Wall clock time and date at job start Tue Mar 31 2020 21:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 120.00102 * 2 1 4 4 C 1.53000 * 109.47040 * 124.06634 * 3 2 1 5 5 C 1.50705 * 109.54308 * 183.78587 * 4 3 2 6 6 O 1.21282 * 119.99840 * 113.05664 * 5 4 3 7 7 N 1.34778 * 119.99965 * 293.05885 * 5 4 3 8 8 C 1.46498 * 119.99512 * 174.89248 * 7 5 4 9 9 H 1.08996 * 109.49931 * 34.93825 * 8 7 5 10 10 C 1.53040 * 109.49543 * 274.83235 * 8 7 5 11 11 C 1.53041 * 109.54116 * 301.41872 * 10 8 7 12 12 C 1.53198 * 109.31083 * 298.63418 * 11 10 8 13 13 N 1.46925 * 108.77359 * 54.63743 * 12 11 10 14 14 C 1.36939 * 120.63291 * 126.41132 * 13 12 11 15 15 H 1.07999 * 120.00040 * 211.57026 * 14 13 12 16 16 C 1.38819 * 119.99596 * 31.56932 * 14 13 12 17 17 N 1.31618 * 120.00128 * 13.38767 * 16 14 13 18 18 Si 1.86800 * 119.99900 * 193.38345 * 16 14 13 19 19 H 1.48496 * 109.47333 * 60.00012 * 18 16 14 20 20 H 1.48491 * 109.47078 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46997 * 300.00052 * 18 16 14 22 22 C 1.46926 * 118.73848 * 306.38733 * 13 12 11 23 23 H 1.09003 * 109.58550 * 293.82060 * 22 13 12 24 24 C 1.53000 * 109.70354 * 173.46814 * 22 13 12 25 25 C 1.53182 * 109.54444 * 63.52089 * 4 3 2 26 26 C 1.53095 * 109.16219 * 183.15415 * 25 4 3 27 27 O 1.42906 * 109.41609 * 57.60732 * 26 25 4 28 28 C 1.42904 * 114.09657 * 298.83968 * 27 26 25 29 29 C 1.53089 * 109.41435 * 61.16045 * 28 27 26 30 30 H 1.08000 * 120.00156 * 179.97438 * 1 2 3 31 31 H 1.07997 * 119.99928 * 359.72533 * 1 2 3 32 32 H 1.08003 * 119.99680 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47019 * 244.06593 * 3 2 1 34 34 H 1.09000 * 109.47471 * 4.06481 * 3 2 1 35 35 H 0.96999 * 119.99762 * 354.89007 * 7 5 4 36 36 H 1.08997 * 109.45500 * 61.44099 * 10 8 7 37 37 H 1.08999 * 109.45503 * 181.39793 * 10 8 7 38 38 H 1.08994 * 109.49450 * 178.68875 * 11 10 8 39 39 H 1.08995 * 109.49639 * 58.58726 * 11 10 8 40 40 H 1.08999 * 109.58501 * 294.84741 * 12 11 10 41 41 H 1.08998 * 109.70040 * 174.49074 * 12 11 10 42 42 H 0.97001 * 120.00281 * 180.02562 * 17 16 14 43 43 H 1.08996 * 109.47089 * 300.64342 * 24 22 13 44 44 H 1.09010 * 109.47139 * 60.63945 * 24 22 13 45 45 H 1.09000 * 109.47505 * 180.63878 * 24 22 13 46 46 H 1.09003 * 109.51821 * 303.05639 * 25 4 3 47 47 H 1.08997 * 109.52407 * 63.24605 * 25 4 3 48 48 H 1.09000 * 109.48133 * 297.62269 * 26 25 4 49 49 H 1.08995 * 109.47611 * 177.58729 * 26 25 4 50 50 H 1.08997 * 109.48124 * 301.17829 * 28 27 26 51 51 H 1.08999 * 109.48799 * 181.14667 * 28 27 26 52 52 H 1.08998 * 109.52375 * 182.48504 * 29 28 27 53 53 H 1.09003 * 109.57841 * 62.32295 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0183 1.3427 1.1950 5 6 3.7045 2.6833 1.2499 6 8 3.4750 3.4449 2.1654 7 7 4.5733 3.0358 0.2817 8 6 5.1549 4.3803 0.2737 9 1 5.3125 4.7147 1.2990 10 6 4.2031 5.3444 -0.4383 11 6 3.9555 4.8569 -1.8677 12 6 5.2827 4.8349 -2.6325 13 7 6.2498 4.0260 -1.8781 14 6 6.9100 2.9875 -2.4790 15 1 7.1934 2.1208 -1.9003 16 6 7.2148 3.0489 -3.8319 17 7 7.1139 4.1911 -4.4781 18 14 7.7685 1.5105 -4.7353 19 1 6.7038 0.4785 -4.6539 20 1 8.0312 1.8401 -6.1591 21 1 9.0111 0.9899 -4.1107 22 6 6.4957 4.3529 -0.4670 23 1 6.9724 5.3305 -0.3960 24 6 7.4049 3.2924 0.1573 25 6 4.0657 0.2344 1.0491 26 6 4.9674 0.2293 2.2863 27 8 4.1676 0.0466 3.4564 28 6 3.2021 1.0782 3.6701 29 6 2.2294 1.1174 2.4885 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 0.0045 32 1 1.8500 -0.9354 -0.0004 33 1 2.6344 1.3949 -0.9242 34 1 1.3575 2.1323 0.0728 35 1 4.8134 2.3993 -0.4097 36 1 3.2567 5.3844 0.1009 37 1 4.6476 6.3392 -0.4657 38 1 3.2594 5.5311 -2.3665 39 1 3.5340 3.8521 -1.8415 40 1 5.6604 5.8519 -2.7381 41 1 5.1310 4.3971 -3.6191 42 1 7.3265 4.2339 -5.4235 43 1 6.9287 2.3150 0.0808 44 1 8.3582 3.2745 -0.3710 45 1 7.5756 3.5323 1.2068 46 1 3.5655 -0.7298 0.9590 47 1 4.6685 0.4177 0.1597 48 1 5.4980 1.1791 2.3534 49 1 5.6877 -0.5849 2.2076 50 1 3.7095 2.0391 3.7552 51 1 2.6507 0.8757 4.5882 52 1 1.5190 1.9322 2.6284 53 1 1.6912 0.1715 2.4269 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486186402.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:23 Heat of formation + Delta-G solvation = -68.971393 kcal Electronic energy + Delta-G solvation = -32677.728576 eV Core-core repulsion = 28742.231545 eV Total energy + Delta-G solvation = -3935.497031 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.07580 -40.11040 -38.64902 -36.99814 -35.61562 -34.11940 -33.58247 -33.21541 -31.99652 -30.98958 -28.76789 -27.87543 -26.82207 -25.04638 -24.61783 -23.76251 -22.95841 -22.35284 -20.99174 -20.31544 -19.92454 -18.25058 -17.83357 -17.26641 -17.01864 -16.97588 -16.57019 -16.24118 -15.82025 -15.74517 -15.60904 -15.46383 -15.06362 -14.95928 -14.57221 -14.47512 -14.21619 -14.00635 -13.57543 -13.44655 -13.24271 -13.18995 -12.94339 -12.84713 -12.69657 -12.68209 -12.44858 -12.37028 -12.26961 -12.17204 -11.96640 -11.92012 -11.66385 -11.56521 -11.42406 -11.33426 -11.02458 -10.67799 -10.47041 -10.37120 -10.10855 -9.84619 -8.55856 -7.79660 -5.28814 1.38532 1.51988 1.53206 1.58519 1.74832 2.32480 2.55270 2.95853 3.37387 3.51590 3.58820 3.60759 3.76026 3.95720 4.03269 4.07106 4.08880 4.20843 4.23239 4.28413 4.32311 4.39849 4.55946 4.58432 4.64875 4.66280 4.66914 4.69205 4.78331 4.80802 4.91760 4.94495 4.97597 4.99816 5.04359 5.06206 5.10911 5.12217 5.16122 5.23582 5.26523 5.35209 5.46286 5.56310 5.68027 5.76407 5.78039 5.81547 5.91637 6.24294 6.47078 6.71112 7.21939 7.33706 7.91003 8.45854 9.26626 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011873 B = 0.004374 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.692632 B = 6399.371837 C = 6692.264714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.152 4.152 3 C -0.076 4.076 4 C -0.066 4.066 5 C 0.520 3.480 6 O -0.578 6.578 7 N -0.694 5.694 8 C 0.143 3.857 9 H 0.076 0.924 10 C -0.114 4.114 11 C -0.124 4.124 12 C 0.181 3.819 13 N -0.593 5.593 14 C -0.247 4.247 15 H 0.079 0.921 16 C -0.045 4.045 17 N -0.935 5.935 18 Si 0.956 3.044 19 H -0.274 1.274 20 H -0.305 1.305 21 H -0.278 1.278 22 C 0.157 3.843 23 H 0.026 0.974 24 C -0.126 4.126 25 C -0.143 4.143 26 C 0.056 3.944 27 O -0.394 6.394 28 C 0.052 3.948 29 C -0.118 4.118 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.407 0.593 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.055 0.945 40 H -0.008 1.008 41 H 0.054 0.946 42 H 0.246 0.754 43 H 0.058 0.942 44 H 0.046 0.954 45 H 0.060 0.940 46 H 0.101 0.899 47 H 0.082 0.918 48 H 0.034 0.966 49 H 0.113 0.887 50 H 0.046 0.954 51 H 0.105 0.895 52 H 0.071 0.929 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.350 -8.331 11.294 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.170 4.170 3 C -0.114 4.114 4 C -0.069 4.069 5 C 0.307 3.693 6 O -0.458 6.458 7 N -0.344 5.344 8 C 0.036 3.964 9 H 0.094 0.906 10 C -0.152 4.152 11 C -0.163 4.163 12 C 0.055 3.945 13 N -0.317 5.317 14 C -0.377 4.377 15 H 0.097 0.903 16 C -0.241 4.241 17 N -0.581 5.581 18 Si 0.786 3.214 19 H -0.200 1.200 20 H -0.232 1.232 21 H -0.204 1.204 22 C 0.050 3.950 23 H 0.044 0.956 24 C -0.183 4.183 25 C -0.180 4.180 26 C -0.020 4.020 27 O -0.313 6.313 28 C -0.024 4.024 29 C -0.156 4.156 30 H 0.130 0.870 31 H 0.112 0.888 32 H 0.140 0.860 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.244 0.756 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.010 0.990 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.120 0.880 47 H 0.100 0.900 48 H 0.053 0.947 49 H 0.131 0.869 50 H 0.065 0.935 51 H 0.123 0.877 52 H 0.090 0.910 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.425 -7.897 11.877 17.667 hybrid contribution 0.662 0.014 -1.577 1.710 sum -9.763 -7.884 10.300 16.234 Atomic orbital electron populations 1.23999 0.95761 1.02498 1.00388 1.22829 0.96134 0.97641 1.00387 1.20687 0.97466 0.97005 0.96222 1.20815 0.96336 0.91717 0.98051 1.20828 0.78736 0.88675 0.81016 1.90609 1.64827 1.54916 1.35457 1.45961 1.44362 1.15110 1.28998 1.21281 0.93812 0.82599 0.98715 0.90609 1.21704 0.98953 0.98535 0.96053 1.21938 0.98311 1.00482 0.95605 1.20541 0.86836 0.92423 0.94657 1.44268 1.45474 1.35601 1.06363 1.19398 1.30498 0.95491 0.92305 0.90338 1.25809 1.00360 0.98301 0.99601 1.70156 1.53993 1.25056 1.08938 0.85513 0.78575 0.80319 0.77030 1.19976 1.23179 1.20424 1.20821 0.92252 0.96817 0.85076 0.95635 1.21678 0.99062 0.98714 0.98854 1.22341 0.97214 0.99309 0.99165 1.22669 0.93022 1.01871 0.84460 1.87873 1.50488 1.48276 1.44652 1.22757 0.90208 0.90899 0.98564 1.21966 0.97925 1.03188 0.92542 0.86956 0.88827 0.85970 0.90646 0.91760 0.75602 0.92740 0.91819 0.92196 0.92609 0.99015 0.92790 0.94528 0.92276 0.93477 0.92148 0.88039 0.89959 0.94741 0.86900 0.93548 0.87690 0.91031 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.00 14.32 67.78 0.97 -2.03 16 2 C -0.15 -2.64 7.48 25.64 0.19 -2.45 16 3 C -0.08 -1.62 4.72 29.85 0.14 -1.48 16 4 C -0.07 -1.51 0.44 -52.80 -0.02 -1.53 16 5 C 0.52 15.09 5.01 87.66 0.44 15.53 16 6 O -0.58 -20.01 13.77 -3.04 -0.04 -20.05 16 7 N -0.69 -20.78 3.34 -442.16 -1.48 -22.26 16 8 C 0.14 4.72 2.37 45.07 0.11 4.83 16 9 H 0.08 2.56 7.51 -2.39 -0.02 2.54 16 10 C -0.11 -3.77 5.58 30.62 0.17 -3.60 16 11 C -0.12 -4.43 5.93 30.67 0.18 -4.24 16 12 C 0.18 8.11 5.26 86.36 0.45 8.57 16 13 N -0.59 -26.17 2.64 -675.21 -1.78 -27.95 16 14 C -0.25 -11.83 8.54 84.03 0.72 -11.11 16 15 H 0.08 3.55 6.29 -2.91 -0.02 3.53 16 16 C -0.05 -2.32 4.98 84.86 0.42 -1.90 16 17 N -0.94 -52.42 11.23 21.65 0.24 -52.17 16 18 Si 0.96 41.80 29.57 68.60 2.03 43.83 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 22 C 0.16 5.89 3.19 44.98 0.14 6.03 16 23 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 24 C -0.13 -4.22 7.75 71.98 0.56 -3.66 16 25 C -0.14 -2.91 4.65 30.69 0.14 -2.77 16 26 C 0.06 1.27 6.62 72.01 0.48 1.75 16 27 O -0.39 -9.87 10.77 -148.98 -1.60 -11.47 16 28 C 0.05 1.25 6.56 72.01 0.47 1.72 16 29 C -0.12 -2.59 4.31 30.68 0.13 -2.46 16 30 H 0.11 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.09 1.50 7.84 -2.91 -0.02 1.48 16 32 H 0.12 1.85 6.88 -2.91 -0.02 1.83 16 33 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 1.46 7.79 -2.39 -0.02 1.44 16 35 H 0.41 12.49 6.65 -92.71 -0.62 11.88 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 1.96 7.53 -2.39 -0.02 1.94 16 40 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 41 H 0.05 2.76 6.21 -2.39 -0.01 2.74 16 42 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 43 H 0.06 1.89 6.38 -2.39 -0.02 1.88 16 44 H 0.05 1.73 7.69 -2.38 -0.02 1.72 16 45 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 46 H 0.10 1.75 6.57 -2.39 -0.02 1.73 16 47 H 0.08 1.70 7.05 -2.39 -0.02 1.68 16 48 H 0.03 0.89 7.38 -2.39 -0.02 0.87 16 49 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.05 1.34 6.07 -2.39 -0.01 1.33 16 51 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 52 H 0.07 1.68 7.93 -2.39 -0.02 1.66 16 53 H 0.09 1.75 7.00 -2.39 -0.02 1.73 16 Total: -1.00 -59.00 392.75 3.34 -55.67 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: 0.27 Total: 33.20 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.70 Total: 1.21 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -3.01 Total: -102.38 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -1.65 Total: -31.52 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -59.00 3.34 -55.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486186402.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.304 kcal (2) G-P(sol) polarization free energy of solvation -59.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds