Wall clock time and date at job start Tue Mar 31 2020 21:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.26939 * 2 1 4 4 C 1.55202 * 110.45318 * 238.04928 * 2 1 3 5 5 C 1.55304 * 100.82567 * 204.75188 * 4 2 1 6 6 H 1.09002 * 110.84767 * 275.59388 * 5 4 2 7 7 C 1.50700 * 110.85031 * 152.17908 * 5 4 2 8 8 O 1.21280 * 120.00199 * 2.77110 * 7 5 4 9 9 N 1.34776 * 119.99891 * 182.77252 * 7 5 4 10 10 C 1.46932 * 120.62952 * 179.97438 * 9 7 5 11 11 C 1.53192 * 108.77410 * 233.59007 * 10 9 7 12 12 C 1.53040 * 109.31041 * 305.35924 * 11 10 9 13 13 N 1.46500 * 109.46262 * 181.38754 * 12 11 10 14 14 C 1.36934 * 120.00008 * 300.00735 * 13 12 11 15 15 H 1.08007 * 120.00020 * 337.09269 * 14 13 12 16 16 C 1.38819 * 120.00357 * 157.08881 * 14 13 12 17 17 N 1.31612 * 119.99677 * 350.39555 * 16 14 13 18 18 Si 1.86796 * 120.00131 * 170.39118 * 16 14 13 19 19 H 1.48500 * 109.47092 * 90.00439 * 18 16 14 20 20 H 1.48498 * 109.47135 * 210.00409 * 18 16 14 21 21 H 1.48500 * 109.47514 * 330.00367 * 18 16 14 22 22 C 1.46498 * 120.00189 * 119.99899 * 13 12 11 23 23 C 1.53001 * 109.47176 * 278.01908 * 22 13 12 24 24 C 1.53001 * 117.49615 * 184.99861 * 23 22 13 25 25 C 1.52999 * 60.03208 * 252.50041 * 24 23 22 26 26 C 1.53037 * 109.53626 * 61.37084 * 12 11 10 27 27 C 1.46922 * 120.63468 * 359.97438 * 9 7 5 28 28 C 1.54381 * 102.43522 * 33.88496 * 5 4 2 29 29 O 1.43236 * 107.59193 * 338.74467 * 28 5 4 30 30 H 1.08996 * 109.47408 * 299.35372 * 1 2 3 31 31 H 1.09000 * 109.47555 * 59.35885 * 1 2 3 32 32 H 1.09004 * 109.46884 * 179.35827 * 1 2 3 33 33 H 1.09000 * 111.30840 * 86.82231 * 4 2 1 34 34 H 1.09001 * 111.05867 * 322.57629 * 4 2 1 35 35 H 1.08998 * 109.58723 * 113.79996 * 10 9 7 36 36 H 1.08999 * 109.58497 * 353.37467 * 10 9 7 37 37 H 1.09004 * 109.49629 * 185.41565 * 11 10 9 38 38 H 1.08996 * 109.52985 * 65.33213 * 11 10 9 39 39 H 1.09000 * 109.46747 * 301.36061 * 12 11 10 40 40 H 0.97005 * 120.00515 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.47178 * 158.01643 * 22 13 12 42 42 H 1.09002 * 109.47076 * 38.02020 * 22 13 12 43 43 H 1.09000 * 115.56233 * 330.68057 * 23 22 13 44 44 H 1.08998 * 117.50097 * 359.97438 * 24 23 22 45 45 H 1.09003 * 117.49747 * 144.99833 * 24 23 22 46 46 H 1.08995 * 117.50125 * 107.50301 * 25 24 23 47 47 H 1.09005 * 117.49502 * 252.52744 * 25 24 23 48 48 H 1.08995 * 109.49981 * 58.58535 * 26 12 11 49 49 H 1.09004 * 109.50014 * 178.68257 * 26 12 11 50 50 H 1.09002 * 109.59067 * 246.20390 * 27 9 7 51 51 H 1.09007 * 109.58436 * 6.62318 * 27 9 7 52 52 H 1.09002 * 109.82954 * 98.26039 * 28 5 4 53 53 H 1.09006 * 109.82986 * 219.13965 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0724 -0.7695 -1.2339 5 6 3.4722 -1.1999 -0.7171 6 1 4.2014 -0.4029 -0.8626 7 6 3.9263 -2.4687 -1.3917 8 8 3.2395 -2.9772 -2.2523 9 7 5.0956 -3.0383 -1.0387 10 6 5.5514 -4.2756 -1.6869 11 6 5.8621 -5.3139 -0.6042 12 6 6.8609 -4.7221 0.3929 13 7 7.1857 -5.7238 1.4113 14 6 6.1954 -6.2417 2.2026 15 1 5.2801 -5.6886 2.3536 16 6 6.3678 -7.4777 2.8106 17 7 7.3920 -8.2359 2.4814 18 14 5.1462 -8.0648 4.0960 19 1 4.0545 -8.8217 3.4322 20 1 5.8382 -8.9462 5.0704 21 1 4.5746 -6.8933 4.8074 22 6 8.5699 -6.1716 1.5831 23 6 8.8919 -7.2447 0.5411 24 6 10.2585 -7.9270 0.6287 25 6 9.9752 -6.9247 -0.4920 26 6 6.2454 -3.4927 1.0651 27 6 5.9388 -2.4340 0.0017 28 6 3.2126 -1.4393 0.7858 29 8 2.0286 -0.7157 1.1412 30 1 -0.3634 0.5037 0.8957 31 1 -0.3634 0.5237 -0.8842 32 1 -0.3633 -1.0277 -0.0115 33 1 2.1580 -0.1160 -2.1020 34 1 1.4523 -1.6376 -1.4577 35 1 6.4510 -4.0735 -2.2683 36 1 4.7676 -4.6547 -2.3426 37 1 6.2921 -6.2030 -1.0655 38 1 4.9434 -5.5827 -0.0829 39 1 7.7701 -4.4310 -0.1331 40 1 7.5128 -9.0994 2.9064 41 1 8.6961 -6.5867 2.5830 42 1 9.2444 -5.3252 1.4533 43 1 8.0470 -7.8504 0.2133 44 1 10.9284 -7.6111 1.4285 45 1 10.3127 -8.9817 0.3589 46 1 10.4585 -5.9498 -0.4293 47 1 9.8425 -7.3201 -1.4991 48 1 5.3229 -3.7780 1.5707 49 1 6.9482 -3.0854 1.7921 50 1 6.8700 -2.0814 -0.4417 51 1 5.4105 -1.5979 0.4602 52 1 3.0651 -2.5034 0.9707 53 1 4.0586 -1.0765 1.3696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483816817.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:14 Heat of formation + Delta-G solvation = -43.652155 kcal Electronic energy + Delta-G solvation = -31167.656167 eV Core-core repulsion = 27233.257060 eV Total energy + Delta-G solvation = -3934.399107 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.76377 -40.02220 -39.05070 -37.87824 -36.11554 -34.04151 -33.41809 -32.95497 -31.63535 -31.33395 -27.94263 -27.14293 -26.58276 -24.62160 -23.97586 -23.03576 -22.96801 -22.19991 -21.41752 -20.99001 -19.85065 -18.50982 -18.18119 -17.65627 -17.29754 -16.94177 -16.44591 -16.13818 -15.95173 -15.48227 -15.45322 -15.18624 -15.09901 -14.87704 -14.64732 -14.35886 -14.13653 -13.65144 -13.42773 -13.35882 -13.23374 -13.19486 -13.03561 -12.81407 -12.70601 -12.48397 -12.33987 -12.27195 -12.20140 -12.16718 -12.01263 -11.96876 -11.80990 -11.77602 -11.46265 -11.26153 -10.89298 -10.86922 -10.50786 -10.47526 -10.10179 -9.64748 -8.56013 -7.69603 -5.15155 1.44414 1.48695 1.50178 1.53658 1.96095 2.55146 2.76682 3.23725 3.35497 3.42307 3.48585 3.62872 3.79685 3.91957 3.98876 4.09209 4.16274 4.21399 4.24564 4.29507 4.38342 4.45785 4.46841 4.48738 4.53604 4.63082 4.65391 4.70836 4.80066 4.83787 4.86746 4.86929 4.88370 4.89518 4.95281 4.98567 5.09144 5.15771 5.16984 5.21294 5.30328 5.43832 5.45088 5.54716 5.59362 5.66303 5.76199 5.87761 6.01215 6.01969 6.40199 6.49116 7.09073 7.31522 8.03634 8.44574 9.29956 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.003410 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.169388 B = 8209.299808 C = 9529.944229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.072 3.928 3 H 0.098 0.902 4 C -0.129 4.129 5 C -0.138 4.138 6 H 0.147 0.853 7 C 0.519 3.481 8 O -0.584 6.584 9 N -0.602 5.602 10 C 0.122 3.878 11 C -0.123 4.123 12 C 0.178 3.822 13 N -0.599 5.599 14 C -0.240 4.240 15 H 0.059 0.941 16 C -0.043 4.043 17 N -0.911 5.911 18 Si 0.943 3.057 19 H -0.299 1.299 20 H -0.296 1.296 21 H -0.278 1.278 22 C 0.214 3.786 23 C -0.097 4.097 24 C -0.183 4.183 25 C -0.193 4.193 26 C -0.135 4.135 27 C 0.107 3.893 28 C 0.065 3.935 29 O -0.399 6.399 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.108 0.892 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.241 0.759 41 H 0.050 0.950 42 H 0.026 0.974 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.042 0.958 49 H 0.079 0.921 50 H 0.097 0.903 51 H 0.107 0.893 52 H 0.046 0.954 53 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 18.658 -7.300 20.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.015 3.985 3 H 0.116 0.884 4 C -0.167 4.167 5 C -0.159 4.159 6 H 0.165 0.835 7 C 0.309 3.691 8 O -0.465 6.465 9 N -0.334 5.334 10 C -0.002 4.002 11 C -0.163 4.163 12 C 0.071 3.929 13 N -0.319 5.319 14 C -0.371 4.371 15 H 0.077 0.923 16 C -0.239 4.239 17 N -0.557 5.557 18 Si 0.775 3.225 19 H -0.227 1.227 20 H -0.223 1.223 21 H -0.203 1.203 22 C 0.089 3.911 23 C -0.118 4.118 24 C -0.221 4.221 25 C -0.230 4.230 26 C -0.175 4.175 27 C -0.015 4.015 28 C -0.011 4.011 29 O -0.319 6.319 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.044 0.956 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.115 0.885 47 H 0.102 0.898 48 H 0.061 0.939 49 H 0.098 0.902 50 H 0.115 0.885 51 H 0.125 0.875 52 H 0.064 0.936 53 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.464 18.238 -7.440 19.850 hybrid contribution -0.674 -1.755 0.734 2.018 sum -3.138 16.482 -6.707 18.069 Atomic orbital electron populations 1.21916 0.93066 1.02350 1.03570 1.23277 0.95691 0.96170 0.83356 0.88413 1.23259 0.93310 1.00948 0.99198 1.22935 1.00946 0.96339 0.95674 0.83537 1.20750 0.80055 0.86091 0.82251 1.90659 1.55254 1.65702 1.34850 1.48234 1.20614 1.25594 1.38974 1.21552 1.00050 0.83829 0.94719 1.22159 0.99708 0.97580 0.96891 1.20414 0.95413 0.88737 0.88306 1.44218 1.03556 1.46226 1.37922 1.19155 0.97844 0.98610 1.21446 0.92317 1.25445 0.99383 0.96533 1.02520 1.70254 1.30814 1.10582 1.44096 0.85643 0.79094 0.77791 0.80016 1.22704 1.22281 1.20328 1.20096 0.83065 0.91099 0.96871 1.22586 0.90251 1.00488 0.98453 1.22636 1.01490 0.96911 1.01041 1.23140 1.05584 0.99946 0.94316 1.22260 1.01056 0.96093 0.98095 1.22132 0.95886 0.95781 0.87706 1.23192 0.88815 0.96293 0.92841 1.88433 1.42834 1.65317 1.35308 0.91468 0.89009 0.93528 0.87329 0.91674 0.89425 0.91302 0.92976 0.94986 0.91212 0.94908 0.93217 0.95624 0.91709 0.89796 0.90830 0.88490 0.89771 0.93915 0.90234 0.88475 0.87503 0.93565 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.63 71.98 0.69 -1.70 16 2 C 0.07 1.25 4.07 31.35 0.13 1.37 16 3 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.13 -2.46 5.71 32.14 0.18 -2.27 16 5 C -0.14 -2.68 2.40 -10.28 -0.02 -2.70 16 6 H 0.15 1.78 7.94 -2.39 -0.02 1.76 16 7 C 0.52 14.27 6.95 87.66 0.61 14.88 16 8 O -0.58 -20.71 15.14 -3.03 -0.05 -20.76 16 9 N -0.60 -15.67 2.97 -818.96 -2.43 -18.10 16 10 C 0.12 3.56 6.43 86.36 0.56 4.12 16 11 C -0.12 -4.46 5.31 30.67 0.16 -4.30 16 12 C 0.18 6.24 2.58 45.02 0.12 6.36 16 13 N -0.60 -26.65 2.47 -677.88 -1.67 -28.33 16 14 C -0.24 -12.23 8.46 84.04 0.71 -11.52 16 15 H 0.06 3.05 6.79 -2.91 -0.02 3.03 16 16 C -0.04 -2.29 5.11 84.86 0.43 -1.86 16 17 N -0.91 -49.91 8.78 21.65 0.19 -49.72 16 18 Si 0.94 44.87 29.56 68.60 2.03 46.90 16 19 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 20 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 C 0.21 9.42 5.06 86.38 0.44 9.85 16 23 C -0.10 -4.10 4.42 -10.77 -0.05 -4.15 16 24 C -0.18 -6.79 10.25 30.59 0.31 -6.47 16 25 C -0.19 -6.41 10.18 30.62 0.31 -6.10 16 26 C -0.14 -3.93 5.30 30.66 0.16 -3.76 16 27 C 0.11 2.19 6.00 86.35 0.52 2.70 16 28 C 0.07 1.43 6.23 72.45 0.45 1.88 16 29 O -0.40 -9.53 11.04 -148.98 -1.65 -11.17 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.63 7.33 -2.39 -0.02 1.61 16 35 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.07 2.25 7.01 -2.39 -0.02 2.24 16 37 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.03 1.36 7.71 -2.39 -0.02 1.34 16 39 H 0.07 2.22 7.90 -2.39 -0.02 2.20 16 40 H 0.24 13.29 8.31 -92.70 -0.77 12.52 16 41 H 0.05 2.54 6.31 -2.39 -0.02 2.53 16 42 H 0.03 1.00 7.83 -2.39 -0.02 0.98 16 43 H 0.06 3.32 7.51 -2.39 -0.02 3.30 16 44 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 45 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 46 H 0.10 2.85 8.03 -2.39 -0.02 2.83 16 47 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 48 H 0.04 1.47 7.03 -2.39 -0.02 1.46 16 49 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 50 H 0.10 1.53 8.14 -2.39 -0.02 1.52 16 51 H 0.11 1.65 4.01 -2.38 -0.01 1.64 16 52 H 0.05 1.29 7.81 -2.39 -0.02 1.27 16 53 H 0.10 1.75 6.60 -2.38 -0.02 1.74 16 Total: -1.00 -65.22 401.18 3.01 -62.22 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.88 Total: 22.66 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 5.71 Total: -3.69 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -3.92 Total: -96.15 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -1.69 Total: -31.93 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -65.22 3.01 -62.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483816817.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.565 kcal (2) G-P(sol) polarization free energy of solvation -65.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds