Wall clock time and date at job start Tue Mar 31 2020 21:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50708 * 119.99226 * 2 1 4 4 C 1.53003 * 109.46870 * 125.00265 * 3 2 1 5 5 C 1.50702 * 109.53670 * 299.99585 * 4 3 2 6 6 O 1.21283 * 119.99562 * 239.82074 * 5 4 3 7 7 N 1.34772 * 120.00533 * 59.82683 * 5 4 3 8 8 C 1.46498 * 120.00148 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.52726 * 325.08489 * 8 7 5 10 10 C 1.53036 * 109.49480 * 85.16248 * 8 7 5 11 11 C 1.53043 * 109.53585 * 181.31612 * 10 8 7 12 12 C 1.53190 * 109.31461 * 298.63391 * 11 10 8 13 13 N 1.46931 * 108.77598 * 54.63484 * 12 11 10 14 14 C 1.36936 * 120.63056 * 126.41335 * 13 12 11 15 15 H 1.07997 * 119.99636 * 209.03877 * 14 13 12 16 16 C 1.38808 * 120.00109 * 29.03639 * 14 13 12 17 17 N 1.31625 * 119.99625 * 15.05995 * 16 14 13 18 18 Si 1.86798 * 120.00303 * 195.05562 * 16 14 13 19 19 H 1.48501 * 109.47082 * 0.02562 * 18 16 14 20 20 H 1.48490 * 109.47451 * 120.00213 * 18 16 14 21 21 H 1.48504 * 109.47126 * 240.00622 * 18 16 14 22 22 C 1.46930 * 118.73743 * 306.39537 * 13 12 11 23 23 H 1.09000 * 109.58345 * 293.67936 * 22 13 12 24 24 C 1.52998 * 109.58550 * 173.39399 * 22 13 12 25 25 C 1.53172 * 109.61973 * 60.21374 * 4 3 2 26 26 C 1.53095 * 109.16580 * 176.89064 * 25 4 3 27 27 O 1.42909 * 109.41247 * 302.40097 * 26 25 4 28 28 C 1.42899 * 114.10049 * 61.15249 * 27 26 25 29 29 C 1.53092 * 109.41448 * 298.83892 * 28 27 26 30 30 H 1.07993 * 120.00141 * 0.02562 * 1 2 3 31 31 H 1.07998 * 119.99018 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.00476 * 179.97438 * 2 1 3 33 33 H 1.08993 * 109.47181 * 5.00003 * 3 2 1 34 34 H 1.09000 * 109.46720 * 244.99529 * 3 2 1 35 35 H 0.96998 * 120.00054 * 359.97438 * 7 5 4 36 36 H 1.08997 * 109.46521 * 61.29940 * 10 8 7 37 37 H 1.09000 * 109.45292 * 301.32541 * 10 8 7 38 38 H 1.09000 * 109.49845 * 178.68384 * 11 10 8 39 39 H 1.08995 * 109.52835 * 58.60263 * 11 10 8 40 40 H 1.09003 * 109.59078 * 294.84978 * 12 11 10 41 41 H 1.09001 * 109.70863 * 174.49336 * 12 11 10 42 42 H 0.97010 * 119.99482 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.46974 * 59.99824 * 24 22 13 44 44 H 1.08996 * 109.46857 * 180.02562 * 24 22 13 45 45 H 1.09005 * 109.46875 * 299.99761 * 24 22 13 46 46 H 1.09000 * 109.52817 * 296.80276 * 25 4 3 47 47 H 1.09006 * 109.52295 * 56.99085 * 25 4 3 48 48 H 1.08993 * 109.48454 * 182.41546 * 26 25 4 49 49 H 1.09000 * 109.48766 * 62.37775 * 26 25 4 50 50 H 1.09002 * 109.47677 * 178.85970 * 28 27 26 51 51 H 1.08994 * 109.48657 * 58.83235 * 28 27 26 52 52 H 1.08994 * 109.52632 * 297.70076 * 29 28 27 53 53 H 1.08997 * 109.57023 * 177.54582 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3053 0.0000 4 6 3.0350 1.3333 1.1816 5 6 2.2653 1.1985 2.4702 6 8 2.3255 2.0745 3.3069 7 7 1.5102 0.1046 2.6930 8 6 0.7625 -0.0265 3.9460 9 1 1.3345 0.4188 4.7600 10 6 -0.5830 0.6908 3.8152 11 6 -1.3511 0.5824 5.1346 12 6 -1.6183 -0.8937 5.4455 13 7 -0.3406 -1.6191 5.4297 14 6 0.0412 -2.3831 6.5001 15 1 1.0898 -2.5232 6.7167 16 6 -0.9197 -2.9774 7.3065 17 7 -2.1659 -3.0625 6.8917 18 14 -0.4441 -3.6564 8.9805 19 1 1.0067 -3.4375 9.2095 20 1 -1.2219 -2.9600 10.0364 21 1 -0.7389 -5.1112 9.0265 22 6 0.5193 -1.5095 4.2434 23 1 0.0281 -1.9794 3.3914 24 6 1.8555 -2.2045 4.5126 25 6 4.0308 0.1762 1.0562 26 6 5.0448 0.2596 2.2002 27 8 5.7033 1.5273 2.1598 28 6 4.8275 2.6451 2.3198 29 6 3.8049 2.6575 1.1806 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5398 -0.9354 -0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3584 2.1317 0.0896 34 1 2.6212 1.4027 -0.9314 35 1 1.4619 -0.5958 2.0238 36 1 -1.1648 0.2291 3.0175 37 1 -0.4129 1.7413 3.5794 38 1 -2.2991 1.1134 5.0483 39 1 -0.7597 1.0220 5.9376 40 1 -2.2849 -1.3113 4.6909 41 1 -2.0780 -0.9846 6.4296 42 1 -2.8373 -3.4782 7.4551 43 1 1.6792 -3.2566 4.7364 44 1 2.4920 -2.1217 3.6317 45 1 2.3473 -1.7299 5.3617 46 1 3.4963 -0.7721 1.1116 47 1 4.5522 0.2462 0.1016 48 1 5.7815 -0.5363 2.0917 49 1 4.5277 0.1489 3.1533 50 1 5.4077 3.5676 2.2975 51 1 4.3074 2.5658 3.2744 52 1 4.3216 2.7777 0.2285 53 1 3.1086 3.4838 1.3240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486186395.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:15 Heat of formation + Delta-G solvation = -68.270263 kcal Electronic energy + Delta-G solvation = -32341.040754 eV Core-core repulsion = 28405.574126 eV Total energy + Delta-G solvation = -3935.466628 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.12344 -39.99579 -38.71669 -37.08262 -35.85582 -34.20572 -33.69162 -33.36185 -32.04434 -30.84654 -28.65298 -27.89962 -26.89106 -25.04496 -24.70832 -23.76790 -22.62289 -22.31960 -21.24775 -20.60545 -20.23793 -18.29400 -17.72328 -17.41812 -17.03657 -16.94753 -16.67748 -16.18849 -15.94097 -15.63271 -15.59266 -15.42531 -15.02504 -14.95657 -14.78051 -14.52855 -14.30806 -13.94735 -13.68482 -13.36384 -13.31688 -13.20120 -13.10250 -12.84649 -12.72062 -12.52541 -12.50624 -12.37492 -12.32119 -12.12984 -12.00074 -11.82773 -11.77470 -11.63211 -11.54976 -11.34418 -11.14726 -10.64436 -10.53931 -10.40230 -10.13208 -9.83030 -8.65526 -7.85915 -5.31719 1.35195 1.44634 1.48084 1.56821 1.72118 2.21363 2.53739 2.96296 3.29779 3.48062 3.56398 3.69077 3.76923 3.88381 4.00169 4.02757 4.08182 4.21121 4.23223 4.27488 4.34318 4.35033 4.51283 4.56637 4.60918 4.64250 4.69059 4.75068 4.76109 4.83533 4.86895 4.90222 4.90453 5.02630 5.02825 5.05696 5.09439 5.12517 5.15472 5.19331 5.26641 5.30156 5.43723 5.51774 5.63043 5.69857 5.75529 5.76957 5.87209 6.24698 6.41442 6.65506 7.16101 7.35012 7.86487 8.37771 9.20896 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015813 B = 0.003660 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.260465 B = 7648.271203 C = 8331.821804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.177 4.177 3 C -0.073 4.073 4 C -0.069 4.069 5 C 0.519 3.481 6 O -0.581 6.581 7 N -0.701 5.701 8 C 0.147 3.853 9 H 0.052 0.948 10 C -0.104 4.104 11 C -0.131 4.131 12 C 0.177 3.823 13 N -0.599 5.599 14 C -0.252 4.252 15 H 0.071 0.929 16 C -0.047 4.047 17 N -0.932 5.932 18 Si 0.959 3.041 19 H -0.269 1.269 20 H -0.294 1.294 21 H -0.291 1.291 22 C 0.167 3.833 23 H 0.031 0.969 24 C -0.128 4.128 25 C -0.138 4.138 26 C 0.051 3.949 27 O -0.396 6.396 28 C 0.047 3.953 29 C -0.124 4.124 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.131 0.869 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.407 0.593 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.004 0.996 41 H 0.055 0.945 42 H 0.248 0.752 43 H 0.050 0.950 44 H 0.074 0.926 45 H 0.038 0.962 46 H 0.092 0.908 47 H 0.109 0.891 48 H 0.115 0.885 49 H 0.024 0.976 50 H 0.102 0.898 51 H 0.045 0.955 52 H 0.101 0.899 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.714 7.676 -18.484 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.194 4.194 3 C -0.110 4.110 4 C -0.072 4.072 5 C 0.306 3.694 6 O -0.461 6.461 7 N -0.354 5.354 8 C 0.041 3.959 9 H 0.070 0.930 10 C -0.143 4.143 11 C -0.170 4.170 12 C 0.051 3.949 13 N -0.323 5.323 14 C -0.382 4.382 15 H 0.089 0.911 16 C -0.242 4.242 17 N -0.579 5.579 18 Si 0.788 3.212 19 H -0.194 1.194 20 H -0.221 1.221 21 H -0.218 1.218 22 C 0.060 3.940 23 H 0.049 0.951 24 C -0.185 4.185 25 C -0.175 4.175 26 C -0.026 4.026 27 O -0.315 6.315 28 C -0.030 4.030 29 C -0.162 4.162 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.149 0.851 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.247 0.753 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.022 0.978 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.057 0.943 46 H 0.111 0.889 47 H 0.127 0.873 48 H 0.133 0.867 49 H 0.043 0.957 50 H 0.121 0.879 51 H 0.063 0.937 52 H 0.119 0.881 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.835 8.205 -17.826 22.416 hybrid contribution -0.844 -0.721 1.308 1.715 sum 9.992 7.484 -16.518 20.705 Atomic orbital electron populations 1.24032 0.96341 1.02314 0.99127 1.23075 0.96066 0.99007 1.01300 1.20765 0.97117 0.95996 0.97153 1.20925 0.95631 0.98454 0.92161 1.21030 0.78579 0.81072 0.88691 1.90635 1.65383 1.41721 1.48342 1.46252 1.47231 1.22155 1.19808 1.21237 0.91688 0.97107 0.85908 0.93007 1.21628 0.95743 0.99371 0.97518 1.22029 0.99631 0.98468 0.96896 1.20629 0.86826 0.87926 0.99527 1.44260 1.19563 1.53713 1.14778 1.19466 0.92366 1.22766 1.03586 0.91135 1.25717 0.96262 0.99526 1.02724 1.70168 1.02395 1.48291 1.37031 0.85333 0.77889 0.77326 0.80685 1.19376 1.22066 1.21803 1.20689 0.91944 0.91721 0.89666 0.95114 1.21732 0.95703 1.00253 1.00832 1.22336 0.96339 0.97623 1.01218 1.22729 0.96682 0.86298 0.96877 1.87867 1.35089 1.14626 1.93929 1.22817 0.92361 0.89525 0.98268 1.22005 0.97886 0.95760 1.00529 0.89037 0.87820 0.85145 0.91598 0.87165 0.75273 0.91603 0.93011 0.91118 0.94024 0.97793 0.92649 0.94254 0.93105 0.90757 0.94294 0.88926 0.87270 0.86695 0.95723 0.87945 0.93677 0.88060 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 13.91 67.78 0.94 -1.99 16 2 C -0.18 -2.45 5.82 25.65 0.15 -2.30 16 3 C -0.07 -1.01 4.73 29.85 0.14 -0.87 16 4 C -0.07 -1.25 0.51 -52.81 -0.03 -1.28 16 5 C 0.52 14.01 5.08 87.66 0.45 14.45 16 6 O -0.58 -20.68 13.50 -3.04 -0.04 -20.72 16 7 N -0.70 -18.58 3.80 -442.17 -1.68 -20.26 16 8 C 0.15 5.15 1.99 45.07 0.09 5.24 16 9 H 0.05 2.18 7.58 -2.39 -0.02 2.16 16 10 C -0.10 -3.61 5.46 30.62 0.17 -3.44 16 11 C -0.13 -5.16 6.08 30.67 0.19 -4.97 16 12 C 0.18 8.47 5.29 86.36 0.46 8.93 16 13 N -0.60 -29.18 2.99 -675.21 -2.02 -31.20 16 14 C -0.25 -13.45 8.60 84.03 0.72 -12.72 16 15 H 0.07 3.70 6.21 -2.91 -0.02 3.68 16 16 C -0.05 -2.58 4.96 84.86 0.42 -2.16 16 17 N -0.93 -54.20 11.14 21.65 0.24 -53.96 16 18 Si 0.96 44.79 29.58 68.60 2.03 46.82 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 C 0.17 6.47 3.03 44.97 0.14 6.61 16 23 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 24 C -0.13 -4.52 7.83 71.98 0.56 -3.96 16 25 C -0.14 -2.05 4.52 30.68 0.14 -1.91 16 26 C 0.05 1.03 6.62 72.01 0.48 1.51 16 27 O -0.40 -9.48 10.77 -148.98 -1.60 -11.09 16 28 C 0.05 1.09 6.55 72.01 0.47 1.56 16 29 C -0.12 -2.31 4.56 30.68 0.14 -2.17 16 30 H 0.09 1.56 7.84 -2.91 -0.02 1.54 16 31 H 0.10 1.64 8.06 -2.91 -0.02 1.61 16 32 H 0.13 1.39 6.77 -2.91 -0.02 1.37 16 33 H 0.07 1.04 7.79 -2.39 -0.02 1.02 16 34 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.41 8.85 5.00 -92.71 -0.46 8.38 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.06 3.03 6.06 -2.39 -0.01 3.02 16 42 H 0.25 14.04 8.31 -92.70 -0.77 13.27 16 43 H 0.05 1.93 7.62 -2.39 -0.02 1.91 16 44 H 0.07 2.03 7.80 -2.39 -0.02 2.01 16 45 H 0.04 1.49 7.45 -2.38 -0.02 1.47 16 46 H 0.09 1.14 6.11 -2.39 -0.01 1.13 16 47 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 48 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 49 H 0.02 0.63 7.38 -2.39 -0.02 0.61 16 50 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 51 H 0.04 1.36 5.80 -2.39 -0.01 1.35 16 52 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 53 H 0.07 1.47 8.03 -2.39 -0.02 1.45 16 Total: -1.00 -67.44 392.00 2.96 -64.48 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.42 Total: 25.40 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 5.62 Total: 0.53 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -3.46 Total: -105.42 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -1.64 Total: -31.81 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -67.44 2.96 -64.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486186395.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.793 kcal (2) G-P(sol) polarization free energy of solvation -67.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds