Wall clock time and date at job start Tue Mar 31 2020 21:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50696 * 120.00223 * 2 1 4 4 C 1.52996 * 109.47417 * 122.20104 * 3 2 1 5 5 C 1.50705 * 109.54518 * 57.79702 * 4 3 2 6 6 O 1.21280 * 120.00203 * 247.97470 * 5 4 3 7 7 N 1.34776 * 119.99860 * 67.97128 * 5 4 3 8 8 C 1.46500 * 120.00096 * 175.98944 * 7 5 4 9 9 H 1.09002 * 109.49598 * 35.00298 * 8 7 5 10 10 C 1.53033 * 109.49598 * 274.93826 * 8 7 5 11 11 C 1.53046 * 109.53952 * 178.68448 * 10 8 7 12 12 C 1.53189 * 109.31135 * 61.36252 * 11 10 8 13 13 N 1.46929 * 108.77478 * 305.36646 * 12 11 10 14 14 C 1.36936 * 120.62959 * 233.60496 * 13 12 11 15 15 H 1.08009 * 119.99324 * 147.08872 * 14 13 12 16 16 C 1.38803 * 120.00546 * 327.09156 * 14 13 12 17 17 N 1.31618 * 120.00257 * 348.18699 * 16 14 13 18 18 Si 1.86804 * 120.00397 * 168.18667 * 16 14 13 19 19 H 1.48500 * 109.46829 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47395 * 119.99939 * 18 16 14 21 21 H 1.48501 * 109.46989 * 240.00476 * 18 16 14 22 22 C 1.46936 * 118.76476 * 53.59208 * 13 12 11 23 23 H 1.08998 * 109.55976 * 66.20906 * 22 13 12 24 24 C 1.52995 * 109.61479 * 186.63959 * 22 13 12 25 25 C 1.53182 * 109.54435 * 297.62415 * 4 3 2 26 26 C 1.53094 * 109.15994 * 183.23753 * 25 4 3 27 27 O 1.42905 * 109.48873 * 57.47389 * 26 25 4 28 28 C 1.42902 * 114.09759 * 298.89163 * 27 26 25 29 29 C 1.53097 * 109.41583 * 61.15226 * 28 27 26 30 30 H 1.08002 * 119.99635 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00275 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.00118 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.47331 * 2.19689 * 3 2 1 34 34 H 1.09004 * 109.47364 * 242.19976 * 3 2 1 35 35 H 0.97005 * 119.99574 * 355.99230 * 7 5 4 36 36 H 1.09005 * 109.45897 * 298.70218 * 10 8 7 37 37 H 1.08997 * 109.46407 * 58.66196 * 10 8 7 38 38 H 1.09000 * 109.49942 * 181.31425 * 11 10 8 39 39 H 1.09002 * 109.49391 * 301.41316 * 11 10 8 40 40 H 1.08996 * 109.59031 * 65.15469 * 12 11 10 41 41 H 1.09003 * 109.58662 * 185.57996 * 12 11 10 42 42 H 0.96996 * 120.00912 * 179.97438 * 17 16 14 43 43 H 1.09004 * 109.46856 * 179.30304 * 24 22 13 44 44 H 1.09001 * 109.47246 * 299.29861 * 24 22 13 45 45 H 1.08995 * 109.47184 * 59.30087 * 24 22 13 46 46 H 1.09004 * 109.52149 * 303.05961 * 25 4 3 47 47 H 1.09005 * 109.52069 * 63.24231 * 25 4 3 48 48 H 1.08994 * 109.41156 * 297.49224 * 26 25 4 49 49 H 1.08998 * 109.49335 * 177.50219 * 26 25 4 50 50 H 1.09000 * 109.47878 * 301.17084 * 28 27 26 51 51 H 1.09004 * 109.48249 * 181.14102 * 28 27 26 52 52 H 1.09002 * 109.51744 * 182.48749 * 29 28 27 53 53 H 1.08996 * 109.51773 * 62.30631 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9842 1.3624 1.2206 5 6 3.9279 0.1876 1.1959 6 8 3.8297 -0.6867 2.0306 7 7 4.8809 0.1087 0.2462 8 6 5.8535 -0.9866 0.2737 9 1 5.3711 -1.8923 0.6412 10 6 7.0149 -0.6152 1.1984 11 6 8.0154 -1.7720 1.2535 12 6 8.5761 -2.0242 -0.1496 13 7 7.4554 -2.2392 -1.0751 14 6 7.4052 -3.3589 -1.8618 15 1 6.4517 -3.7989 -2.1145 16 6 8.5794 -3.9284 -2.3344 17 7 9.7170 -3.2750 -2.2281 18 14 8.5454 -5.6223 -3.1213 19 1 7.1540 -6.1410 -3.1193 20 1 9.0373 -5.5287 -4.5193 21 1 9.4178 -6.5439 -2.3501 22 6 6.3890 -1.2304 -1.1407 23 1 6.7903 -0.3009 -1.5447 24 6 5.2576 -1.7366 -2.0374 25 6 2.1428 1.3168 2.4998 26 6 3.0656 1.4561 3.7134 27 8 3.8061 2.6741 3.6119 28 6 4.6475 2.7510 2.4594 29 6 3.7881 2.6660 1.1953 30 1 -0.5399 0.9354 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3559 2.1332 0.0394 34 1 2.6603 1.3801 -0.9091 35 1 4.9228 0.7771 -0.4556 36 1 7.5119 0.2768 0.8169 37 1 6.6328 -0.4175 2.1999 38 1 8.8305 -1.5162 1.9305 39 1 7.5130 -2.6707 1.6115 40 1 9.1558 -1.1594 -0.4724 41 1 9.2129 -2.9087 -0.1351 42 1 10.5377 -3.6730 -2.5580 43 1 4.4625 -0.9919 -2.0745 44 1 5.6406 -1.9094 -3.0432 45 1 4.8634 -2.6691 -1.6336 46 1 1.4252 2.1374 2.4932 47 1 1.6107 0.3669 2.5521 48 1 3.7553 0.6127 3.7427 49 1 2.4681 1.4689 4.6250 50 1 5.3580 1.9245 2.4722 51 1 5.1896 3.6967 2.4676 52 1 4.4317 2.6801 0.3157 53 1 3.1050 3.5147 1.1616 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486186404.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:28 Heat of formation + Delta-G solvation = -74.701421 kcal Electronic energy + Delta-G solvation = -31994.675803 eV Core-core repulsion = 28058.930299 eV Total energy + Delta-G solvation = -3935.745504 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.08118 -39.99954 -38.74871 -36.86457 -35.92210 -34.32307 -33.79014 -33.32971 -31.98129 -30.86451 -28.72973 -27.85031 -26.88189 -24.99319 -24.60976 -23.90613 -22.64503 -22.33266 -21.22765 -20.66488 -20.14063 -18.27273 -17.79615 -17.39418 -17.07423 -16.97782 -16.64722 -16.25951 -15.84138 -15.70444 -15.60590 -15.55411 -15.19006 -14.95562 -14.64396 -14.44591 -14.28196 -13.93519 -13.55725 -13.40693 -13.32676 -13.22706 -13.12571 -12.84986 -12.71750 -12.67902 -12.53152 -12.39508 -12.25525 -12.11624 -12.01802 -11.82355 -11.78573 -11.62695 -11.46029 -11.39207 -11.18916 -10.70318 -10.54951 -10.40374 -10.13897 -9.95680 -8.60432 -7.86658 -5.37159 1.38926 1.44159 1.47214 1.56113 1.71192 2.16381 2.52364 2.95230 3.29851 3.48119 3.54106 3.66710 3.77860 3.87400 4.00386 4.02943 4.09652 4.16239 4.19948 4.28958 4.34252 4.36446 4.49837 4.53113 4.61554 4.65482 4.69259 4.73255 4.76544 4.80878 4.87545 4.90586 4.91465 5.00887 5.01625 5.07192 5.08909 5.11433 5.12284 5.19077 5.25700 5.30009 5.44899 5.49893 5.60553 5.69944 5.75070 5.75698 5.88375 6.23499 6.43040 6.63552 7.16484 7.33415 7.85273 8.38385 9.20015 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016600 B = 0.003454 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.357624 B = 8105.743878 C = 9109.967305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.169 4.169 3 C -0.074 4.074 4 C -0.068 4.068 5 C 0.525 3.475 6 O -0.579 6.579 7 N -0.707 5.707 8 C 0.149 3.851 9 H 0.053 0.947 10 C -0.106 4.106 11 C -0.130 4.130 12 C 0.180 3.820 13 N -0.600 5.600 14 C -0.254 4.254 15 H 0.067 0.933 16 C -0.043 4.043 17 N -0.932 5.932 18 Si 0.959 3.041 19 H -0.269 1.269 20 H -0.290 1.290 21 H -0.293 1.293 22 C 0.166 3.834 23 H 0.034 0.966 24 C -0.125 4.125 25 C -0.121 4.121 26 C 0.051 3.949 27 O -0.395 6.395 28 C 0.051 3.949 29 C -0.139 4.139 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.409 0.591 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.006 0.994 41 H 0.050 0.950 42 H 0.249 0.751 43 H 0.074 0.926 44 H 0.048 0.952 45 H 0.036 0.964 46 H 0.097 0.903 47 H 0.069 0.931 48 H 0.038 0.962 49 H 0.102 0.898 50 H 0.029 0.971 51 H 0.116 0.884 52 H 0.097 0.903 53 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.203 15.662 5.666 23.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.187 4.187 3 C -0.111 4.111 4 C -0.071 4.071 5 C 0.312 3.688 6 O -0.458 6.458 7 N -0.358 5.358 8 C 0.042 3.958 9 H 0.071 0.929 10 C -0.145 4.145 11 C -0.170 4.170 12 C 0.054 3.946 13 N -0.324 5.324 14 C -0.384 4.384 15 H 0.085 0.915 16 C -0.239 4.239 17 N -0.578 5.578 18 Si 0.788 3.212 19 H -0.194 1.194 20 H -0.217 1.217 21 H -0.220 1.220 22 C 0.059 3.941 23 H 0.052 0.948 24 C -0.182 4.182 25 C -0.159 4.159 26 C -0.026 4.026 27 O -0.314 6.314 28 C -0.026 4.026 29 C -0.177 4.177 30 H 0.136 0.864 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.246 0.754 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.024 0.976 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.093 0.907 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.116 0.884 47 H 0.088 0.912 48 H 0.057 0.943 49 H 0.120 0.880 50 H 0.047 0.953 51 H 0.134 0.866 52 H 0.115 0.885 53 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.126 15.128 6.316 22.996 hybrid contribution 0.789 -1.603 -0.826 1.969 sum -15.337 13.526 5.490 21.173 Atomic orbital electron populations 1.23973 0.95328 1.02733 0.99710 1.22859 0.96743 0.98029 1.01111 1.20841 0.98141 0.96252 0.95860 1.20916 0.94895 0.93007 0.98299 1.20949 0.80488 0.87304 0.80037 1.90658 1.72736 1.42149 1.40266 1.45937 1.30660 1.29247 1.29956 1.21223 0.88285 0.89170 0.97077 0.92908 1.21653 0.95837 0.98384 0.98577 1.22030 0.98597 0.97676 0.98706 1.20576 0.89192 0.98372 0.86461 1.44226 1.22732 1.21241 1.44188 1.19397 0.92582 1.02580 1.23885 0.91530 1.25823 0.96269 1.02028 0.99765 1.70134 0.98722 1.37883 1.51022 0.85330 0.77688 0.80585 0.77608 1.19361 1.21682 1.21982 1.20713 0.89325 0.92061 0.91953 0.94842 1.21693 0.97001 1.00314 0.99214 1.21982 0.97917 1.03454 0.92553 1.22726 0.94350 0.86338 0.99140 1.87878 1.59650 1.38860 1.45061 1.22749 0.92075 1.02602 0.85171 1.22329 0.99925 0.96226 0.99180 0.86360 0.88805 0.90429 0.87571 0.89145 0.75411 0.91389 0.93179 0.91075 0.94035 0.97621 0.93167 0.94185 0.90724 0.93322 0.94499 0.88444 0.91238 0.94329 0.87983 0.95284 0.86584 0.88480 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 14.32 67.78 0.97 -1.88 16 2 C -0.17 -3.23 7.86 25.65 0.20 -3.03 16 3 C -0.07 -1.05 4.73 29.85 0.14 -0.90 16 4 C -0.07 -1.23 0.43 -52.81 -0.02 -1.25 16 5 C 0.52 13.84 3.91 87.66 0.34 14.18 16 6 O -0.58 -20.49 13.83 -3.03 -0.04 -20.54 16 7 N -0.71 -18.10 4.38 -442.17 -1.94 -20.04 16 8 C 0.15 5.13 2.03 45.07 0.09 5.22 16 9 H 0.05 2.20 7.52 -2.39 -0.02 2.19 16 10 C -0.11 -3.62 5.46 30.62 0.17 -3.46 16 11 C -0.13 -5.11 6.08 30.67 0.19 -4.93 16 12 C 0.18 8.58 5.25 86.36 0.45 9.03 16 13 N -0.60 -29.17 2.97 -675.22 -2.01 -31.17 16 14 C -0.25 -13.59 8.49 84.03 0.71 -12.88 16 15 H 0.07 3.52 6.32 -2.91 -0.02 3.50 16 16 C -0.04 -2.37 5.01 84.86 0.42 -1.94 16 17 N -0.93 -54.11 11.24 21.65 0.24 -53.87 16 18 Si 0.96 44.67 29.57 68.60 2.03 46.70 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 21 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 22 C 0.17 6.41 3.03 44.97 0.14 6.55 16 23 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 24 C -0.12 -4.44 7.87 71.98 0.57 -3.87 16 25 C -0.12 -2.34 4.28 30.69 0.13 -2.21 16 26 C 0.05 1.17 6.56 72.01 0.47 1.64 16 27 O -0.40 -9.10 10.77 -148.98 -1.60 -10.70 16 28 C 0.05 0.95 6.62 72.01 0.48 1.43 16 29 C -0.14 -1.92 4.80 30.68 0.15 -1.77 16 30 H 0.12 1.32 7.84 -2.91 -0.02 1.30 16 31 H 0.09 1.50 8.06 -2.91 -0.02 1.47 16 32 H 0.08 1.99 7.62 -2.91 -0.02 1.97 16 33 H 0.11 0.99 7.79 -2.39 -0.02 0.97 16 34 H 0.09 1.09 8.09 -2.38 -0.02 1.07 16 35 H 0.41 8.04 7.59 -92.70 -0.70 7.34 16 36 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.05 2.73 6.27 -2.39 -0.01 2.72 16 42 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 43 H 0.07 2.06 7.79 -2.38 -0.02 2.04 16 44 H 0.05 1.87 7.69 -2.39 -0.02 1.85 16 45 H 0.04 1.42 7.38 -2.39 -0.02 1.40 16 46 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.07 1.56 7.19 -2.38 -0.02 1.55 16 48 H 0.04 1.13 6.12 -2.39 -0.01 1.12 16 49 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.03 0.68 7.38 -2.39 -0.02 0.66 16 51 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 52 H 0.10 1.02 7.16 -2.39 -0.02 1.00 16 53 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -68.14 398.32 2.46 -65.68 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.17 Total: 23.99 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 5.60 Total: -0.05 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -3.70 Total: -105.08 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -1.65 Total: -31.24 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -68.14 2.46 -65.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486186404.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.021 kcal (2) G-P(sol) polarization free energy of solvation -68.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds