Wall clock time and date at job start Tue Mar 31 2020 19:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.46811 * 2 1 4 4 C 1.53004 * 109.46874 * 240.00387 * 2 1 3 5 5 C 1.52998 * 109.46874 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47589 * 59.99833 * 5 4 2 7 7 C 1.52999 * 109.46884 * 300.00167 * 6 5 4 8 8 C 1.52999 * 109.46991 * 120.00388 * 2 1 3 9 9 H 1.08995 * 109.47660 * 60.00131 * 8 2 1 10 10 O 1.42892 * 109.47173 * 299.99737 * 8 2 1 11 11 C 1.42902 * 114.00123 * 150.00354 * 10 8 2 12 12 C 1.50707 * 109.47039 * 180.02562 * 11 10 8 13 13 O 1.21281 * 120.00250 * 0.02562 * 12 11 10 14 14 N 1.34771 * 119.99706 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99893 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47207 * 180.02562 * 15 14 12 17 17 C 1.29458 * 117.69542 * 95.00203 * 16 15 14 18 18 C 1.50315 * 123.65410 * 180.86070 * 17 16 15 19 19 N 1.47002 * 109.16611 * 349.02104 * 18 17 16 20 20 C 1.36940 * 121.37791 * 222.97195 * 19 18 17 21 21 H 1.07999 * 120.00448 * 155.96731 * 20 19 18 22 22 C 1.38820 * 119.99901 * 335.96871 * 20 19 18 23 23 N 1.31621 * 119.99726 * 344.51763 * 22 20 19 24 24 Si 1.86798 * 120.00069 * 164.51350 * 22 20 19 25 25 H 1.48498 * 109.47148 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46819 * 120.00596 * 24 22 20 27 27 H 1.48499 * 109.46939 * 240.00106 * 24 22 20 28 28 C 1.47343 * 117.25177 * 42.94859 * 19 18 17 29 29 C 1.49972 * 117.69669 * 274.74039 * 16 15 14 30 30 H 1.09007 * 109.47111 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47260 * 299.99632 * 1 2 3 32 32 H 1.08993 * 109.47593 * 59.99948 * 1 2 3 33 33 H 1.09005 * 109.46928 * 299.99423 * 4 2 1 34 34 H 1.08998 * 109.47174 * 59.99946 * 4 2 1 35 35 H 1.09001 * 109.47260 * 179.97438 * 5 4 2 36 36 H 1.08995 * 109.47514 * 299.99869 * 5 4 2 37 37 H 1.08995 * 109.47658 * 180.02562 * 6 5 4 38 38 H 1.09004 * 109.46760 * 59.99381 * 6 5 4 39 39 H 1.08997 * 109.47356 * 299.99492 * 7 6 5 40 40 H 1.08997 * 109.47399 * 179.97438 * 7 6 5 41 41 H 1.08999 * 109.47087 * 300.00150 * 11 10 8 42 42 H 1.09003 * 109.47066 * 60.00381 * 11 10 8 43 43 H 0.97006 * 120.00287 * 0.02562 * 14 12 11 44 44 H 1.09005 * 109.47364 * 299.99897 * 15 14 12 45 45 H 1.08997 * 109.47234 * 60.00462 * 15 14 12 46 46 H 1.08005 * 118.16826 * 0.88105 * 17 16 15 47 47 H 1.09002 * 109.52539 * 108.92704 * 18 17 16 48 48 H 1.08996 * 109.52379 * 229.11279 * 18 17 16 49 49 H 0.96995 * 119.99848 * 179.97438 * 23 22 20 50 50 H 1.08995 * 109.77543 * 57.80848 * 28 19 18 51 51 H 1.09000 * 109.78007 * 178.56435 * 28 19 18 52 52 H 1.09000 * 109.31485 * 281.29196 * 29 16 15 53 53 H 1.09000 * 109.30705 * 40.71904 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7206 -1.2497 6 6 4.0806 -1.4416 -0.0005 7 6 3.5706 -0.7204 1.2488 8 6 2.0399 -0.7213 1.2492 9 1 1.6767 -1.7490 1.2492 10 8 1.5637 -0.0478 2.4159 11 6 1.3700 -0.9044 3.5432 12 6 0.8686 -0.0932 4.7103 13 8 0.6939 1.1008 4.5885 14 7 0.6134 -0.6948 5.8889 15 6 0.1266 0.0937 7.0235 16 6 -0.0778 -0.8096 8.2123 17 6 0.8868 -0.9018 9.0709 18 6 0.8337 -1.7758 10.2927 19 7 -0.5395 -2.2675 10.4751 20 6 -1.1284 -2.2962 11.7111 21 1 -2.2048 -2.2789 11.7970 22 6 -0.3417 -2.3474 12.8537 23 7 0.9305 -2.6726 12.7627 24 14 -1.0885 -1.9546 14.5202 25 1 -2.5259 -1.6216 14.3525 26 1 -0.9549 -3.1339 15.4128 27 1 -0.3783 -0.7967 15.1204 28 6 -1.2565 -2.7279 9.2730 29 6 -1.3865 -1.5339 8.3206 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.9333 -1.2348 -2.1395 36 1 3.9329 0.3071 -1.2498 37 1 5.1705 -1.4408 -0.0004 38 1 3.7175 -2.4694 -0.0002 39 1 3.9335 0.3074 1.2487 40 1 3.9339 -1.2341 2.1388 41 1 0.6381 -1.6728 3.2942 42 1 2.3163 -1.3761 3.8080 43 1 0.7528 -1.6499 5.9863 44 1 0.8588 0.8618 7.2730 45 1 -0.8194 0.5658 6.7587 46 1 1.7792 -0.3180 8.8998 47 1 1.5096 -2.6214 10.1654 48 1 1.1328 -1.1979 11.1672 49 1 1.4803 -2.7080 13.5610 50 1 -0.6944 -3.5285 8.7923 51 1 -2.2475 -3.0878 9.5498 52 1 -2.1473 -0.8496 8.6962 53 1 -1.6829 -1.8921 7.3347 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486517249.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:39 Heat of formation + Delta-G solvation = -86.984526 kcal Electronic energy + Delta-G solvation = -28981.892054 eV Core-core repulsion = 25045.613915 eV Total energy + Delta-G solvation = -3936.278139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.02357 -40.18723 -39.29732 -37.34041 -36.36685 -34.55765 -33.49955 -32.70261 -31.46380 -31.08684 -29.54089 -27.90416 -26.96355 -25.60717 -24.36358 -23.31038 -22.81520 -22.23026 -21.71046 -20.78541 -19.51028 -18.52987 -18.05454 -17.32569 -17.07091 -16.93745 -16.74243 -16.04734 -15.85769 -15.64415 -15.41202 -15.23270 -15.17019 -15.07073 -14.74176 -14.44105 -14.09576 -14.02171 -13.88491 -13.58964 -13.41836 -13.26495 -13.13495 -12.91583 -12.81339 -12.77551 -12.61232 -12.45380 -12.20316 -12.09319 -12.00099 -11.76754 -11.70715 -11.49870 -11.33845 -11.27144 -11.18974 -10.91704 -10.69427 -10.38191 -10.12432 -9.65670 -8.75107 -7.88992 -5.29864 1.13359 1.45903 1.48326 1.57039 1.58054 2.03999 2.50794 3.02406 3.28402 3.62059 3.67230 3.77186 3.80965 3.90151 3.96347 4.00963 4.15790 4.21969 4.27914 4.30229 4.32806 4.43912 4.50801 4.54099 4.54771 4.57135 4.64614 4.74149 4.77478 4.84158 4.91555 4.92183 4.99470 5.06342 5.10633 5.14004 5.18690 5.21878 5.29365 5.31408 5.33916 5.38425 5.41055 5.42752 5.48380 5.54668 5.61689 5.76576 6.15940 6.18035 6.33839 6.56626 7.13425 7.21338 7.83571 8.36849 9.19668 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.029891 B = 0.001745 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.506219 B =16040.950078 C =16375.987989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.059 0.941 4 C -0.107 4.107 5 C -0.123 4.123 6 C -0.114 4.114 7 C -0.143 4.143 8 C 0.091 3.909 9 H 0.079 0.921 10 O -0.385 6.385 11 C 0.047 3.953 12 C 0.509 3.491 13 O -0.577 6.577 14 N -0.708 5.708 15 C 0.169 3.831 16 C -0.138 4.138 17 C -0.141 4.141 18 C 0.204 3.796 19 N -0.616 5.616 20 C -0.255 4.255 21 H 0.070 0.930 22 C -0.055 4.055 23 N -0.939 5.939 24 Si 0.966 3.034 25 H -0.267 1.267 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.138 3.862 29 C -0.084 4.084 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.415 0.585 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.112 0.888 47 H 0.016 0.984 48 H 0.056 0.944 49 H 0.249 0.751 50 H 0.031 0.969 51 H 0.059 0.941 52 H 0.062 0.938 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.660 -0.213 -29.440 29.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.078 0.922 4 C -0.144 4.144 5 C -0.161 4.161 6 C -0.151 4.151 7 C -0.181 4.181 8 C 0.034 3.966 9 H 0.097 0.903 10 O -0.304 6.304 11 C -0.032 4.032 12 C 0.296 3.704 13 O -0.456 6.456 14 N -0.362 5.362 15 C 0.046 3.954 16 C -0.139 4.139 17 C -0.161 4.161 18 C 0.079 3.921 19 N -0.340 5.340 20 C -0.385 4.385 21 H 0.088 0.912 22 C -0.249 4.249 23 N -0.586 5.586 24 Si 0.795 3.205 25 H -0.192 1.192 26 H -0.219 1.219 27 H -0.219 1.219 28 C 0.013 3.987 29 C -0.123 4.123 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.126 0.874 42 H 0.120 0.880 43 H 0.252 0.748 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.129 0.871 47 H 0.034 0.966 48 H 0.074 0.926 49 H 0.059 0.941 50 H 0.049 0.951 51 H 0.077 0.923 52 H 0.080 0.920 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.569 0.824 -29.400 29.627 hybrid contribution 0.119 -0.232 1.638 1.658 sum 3.688 0.592 -27.762 28.012 Atomic orbital electron populations 1.21746 0.94755 1.02095 1.01475 1.21204 0.96152 0.99705 0.93611 0.92201 1.21567 0.95630 1.01035 0.96210 1.21591 0.95421 1.00797 0.98246 1.21492 1.00837 0.99536 0.93259 1.22068 0.95343 1.01278 0.99370 1.22392 0.93502 0.96387 0.84335 0.90310 1.88017 1.86900 1.35343 1.20107 1.22328 1.03027 0.92452 0.85398 1.20914 0.77114 0.88003 0.84350 1.90705 1.53409 1.17429 1.84021 1.45899 1.67093 1.13059 1.10162 1.20207 0.99263 0.92351 0.83628 1.20590 0.96704 1.00634 0.95961 1.22954 0.98492 0.98376 0.96311 1.19409 0.85676 0.93578 0.93427 1.44417 1.13002 1.73113 1.03429 1.19548 0.91563 1.43631 0.83760 0.91198 1.25726 0.96823 1.01188 1.01209 1.70164 1.07279 1.52701 1.28455 0.85211 0.78223 0.76963 0.80105 1.19165 1.21897 1.21941 1.21190 0.96086 0.94194 0.87202 1.20731 0.94145 0.97354 1.00034 0.91906 0.94077 0.91977 0.90780 0.90767 0.90494 0.92537 0.91159 0.90837 0.92668 0.91481 0.87424 0.87999 0.74786 0.92288 0.91453 0.87056 0.96589 0.92590 0.94140 0.95089 0.92267 0.91954 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.05 71.98 0.65 -1.51 16 2 C -0.09 -1.29 2.46 -10.79 -0.03 -1.32 16 3 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.11 -1.04 5.20 30.60 0.16 -0.88 16 5 C -0.12 -1.14 5.92 30.60 0.18 -0.96 16 6 C -0.11 -1.10 5.92 30.60 0.18 -0.92 16 7 C -0.14 -1.97 5.54 30.61 0.17 -1.80 16 8 C 0.09 1.38 2.05 30.61 0.06 1.45 16 9 H 0.08 0.91 7.79 -2.39 -0.02 0.89 16 10 O -0.38 -8.54 8.85 -129.95 -1.15 -9.69 16 11 C 0.05 0.82 6.23 71.24 0.44 1.27 16 12 C 0.51 13.00 7.91 87.66 0.69 13.69 16 13 O -0.58 -20.73 16.50 16.00 0.26 -20.47 16 14 N -0.71 -16.01 5.55 -466.79 -2.59 -18.60 16 15 C 0.17 4.65 5.66 85.63 0.48 5.14 16 16 C -0.14 -4.34 5.22 -15.14 -0.08 -4.41 16 17 C -0.14 -5.14 9.47 27.10 0.26 -4.88 16 18 C 0.20 9.67 5.23 85.42 0.45 10.12 16 19 N -0.62 -30.21 3.01 -703.04 -2.11 -32.32 16 20 C -0.25 -13.86 9.71 84.03 0.82 -13.05 16 21 H 0.07 3.70 7.88 -2.91 -0.02 3.67 16 22 C -0.05 -3.03 5.01 84.86 0.43 -2.61 16 23 N -0.94 -54.92 11.08 21.65 0.24 -54.68 16 24 Si 0.97 44.82 29.58 68.60 2.03 46.85 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 27 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 28 C 0.14 5.33 6.59 86.31 0.57 5.90 16 29 C -0.08 -2.61 5.95 29.72 0.18 -2.43 16 30 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.04 0.83 7.68 -2.39 -0.02 0.81 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 40 H 0.07 0.87 7.87 -2.39 -0.02 0.85 16 41 H 0.11 1.24 8.08 -2.39 -0.02 1.22 16 42 H 0.10 1.29 7.87 -2.39 -0.02 1.27 16 43 H 0.42 7.25 8.46 -92.70 -0.78 6.46 16 44 H 0.06 1.75 7.78 -2.38 -0.02 1.74 16 45 H 0.07 1.91 8.11 -2.39 -0.02 1.89 16 46 H 0.11 3.65 7.73 -2.91 -0.02 3.63 16 47 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.06 3.04 6.41 -2.39 -0.02 3.02 16 49 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 50 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.06 2.23 7.96 -2.39 -0.02 2.21 16 52 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 53 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -71.11 414.92 2.37 -68.74 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.08 Total: 17.39 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 5.61 Total: 2.79 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -4.46 Total: -105.60 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.89 Total: -30.16 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -71.11 2.37 -68.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486517249.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.248 kcal (2) G-P(sol) polarization free energy of solvation -71.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds