Wall clock time and date at job start Tue Mar 31 2020 19:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47128 * 2 1 4 4 C 1.53003 * 109.46899 * 120.00145 * 2 1 3 5 5 C 1.52998 * 109.46850 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.47055 * 299.99701 * 5 4 2 7 7 C 1.52999 * 109.46820 * 59.99935 * 6 5 4 8 8 C 1.52997 * 109.47710 * 299.99995 * 7 6 5 9 9 H 1.08989 * 109.47361 * 180.02562 * 8 7 6 10 10 O 1.42898 * 109.46864 * 300.00254 * 8 7 6 11 11 C 1.42894 * 113.99944 * 269.99550 * 10 8 7 12 12 C 1.50706 * 109.47326 * 180.02562 * 11 10 8 13 13 O 1.21284 * 119.99405 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00086 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99886 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47383 * 180.02562 * 15 14 12 17 17 C 1.29448 * 117.69803 * 94.73348 * 16 15 14 18 18 C 1.50318 * 123.65656 * 180.59070 * 17 16 15 19 19 N 1.47004 * 109.20065 * 349.50055 * 18 17 16 20 20 C 1.36944 * 121.37789 * 222.72025 * 19 18 17 21 21 H 1.07993 * 120.00113 * 155.99547 * 20 19 18 22 22 C 1.38811 * 119.99677 * 336.00042 * 20 19 18 23 23 N 1.31624 * 120.00214 * 344.50639 * 22 20 19 24 24 Si 1.86792 * 120.00142 * 164.50888 * 22 20 19 25 25 H 1.48506 * 109.47180 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47628 * 119.99678 * 24 22 20 27 27 H 1.48503 * 109.47176 * 240.00039 * 24 22 20 28 28 C 1.47341 * 117.25185 * 42.73833 * 19 18 17 29 29 C 1.49974 * 117.68869 * 274.99728 * 16 15 14 30 30 H 1.08998 * 109.47128 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46829 * 300.00075 * 1 2 3 32 32 H 1.08998 * 109.46801 * 59.99832 * 1 2 3 33 33 H 1.09004 * 109.47200 * 299.99552 * 4 2 1 34 34 H 1.08998 * 109.47349 * 59.99990 * 4 2 1 35 35 H 1.08998 * 109.47221 * 59.99829 * 5 4 2 36 36 H 1.09002 * 109.47209 * 180.02562 * 5 4 2 37 37 H 1.09002 * 109.47244 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.47210 * 300.00134 * 6 5 4 39 39 H 1.09011 * 109.47051 * 179.97438 * 7 6 5 40 40 H 1.09006 * 109.47119 * 60.00745 * 7 6 5 41 41 H 1.08996 * 109.47151 * 60.00270 * 11 10 8 42 42 H 1.08999 * 109.47283 * 299.99765 * 11 10 8 43 43 H 0.96999 * 120.00600 * 359.97438 * 14 12 11 44 44 H 1.09001 * 109.47541 * 59.99685 * 15 14 12 45 45 H 1.09004 * 109.47231 * 299.99789 * 15 14 12 46 46 H 1.07999 * 118.17601 * 0.86298 * 17 16 15 47 47 H 1.09000 * 109.67104 * 229.48097 * 18 17 16 48 48 H 1.09000 * 109.38582 * 109.34867 * 18 17 16 49 49 H 0.96994 * 120.00389 * 180.02562 * 23 22 20 50 50 H 1.09003 * 109.77975 * 178.61418 * 28 19 18 51 51 H 1.09002 * 109.81892 * 57.83793 * 28 19 18 52 52 H 1.08994 * 109.31532 * 281.28384 * 29 16 15 53 53 H 1.09002 * 109.31418 * 40.90893 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7207 1.2496 6 6 4.0805 -1.4417 0.0003 7 6 3.5705 -0.7204 -1.2489 8 6 2.0405 -0.7209 -1.2493 9 1 1.6772 -0.2075 -2.1394 10 8 1.5647 -2.0683 -1.2495 11 6 1.3714 -2.6162 -2.5551 12 6 0.8705 -4.0326 -2.4364 13 8 0.6958 -4.5242 -1.3415 14 7 0.6157 -4.7525 -3.5469 15 6 0.1283 -6.1292 -3.4315 16 6 -0.0755 -6.7071 -4.8083 17 6 0.8910 -7.4004 -5.3190 18 6 0.8365 -8.0260 -6.6847 19 7 -0.5365 -7.9375 -7.2025 20 6 -1.1250 -8.9931 -7.8464 21 1 -2.2014 -9.0758 -7.8755 22 6 -0.3381 -9.9570 -8.4617 23 7 0.9344 -9.7159 -8.6967 24 14 -1.0848 -11.5962 -8.9563 25 1 -2.5223 -11.6176 -8.5842 26 1 -0.9501 -11.7789 -10.4238 27 1 -0.3756 -12.6954 -8.2534 28 6 -1.2531 -6.6661 -7.0005 29 6 -1.3815 -6.4332 -5.4928 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6767 -0.2074 2.1393 34 1 1.6767 -1.7489 1.2493 35 1 3.9330 0.3070 1.2498 36 1 3.9334 -1.2350 2.1393 37 1 5.1706 -1.4409 0.0003 38 1 3.7176 -2.4694 0.0001 39 1 3.9345 -1.2338 -2.1390 40 1 3.9335 0.3074 -1.2487 41 1 2.3177 -2.6092 -3.0958 42 1 0.6393 -2.0165 -3.0960 43 1 0.7544 -4.3590 -4.4225 44 1 -0.8181 -6.1355 -2.8907 45 1 0.8598 -6.7296 -2.8906 46 1 1.7848 -7.5409 -4.7292 47 1 1.1352 -9.0723 -6.6212 48 1 1.5131 -7.4940 -7.3536 49 1 1.4842 -10.3892 -9.1269 50 1 -2.2442 -6.7258 -7.4503 51 1 -0.6913 -5.8492 -7.4534 52 1 -2.1462 -7.0969 -5.0893 53 1 -1.6720 -5.3979 -5.3142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486517250.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:43 Heat of formation + Delta-G solvation = -84.827083 kcal Electronic energy + Delta-G solvation = -29310.564875 eV Core-core repulsion = 25374.380290 eV Total energy + Delta-G solvation = -3936.184585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.03500 -40.22668 -39.29059 -36.97973 -36.33452 -34.55203 -33.47467 -32.69731 -31.46891 -31.13622 -29.61098 -27.90700 -26.95936 -25.59763 -24.36007 -23.40971 -22.84660 -22.27594 -21.61959 -20.52235 -19.51675 -18.60328 -17.62893 -17.36857 -17.13114 -16.99386 -16.48318 -16.27253 -15.98820 -15.70490 -15.36404 -15.31902 -15.16942 -14.77332 -14.72213 -14.40046 -14.12436 -13.92113 -13.89990 -13.56801 -13.46125 -13.26589 -13.03289 -12.90501 -12.81244 -12.61534 -12.51814 -12.43555 -12.39877 -12.20316 -12.09544 -11.74014 -11.71158 -11.42319 -11.35637 -11.27560 -10.90754 -10.82787 -10.69698 -10.35693 -10.10930 -9.65763 -8.75415 -7.89226 -5.30175 1.13919 1.45668 1.48129 1.57849 1.59713 2.08074 2.50519 3.10874 3.28067 3.61944 3.70941 3.82451 3.83500 3.91030 3.93821 3.96162 4.22614 4.24662 4.28207 4.31556 4.43944 4.44657 4.53546 4.57138 4.62243 4.64828 4.65548 4.74217 4.79398 4.84092 4.92031 4.93227 4.98395 5.08017 5.10491 5.11097 5.21354 5.23390 5.31431 5.34763 5.36798 5.41210 5.43116 5.47564 5.48122 5.61437 5.63374 5.76487 6.15813 6.23005 6.33594 6.58854 7.13119 7.23548 7.83246 8.36508 9.19430 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.029649 B = 0.001838 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.159688 B =15230.737921 C =15536.226837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 H 0.100 0.900 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.117 4.117 7 C -0.140 4.140 8 C 0.087 3.913 9 H 0.081 0.919 10 O -0.375 6.375 11 C 0.046 3.954 12 C 0.509 3.491 13 O -0.576 6.576 14 N -0.710 5.710 15 C 0.169 3.831 16 C -0.137 4.137 17 C -0.142 4.142 18 C 0.205 3.795 19 N -0.616 5.616 20 C -0.255 4.255 21 H 0.070 0.930 22 C -0.056 4.056 23 N -0.939 5.939 24 Si 0.967 3.033 25 H -0.267 1.267 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.138 3.862 29 C -0.084 4.084 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.041 0.959 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.415 0.585 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.111 0.889 47 H 0.056 0.944 48 H 0.016 0.984 49 H 0.249 0.751 50 H 0.059 0.941 51 H 0.030 0.970 52 H 0.062 0.938 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.718 24.241 15.457 28.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 H 0.119 0.881 4 C -0.149 4.149 5 C -0.153 4.153 6 C -0.155 4.155 7 C -0.177 4.177 8 C 0.029 3.971 9 H 0.099 0.901 10 O -0.294 6.294 11 C -0.033 4.033 12 C 0.296 3.704 13 O -0.455 6.455 14 N -0.363 5.363 15 C 0.046 3.954 16 C -0.138 4.138 17 C -0.162 4.162 18 C 0.080 3.920 19 N -0.340 5.340 20 C -0.385 4.385 21 H 0.088 0.912 22 C -0.250 4.250 23 N -0.586 5.586 24 Si 0.795 3.205 25 H -0.192 1.192 26 H -0.219 1.219 27 H -0.219 1.219 28 C 0.013 3.987 29 C -0.123 4.123 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.118 0.882 42 H 0.124 0.876 43 H 0.252 0.748 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.129 0.871 47 H 0.074 0.926 48 H 0.033 0.967 49 H 0.059 0.941 50 H 0.078 0.922 51 H 0.048 0.952 52 H 0.080 0.920 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.628 23.685 16.338 29.002 hybrid contribution 0.067 -1.310 -1.085 1.702 sum 3.696 22.375 15.253 27.331 Atomic orbital electron populations 1.21759 0.95016 1.01292 1.02123 1.21270 0.95941 0.99337 0.93687 0.88142 1.21494 0.95790 1.00097 0.97548 1.21510 0.95274 1.01025 0.97486 1.21414 0.99942 0.99087 0.95034 1.22050 0.95277 1.02127 0.98259 1.22392 0.93631 0.81902 0.99150 0.90075 1.88046 1.86812 1.29058 1.25440 1.22310 1.02855 0.90707 0.87450 1.20939 0.77082 0.88546 0.83815 1.90706 1.53341 1.73010 1.28402 1.45906 1.67183 1.13948 1.09288 1.20192 0.99205 0.81926 0.94074 1.20583 0.96656 1.01146 0.95422 1.22945 0.98458 0.97139 0.97660 1.19401 0.85655 0.98397 0.88576 1.44421 1.13057 1.10993 1.65504 1.19543 0.91558 1.00885 1.26474 0.91182 1.25734 0.96836 1.03087 0.99372 1.70164 1.07254 1.34375 1.46810 0.85207 0.78220 0.80045 0.76996 1.19160 1.21887 1.21937 1.21156 0.96097 0.87240 0.94192 1.20702 0.94220 1.01527 0.95823 0.94218 0.92128 0.91877 0.91604 0.93975 0.90623 0.92550 0.91690 0.94010 0.91625 0.89142 0.88209 0.87560 0.74848 0.91507 0.92362 0.87079 0.92583 0.96676 0.94135 0.92246 0.95171 0.91965 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.05 71.98 0.65 -1.41 16 2 C -0.08 -1.11 2.55 -10.79 -0.03 -1.14 16 3 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.11 -1.80 5.06 30.59 0.15 -1.65 16 5 C -0.12 -1.63 5.92 30.59 0.18 -1.45 16 6 C -0.12 -1.85 5.78 30.60 0.18 -1.67 16 7 C -0.14 -1.71 5.63 30.59 0.17 -1.54 16 8 C 0.09 1.19 2.35 30.59 0.07 1.26 16 9 H 0.08 0.78 7.78 -2.39 -0.02 0.76 16 10 O -0.37 -7.80 7.50 -129.94 -0.97 -8.77 16 11 C 0.05 0.78 6.23 71.24 0.44 1.22 16 12 C 0.51 12.82 7.91 87.66 0.69 13.52 16 13 O -0.58 -20.45 16.50 16.00 0.26 -20.19 16 14 N -0.71 -15.97 5.55 -466.78 -2.59 -18.56 16 15 C 0.17 4.67 5.66 85.63 0.48 5.16 16 16 C -0.14 -4.32 5.23 -15.13 -0.08 -4.40 16 17 C -0.14 -5.17 9.47 27.11 0.26 -4.92 16 18 C 0.20 9.72 5.23 85.42 0.45 10.16 16 19 N -0.62 -30.27 3.01 -703.39 -2.12 -32.39 16 20 C -0.25 -13.85 9.71 84.03 0.82 -13.04 16 21 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 22 C -0.06 -3.09 5.01 84.86 0.43 -2.66 16 23 N -0.94 -54.98 11.08 21.65 0.24 -54.74 16 24 Si 0.97 44.87 29.58 68.60 2.03 46.90 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 26 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 27 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 28 C 0.14 5.33 6.58 86.25 0.57 5.90 16 29 C -0.08 -2.61 5.95 29.66 0.18 -2.44 16 30 H 0.04 0.78 7.68 -2.39 -0.02 0.76 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 34 H 0.04 0.96 7.68 -2.39 -0.02 0.94 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.04 0.91 7.68 -2.39 -0.02 0.89 16 39 H 0.07 0.78 7.87 -2.38 -0.02 0.76 16 40 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.10 1.22 7.87 -2.39 -0.02 1.21 16 42 H 0.11 1.17 8.08 -2.39 -0.02 1.15 16 43 H 0.41 7.25 8.46 -92.71 -0.78 6.46 16 44 H 0.07 1.90 8.11 -2.39 -0.02 1.88 16 45 H 0.06 1.74 7.79 -2.38 -0.02 1.72 16 46 H 0.11 3.66 7.74 -2.91 -0.02 3.64 16 47 H 0.06 3.05 6.41 -2.39 -0.02 3.03 16 48 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 50 H 0.06 2.24 7.96 -2.39 -0.02 2.22 16 51 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 53 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -71.15 412.84 2.55 -68.61 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.08 Total: 18.23 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 5.61 Total: 0.92 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -4.47 Total: -105.70 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.71 Total: -28.96 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -71.15 2.55 -68.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486517250.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.219 kcal (2) G-P(sol) polarization free energy of solvation -71.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds