Wall clock time and date at job start Tue Mar 31 2020 21:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99474 * 2 1 4 4 C 1.53007 * 109.46998 * 128.00596 * 3 2 1 5 5 C 1.50697 * 109.54223 * 293.80657 * 4 3 2 6 6 O 1.21278 * 120.00508 * 250.95108 * 5 4 3 7 7 N 1.34784 * 119.99553 * 70.95406 * 5 4 3 8 8 C 1.46502 * 119.99635 * 174.87848 * 7 5 4 9 9 H 1.08998 * 109.52559 * 329.43739 * 8 7 5 10 10 C 1.53046 * 109.49267 * 89.51753 * 8 7 5 11 11 C 1.53041 * 109.52844 * 58.57820 * 10 8 7 12 12 C 1.53194 * 109.31171 * 61.36893 * 11 10 8 13 13 N 1.46920 * 108.77548 * 305.36533 * 12 11 10 14 14 C 1.36941 * 120.62885 * 233.62975 * 13 12 11 15 15 H 1.08003 * 120.00159 * 143.21722 * 14 13 12 16 16 C 1.38817 * 119.99969 * 323.21525 * 14 13 12 17 17 N 1.31614 * 120.00088 * 359.79064 * 16 14 13 18 18 Si 1.86802 * 119.99860 * 179.78357 * 16 14 13 19 19 H 1.48506 * 109.46664 * 60.00357 * 18 16 14 20 20 H 1.48492 * 109.46972 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47246 * 300.00725 * 18 16 14 22 22 C 1.46919 * 118.74222 * 53.60978 * 13 12 11 23 23 H 1.09001 * 109.58957 * 66.17986 * 22 13 12 24 24 C 1.53001 * 109.59028 * 186.45943 * 22 13 12 25 25 C 1.53174 * 109.54168 * 53.98878 * 4 3 2 26 26 C 1.53288 * 109.06085 * 176.85386 * 25 4 3 27 27 O 1.42903 * 109.45780 * 302.44448 * 26 25 4 28 28 C 1.42902 * 114.10168 * 61.15727 * 27 26 25 29 29 C 1.53094 * 109.41376 * 298.84283 * 28 27 26 30 30 H 1.08000 * 120.00440 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99245 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.00440 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.47500 * 8.00411 * 3 2 1 34 34 H 1.09000 * 109.47280 * 248.00037 * 3 2 1 35 35 H 0.97000 * 119.99930 * 354.88571 * 7 5 4 36 36 H 1.08999 * 109.45869 * 298.55704 * 10 8 7 37 37 H 1.09006 * 109.45249 * 178.59100 * 10 8 7 38 38 H 1.08998 * 109.49630 * 181.31847 * 11 10 8 39 39 H 1.08994 * 109.49561 * 301.41927 * 11 10 8 40 40 H 1.09001 * 109.58563 * 65.15072 * 12 11 10 41 41 H 1.09005 * 109.58359 * 185.57519 * 12 11 10 42 42 H 0.96998 * 120.00661 * 179.97438 * 17 16 14 43 43 H 1.09003 * 109.46611 * 60.00013 * 24 22 13 44 44 H 1.08996 * 109.47291 * 179.97438 * 24 22 13 45 45 H 1.09001 * 109.47114 * 300.00375 * 24 22 13 46 46 H 1.09003 * 109.52243 * 296.83940 * 25 4 3 47 47 H 1.08995 * 109.52350 * 57.03313 * 25 4 3 48 48 H 1.08997 * 109.45401 * 182.45000 * 26 25 4 49 49 H 1.08999 * 109.46751 * 62.44664 * 26 25 4 50 50 H 1.08997 * 109.47979 * 178.85693 * 28 27 26 51 51 H 1.09001 * 109.48390 * 58.82697 * 28 27 26 52 52 H 1.08999 * 109.52024 * 297.69631 * 29 28 27 53 53 H 1.08996 * 109.51747 * 177.51040 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0876 1.3028 1.1367 5 6 2.3701 1.2869 2.4618 6 8 2.3759 2.2740 3.1665 7 7 1.7218 0.1757 2.8637 8 6 1.1201 0.1212 4.1983 9 1 1.6982 0.7403 4.8842 10 6 -0.3185 0.6392 4.1314 11 6 -1.1224 -0.2093 3.1435 12 6 -1.1535 -1.6612 3.6311 13 7 0.2268 -2.1205 3.8372 14 6 0.6776 -3.2664 3.2380 15 1 1.6927 -3.3216 2.8733 16 6 -0.1701 -4.3569 3.0994 17 7 -1.4058 -4.2910 3.5476 18 14 0.4431 -5.9178 2.2766 19 1 1.5995 -6.4566 3.0368 20 1 -0.6471 -6.9258 2.2526 21 1 0.8643 -5.6117 0.8859 22 6 1.1143 -1.3269 4.6981 23 1 0.7506 -1.3578 5.7252 24 6 2.5322 -1.8987 4.6388 25 6 3.9783 0.0620 1.0212 26 6 5.0492 0.1107 2.1169 27 8 5.8052 1.3167 1.9902 28 6 5.0309 2.5089 2.1358 29 6 3.9610 2.5576 1.0419 30 1 -0.5401 0.9353 -0.0004 31 1 -0.5399 -0.9354 0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3637 2.1286 0.1431 34 1 2.5784 1.4274 -0.9528 35 1 1.6539 -0.5879 2.2694 36 1 -0.3155 1.6776 3.7998 37 1 -0.7738 0.5750 5.1198 38 1 -2.1405 0.1746 3.0787 39 1 -0.6532 -0.1655 2.1607 40 1 -1.7022 -1.7193 4.5712 41 1 -1.6392 -2.2876 2.8828 42 1 -1.9983 -5.0529 3.4505 43 1 2.8959 -1.8623 3.6119 44 1 3.1890 -1.3084 5.2776 45 1 2.5219 -2.9325 4.9841 46 1 3.3708 -0.8350 1.1423 47 1 4.4588 0.0483 0.0430 48 1 5.7134 -0.7473 2.0137 49 1 4.5694 0.0835 3.0952 50 1 5.6821 3.3784 2.0464 51 1 4.5508 2.5134 3.1144 52 1 4.4413 2.5943 0.0641 53 1 3.3413 3.4439 1.1778 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486186398.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:19 Heat of formation + Delta-G solvation = -67.960655 kcal Electronic energy + Delta-G solvation = -33391.668402 eV Core-core repulsion = 29456.215199 eV Total energy + Delta-G solvation = -3935.453202 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.09477 -40.02282 -38.63201 -36.97809 -35.57377 -34.05241 -33.61783 -33.28583 -31.98451 -30.95814 -28.64428 -27.89987 -26.81319 -24.94017 -24.70694 -23.70384 -22.93459 -22.31080 -20.91280 -20.31990 -20.06047 -18.22098 -17.85332 -17.26795 -16.96938 -16.91878 -16.54648 -16.21661 -15.93353 -15.67060 -15.58036 -15.13137 -15.07921 -14.92952 -14.57228 -14.50945 -14.20585 -13.91535 -13.63861 -13.50280 -13.25708 -13.11076 -12.95186 -12.76751 -12.71306 -12.47650 -12.44546 -12.40670 -12.33831 -12.18873 -12.11120 -11.91765 -11.61729 -11.45853 -11.37275 -11.26427 -11.05002 -10.61749 -10.46200 -10.39999 -10.02916 -9.79358 -8.44681 -7.78432 -5.34214 1.38282 1.50666 1.53015 1.57443 1.76859 2.38323 2.54318 2.96652 3.39135 3.50535 3.63475 3.66714 3.78411 3.97442 4.03336 4.10237 4.11428 4.23309 4.25320 4.27829 4.34207 4.44649 4.54762 4.59204 4.64935 4.69132 4.71769 4.77672 4.79100 4.83871 4.90091 4.95839 4.99611 5.02264 5.05681 5.09347 5.11156 5.15008 5.19220 5.24631 5.27085 5.38581 5.47564 5.64579 5.73063 5.77119 5.79183 5.88681 5.90845 6.25004 6.52340 6.77765 7.25622 7.39501 7.91432 8.49167 9.26607 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.004847 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.475726 B = 5775.259309 C = 6093.746112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.172 4.172 3 C -0.069 4.069 4 C -0.070 4.070 5 C 0.519 3.481 6 O -0.582 6.582 7 N -0.690 5.690 8 C 0.141 3.859 9 H 0.073 0.927 10 C -0.113 4.113 11 C -0.139 4.139 12 C 0.183 3.817 13 N -0.592 5.592 14 C -0.245 4.245 15 H 0.074 0.926 16 C -0.038 4.038 17 N -0.933 5.933 18 Si 0.953 3.047 19 H -0.280 1.280 20 H -0.304 1.304 21 H -0.273 1.273 22 C 0.156 3.844 23 H 0.024 0.976 24 C -0.125 4.125 25 C -0.142 4.142 26 C 0.055 3.945 27 O -0.393 6.393 28 C 0.052 3.948 29 C -0.124 4.124 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.408 0.592 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.075 0.925 40 H -0.014 1.014 41 H 0.060 0.940 42 H 0.246 0.754 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.079 0.921 47 H 0.103 0.897 48 H 0.111 0.889 49 H 0.033 0.967 50 H 0.108 0.892 51 H 0.041 0.959 52 H 0.099 0.901 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.567 11.185 -7.545 16.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.189 4.189 3 C -0.106 4.106 4 C -0.073 4.073 5 C 0.307 3.693 6 O -0.463 6.463 7 N -0.342 5.342 8 C 0.034 3.966 9 H 0.091 0.909 10 C -0.152 4.152 11 C -0.178 4.178 12 C 0.058 3.942 13 N -0.316 5.316 14 C -0.375 4.375 15 H 0.092 0.908 16 C -0.234 4.234 17 N -0.578 5.578 18 Si 0.782 3.218 19 H -0.206 1.206 20 H -0.231 1.231 21 H -0.198 1.198 22 C 0.050 3.950 23 H 0.042 0.958 24 C -0.182 4.182 25 C -0.179 4.179 26 C -0.021 4.021 27 O -0.312 6.312 28 C -0.024 4.024 29 C -0.161 4.161 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.133 0.867 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.246 0.754 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.004 0.996 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.098 0.902 47 H 0.122 0.878 48 H 0.129 0.871 49 H 0.051 0.949 50 H 0.126 0.874 51 H 0.060 0.940 52 H 0.117 0.883 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.652 11.712 -7.060 16.739 hybrid contribution -0.954 -1.564 0.037 1.833 sum 8.698 10.148 -7.024 15.099 Atomic orbital electron populations 1.23836 0.96364 1.01651 0.99474 1.23007 0.95979 0.98713 1.01244 1.20718 0.96562 0.95432 0.97926 1.20900 0.95789 0.98381 0.92257 1.20862 0.78126 0.82306 0.88046 1.90607 1.63639 1.34645 1.57437 1.46044 1.54063 1.17257 1.16787 1.21292 0.93275 0.97419 0.84645 0.90884 1.21685 0.95543 0.98310 0.99658 1.22200 0.98853 0.96819 0.99955 1.20564 0.85659 0.91225 0.96800 1.44155 1.08785 1.25272 1.53368 1.19276 0.97947 0.89671 1.30652 0.90801 1.25948 0.96845 0.99887 1.00724 1.70092 1.06499 1.30408 1.50835 0.85569 0.76878 0.80429 0.78887 1.20603 1.23101 1.19847 1.20839 0.92041 0.89476 0.92666 0.95792 1.21676 0.94663 1.00377 1.01517 1.22378 0.97119 0.96642 1.01790 1.22710 0.94581 0.87914 0.96941 1.87877 1.35824 1.14254 1.93293 1.22737 0.93895 0.87797 0.97962 1.22015 0.96839 0.96413 1.00869 0.88454 0.89260 0.86707 0.91489 0.87379 0.75357 0.92981 0.92274 0.92811 0.90635 0.99566 0.92197 0.94467 0.92404 0.92322 0.93311 0.90210 0.87849 0.87097 0.94856 0.87375 0.94049 0.88296 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.47 11.67 67.78 0.79 -3.68 16 2 C -0.17 -3.92 6.37 25.65 0.16 -3.76 16 3 C -0.07 -1.36 4.72 29.85 0.14 -1.22 16 4 C -0.07 -1.56 0.50 -52.81 -0.03 -1.59 16 5 C 0.52 15.26 4.87 87.65 0.43 15.68 16 6 O -0.58 -20.47 13.97 -3.02 -0.04 -20.51 16 7 N -0.69 -21.16 2.79 -442.15 -1.23 -22.39 16 8 C 0.14 4.81 2.36 45.07 0.11 4.91 16 9 H 0.07 2.55 7.52 -2.39 -0.02 2.54 16 10 C -0.11 -3.91 5.61 30.62 0.17 -3.74 16 11 C -0.14 -5.09 5.93 30.67 0.18 -4.91 16 12 C 0.18 8.29 5.22 86.36 0.45 8.74 16 13 N -0.59 -26.22 2.62 -675.23 -1.77 -27.99 16 14 C -0.25 -11.71 8.37 84.03 0.70 -11.00 16 15 H 0.07 3.34 6.44 -2.91 -0.02 3.32 16 16 C -0.04 -1.95 5.24 84.86 0.44 -1.50 16 17 N -0.93 -51.80 10.91 21.65 0.24 -51.57 16 18 Si 0.95 41.64 29.55 68.60 2.03 43.67 16 19 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 20 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 C 0.16 5.99 3.21 44.98 0.14 6.13 16 23 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 24 C -0.12 -4.26 7.81 71.98 0.56 -3.70 16 25 C -0.14 -2.89 4.30 30.75 0.13 -2.76 16 26 C 0.06 1.26 6.62 72.08 0.48 1.74 16 27 O -0.39 -9.76 10.77 -148.98 -1.60 -11.36 16 28 C 0.05 1.22 6.56 72.01 0.47 1.69 16 29 C -0.12 -2.53 4.56 30.69 0.14 -2.39 16 30 H 0.10 2.32 7.85 -2.91 -0.02 2.30 16 31 H 0.09 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.12 2.64 6.62 -2.91 -0.02 2.62 16 33 H 0.07 1.40 7.80 -2.39 -0.02 1.39 16 34 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.41 12.83 4.96 -92.71 -0.46 12.37 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.06 2.03 8.14 -2.38 -0.02 2.02 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.08 2.63 4.55 -2.39 -0.01 2.62 16 40 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 41 H 0.06 3.08 6.19 -2.38 -0.01 3.07 16 42 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 43 H 0.06 1.89 6.49 -2.39 -0.02 1.87 16 44 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.05 1.81 7.68 -2.39 -0.02 1.79 16 46 H 0.08 1.72 5.45 -2.39 -0.01 1.71 16 47 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.03 0.89 7.38 -2.39 -0.02 0.87 16 50 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 51 H 0.04 1.19 6.22 -2.39 -0.01 1.17 16 52 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 53 H 0.08 1.67 7.88 -2.39 -0.02 1.65 16 Total: -1.00 -58.89 384.83 3.53 -55.36 By element: Atomic # 1 Polarization: 35.70 SS G_CDS: 0.43 Total: 36.13 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 5.48 Total: -1.34 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -2.77 Total: -101.95 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -1.65 Total: -31.87 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -58.89 3.53 -55.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486186398.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.601 kcal (2) G-P(sol) polarization free energy of solvation -58.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds