 5 C -0.131 4.131 6 C 0.148 3.852 7 H 0.084 0.916 8 N -0.681 5.681 9 C 0.523 3.477 10 O -0.519 6.519 11 C 0.483 3.517 12 O -0.560 6.560 13 N -0.573 5.573 14 C 0.049 3.951 15 C -0.123 4.123 16 C -0.107 4.107 17 C 0.040 3.960 18 H -0.011 1.011 19 C -0.535 4.535 20 H 0.062 0.938 21 C 0.011 3.989 22 N -0.914 5.914 23 Si 0.960 3.040 24 H -0.262 1.262 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.120 3.880 28 C -0.094 4.094 29 H 0.085 0.915 30 C -0.150 4.150 31 C -0.101 4.101 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.414 0.586 40 H 0.158 0.842 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.046 0.954 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.261 0.739 47 H 0.042 0.958 48 H 0.085 0.915 49 H 0.054 0.946 50 H 0.072 0.928 51 H 0.043 0.957 52 H 0.082 0.918 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.902 23.029 4.968 24.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 H 0.103 0.897 4 C -0.145 4.145 5 C -0.169 4.169 6 C 0.045 3.955 7 H 0.102 0.898 8 N -0.332 5.332 9 C 0.305 3.695 10 O -0.398 6.398 11 C 0.266 3.734 12 O -0.440 6.440 13 N -0.304 5.304 14 C -0.072 4.072 15 C -0.161 4.161 16 C -0.145 4.145 17 C 0.021 3.979 18 H 0.007 0.993 19 C -0.573 4.573 20 H 0.080 0.920 21 C -0.189 4.189 22 N -0.553 5.553 23 Si 0.785 3.215 24 H -0.186 1.186 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.001 4.001 28 C -0.113 4.113 29 H 0.103 0.897 30 C -0.207 4.207 31 C -0.138 4.138 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.251 0.749 40 H 0.174 0.826 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.061 0.939 48 H 0.103 0.897 49 H 0.073 0.927 50 H 0.091 0.909 51 H 0.062 0.938 52 H 0.100 0.900 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.985 23.072 5.025 24.624 hybrid contribution -1.104 -1.728 0.126 2.055 sum 5.881 21.344 5.151 22.731 Atomic orbital electron populations 1.21958 0.95243 1.01831 1.01975 1.21138 0.95991 0.99655 0.94107 0.89736 1.21506 1.00869 0.93432 0.98662 1.21951 1.01496 0.96747 0.96754 1.21351 0.99734 0.77946 0.96423 0.89784 1.45945 1.28592 1.08441 1.50223 1.19908 0.84018 0.85862 0.79759 1.90240 1.25175 1.81450 1.42935 1.20548 0.83735 0.87381 0.81764 1.90732 1.29113 1.81620 1.42496 1.48483 1.30642 1.10579 1.40734 1.23297 0.86170 1.07728 0.89968 1.21805 1.01916 0.96031 0.96352 1.21560 0.97546 0.95791 0.99582 1.18898 0.93020 0.95114 0.90908 0.99265 1.21510 1.10371 0.94656 1.30791 0.91959 1.25889 0.96253 1.01977 0.94763 1.70065 1.17021 1.36014 1.32161 0.85477 0.78099 0.80049 0.77872 1.18642 1.20706 1.20760 1.21947 0.98971 0.77989 1.01233 1.21435 1.01530 0.95794 0.92541 0.89708 1.21852 1.01321 0.99953 0.97585 1.21575 1.01018 0.92757 0.98497 0.92851 0.92015 0.92722 0.91547 0.91091 0.93270 0.91163 0.74887 0.82591 0.91216 0.88284 0.93485 0.92511 0.92769 0.92964 0.93932 0.89665 0.92692 0.90863 0.93824 0.89986 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.50 71.98 0.61 -1.10 16 2 C -0.09 -0.97 3.19 -10.79 -0.03 -1.01 16 3 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 4 C -0.11 -1.46 5.45 30.60 0.17 -1.29 16 5 C -0.13 -2.43 5.22 30.59 0.16 -2.28 16 6 C 0.15 2.90 1.90 44.99 0.09 2.98 16 7 H 0.08 1.81 7.58 -2.39 -0.02 1.79 16 8 N -0.68 -17.44 4.38 -443.87 -1.94 -19.38 16 9 C 0.52 17.16 7.77 87.27 0.68 17.84 16 10 O -0.52 -17.02 12.68 -3.25 -0.04 -17.06 16 11 C 0.48 20.23 7.76 87.27 0.68 20.91 16 12 O -0.56 -26.91 15.91 -3.25 -0.05 -26.96 16 13 N -0.57 -24.74 2.98 -821.31 -2.45 -27.18 16 14 C 0.05 1.71 6.20 86.22 0.53 2.24 16 15 C -0.12 -4.22 6.06 30.53 0.19 -4.04 16 16 C -0.11 -4.41 5.11 30.62 0.16 -4.25 16 17 C 0.04 2.06 2.25 -11.46 -0.03 2.03 16 18 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 19 C -0.53 -29.73 8.57 25.60 0.22 -29.51 16 20 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 21 C 0.01 0.60 5.30 84.66 0.45 1.05 16 22 N -0.91 -54.92 11.39 21.45 0.24 -54.67 16 23 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 24 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 26 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 27 C 0.12 6.14 5.40 86.36 0.47 6.61 16 28 C -0.09 -1.36 2.02 -10.79 -0.02 -1.38 16 29 H 0.08 1.19 6.43 -2.38 -0.02 1.18 16 30 C -0.15 -2.29 9.04 71.98 0.65 -1.64 16 31 C -0.10 -1.08 4.73 30.59 0.14 -0.94 16 32 H 0.05 0.69 4.81 -2.39 -0.01 0.68 16 33 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.07 1.29 6.43 -2.39 -0.02 1.28 16 39 H 0.41 10.42 7.88 -92.71 -0.73 9.69 16 40 H 0.16 5.25 3.79 -82.30 -0.31 4.93 16 41 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 43 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 47 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.09 5.06 5.13 -2.38 -0.01 5.04 16 49 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.04 0.82 7.44 -2.39 -0.02 0.80 16 52 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 53 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -67.22 396.62 2.76 -64.46 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: -0.13 Total: 28.30 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 5.10 Total: 6.24 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -4.14 Total: -101.23 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -0.09 Total: -44.02 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -67.22 2.76 -64.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350752051.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.867 kcal (2) G-P(sol) polarization free energy of solvation -67.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds