Wall clock time and date at job start Tue Mar 31 2020 19:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47118 * 2 1 4 4 C 1.52994 * 109.47080 * 120.00061 * 2 1 3 5 5 C 1.53003 * 109.47461 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47153 * 300.00434 * 5 4 2 7 7 C 1.53002 * 109.47094 * 59.99289 * 6 5 4 8 8 C 1.52999 * 109.46831 * 239.99875 * 2 1 3 9 9 H 1.08999 * 109.47372 * 299.99970 * 8 2 1 10 10 O 1.42900 * 109.47136 * 60.00485 * 8 2 1 11 11 C 1.42905 * 113.99794 * 209.99682 * 10 8 2 12 12 C 1.50701 * 109.47211 * 179.97438 * 11 10 8 13 13 O 1.21280 * 119.99652 * 0.02562 * 12 11 10 14 14 N 1.34770 * 120.00161 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00007 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.47146 * 180.02562 * 15 14 12 17 17 C 1.29455 * 117.69134 * 95.00547 * 16 15 14 18 18 C 1.50325 * 123.64739 * 180.86273 * 17 16 15 19 19 N 1.47008 * 109.16692 * 349.01288 * 18 17 16 20 20 C 1.36930 * 121.37481 * 222.92590 * 19 18 17 21 21 H 1.08004 * 119.99872 * 155.98135 * 20 19 18 22 22 C 1.38810 * 120.00450 * 335.98919 * 20 19 18 23 23 N 1.31617 * 119.99756 * 344.51896 * 22 20 19 24 24 Si 1.86800 * 120.00175 * 164.52250 * 22 20 19 25 25 H 1.48499 * 109.47538 * 89.99944 * 24 22 20 26 26 H 1.48500 * 109.46921 * 209.99813 * 24 22 20 27 27 H 1.48501 * 109.47345 * 329.99598 * 24 22 20 28 28 C 1.47339 * 117.24641 * 42.95132 * 19 18 17 29 29 C 1.49969 * 117.69598 * 274.74074 * 16 15 14 30 30 H 1.08997 * 109.47616 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47079 * 300.00307 * 1 2 3 32 32 H 1.08996 * 109.47046 * 59.99463 * 1 2 3 33 33 H 1.09000 * 109.47536 * 300.00024 * 4 2 1 34 34 H 1.08997 * 109.47556 * 59.99593 * 4 2 1 35 35 H 1.09008 * 109.46726 * 59.99932 * 5 4 2 36 36 H 1.08998 * 109.47552 * 179.97438 * 5 4 2 37 37 H 1.08999 * 109.47002 * 299.99343 * 6 5 4 38 38 H 1.09000 * 109.47179 * 179.97438 * 6 5 4 39 39 H 1.09004 * 109.46666 * 180.02562 * 7 6 5 40 40 H 1.08996 * 109.47132 * 60.00914 * 7 6 5 41 41 H 1.08989 * 109.47208 * 299.99834 * 11 10 8 42 42 H 1.09007 * 109.47087 * 59.99977 * 11 10 8 43 43 H 0.97001 * 120.00402 * 0.02562 * 14 12 11 44 44 H 1.09003 * 109.47142 * 300.00520 * 15 14 12 45 45 H 1.08995 * 109.47300 * 60.00300 * 15 14 12 46 46 H 1.08000 * 118.17978 * 0.82974 * 17 16 15 47 47 H 1.08999 * 109.52726 * 108.92383 * 18 17 16 48 48 H 1.09006 * 109.51906 * 229.11037 * 18 17 16 49 49 H 0.97006 * 119.99872 * 180.02562 * 23 22 20 50 50 H 1.09003 * 109.77765 * 57.81411 * 28 19 18 51 51 H 1.09003 * 109.77591 * 178.55673 * 28 19 18 52 52 H 1.08998 * 109.30991 * 281.29067 * 29 16 15 53 53 H 1.08997 * 109.30869 * 40.71593 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2490 6 6 4.0795 -1.4434 -0.0003 7 6 3.5695 -0.7221 -1.2495 8 6 2.0399 -0.7213 -1.2492 9 1 1.6766 -1.7489 -1.2492 10 8 1.5636 -0.0476 -2.4160 11 6 1.3699 -0.9042 -3.5433 12 6 0.8686 -0.0931 -4.7103 13 8 0.6949 1.1010 -4.5887 14 7 0.6144 -0.6944 -5.8893 15 6 0.1276 0.0942 -7.0239 16 6 -0.0769 -0.8091 -8.2127 17 6 -1.2655 -1.2817 -8.4118 18 6 -1.6149 -2.2080 -9.5430 19 7 -0.4916 -2.2585 -10.4900 20 6 -0.6976 -2.2204 -11.8432 21 1 0.0873 -1.8743 -12.4994 22 6 -1.9153 -2.6264 -12.3716 23 7 -2.7529 -3.3241 -11.6341 24 14 -2.3652 -2.1825 -14.1295 25 1 -1.8932 -3.2512 -15.0462 26 1 -3.8396 -2.0476 -14.2440 27 1 -1.7205 -0.8959 -14.4957 28 6 0.8651 -2.3525 -9.9229 29 6 1.1096 -1.0924 -9.0851 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6767 -0.2075 2.1392 34 1 1.6766 -1.7489 1.2493 35 1 3.9337 0.3058 1.2487 36 1 3.9333 -1.2353 2.1391 37 1 3.7159 -2.4709 -0.0001 38 1 5.1695 -1.4434 -0.0007 39 1 3.9321 -1.2365 -2.1395 40 1 3.9332 0.3054 -1.2498 41 1 2.3161 -1.3759 -3.8081 42 1 0.6379 -1.6726 -3.2943 43 1 0.7537 -1.6494 -5.9867 44 1 -0.8189 0.5657 -6.7592 45 1 0.8593 0.8628 -7.2728 46 1 -2.0498 -0.9948 -7.7269 47 1 -1.8055 -3.2068 -9.1504 48 1 -2.5052 -1.8402 -10.0533 49 1 -3.6037 -3.6081 -12.0035 50 1 0.9411 -3.2391 -9.2934 51 1 1.5982 -2.4078 -10.7276 52 1 1.2818 -0.2432 -9.7463 53 1 1.9893 -1.2428 -8.4594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486517251.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:48 Heat of formation + Delta-G solvation = -86.810521 kcal Electronic energy + Delta-G solvation = -28982.848795 eV Core-core repulsion = 25046.578201 eV Total energy + Delta-G solvation = -3936.270594 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.02477 -40.18976 -39.29657 -37.33960 -36.36607 -34.55711 -33.50152 -32.70194 -31.46310 -31.08867 -29.54097 -27.90312 -26.96841 -25.60471 -24.36314 -23.30630 -22.81347 -22.23326 -21.71005 -20.78485 -19.50787 -18.52938 -18.05701 -17.31966 -17.08271 -16.90271 -16.76261 -16.05041 -15.85543 -15.63846 -15.42596 -15.22807 -15.16585 -15.07684 -14.71112 -14.48093 -14.08349 -13.98708 -13.90519 -13.59836 -13.42273 -13.26988 -13.13024 -12.91326 -12.79551 -12.77824 -12.58092 -12.45521 -12.24468 -12.11089 -11.99658 -11.76850 -11.70832 -11.49798 -11.33982 -11.27357 -11.18800 -10.91691 -10.68114 -10.38154 -10.12423 -9.65563 -8.74653 -7.88742 -5.29460 1.13487 1.46499 1.48617 1.57043 1.57590 2.03989 2.51132 3.02354 3.28742 3.62236 3.67173 3.77283 3.81038 3.90249 3.96374 4.00964 4.15755 4.22175 4.27832 4.30244 4.33059 4.43948 4.50867 4.54020 4.54646 4.57281 4.64590 4.74197 4.76993 4.84072 4.91368 4.92189 4.99104 5.06476 5.10605 5.14009 5.18808 5.21942 5.29536 5.31493 5.33943 5.38344 5.41030 5.42180 5.48495 5.54702 5.61562 5.76627 6.16074 6.17973 6.33982 6.56638 7.13651 7.21342 7.83872 8.37216 9.19806 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.029972 B = 0.001739 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.979108 B =16094.658190 C =16320.420525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.060 0.940 4 C -0.107 4.107 5 C -0.123 4.123 6 C -0.114 4.114 7 C -0.142 4.142 8 C 0.091 3.909 9 H 0.077 0.923 10 O -0.385 6.385 11 C 0.047 3.953 12 C 0.509 3.491 13 O -0.577 6.577 14 N -0.708 5.708 15 C 0.169 3.831 16 C -0.138 4.138 17 C -0.141 4.141 18 C 0.204 3.796 19 N -0.615 5.615 20 C -0.257 4.257 21 H 0.070 0.930 22 C -0.054 4.054 23 N -0.939 5.939 24 Si 0.967 3.033 25 H -0.284 1.284 26 H -0.294 1.294 27 H -0.273 1.273 28 C 0.139 3.861 29 C -0.084 4.084 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.415 0.585 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.112 0.888 47 H 0.016 0.984 48 H 0.056 0.944 49 H 0.250 0.750 50 H 0.031 0.969 51 H 0.059 0.941 52 H 0.062 0.938 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.667 1.375 26.646 29.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.079 0.921 4 C -0.145 4.145 5 C -0.160 4.160 6 C -0.151 4.151 7 C -0.180 4.180 8 C 0.033 3.967 9 H 0.095 0.905 10 O -0.304 6.304 11 C -0.032 4.032 12 C 0.296 3.704 13 O -0.456 6.456 14 N -0.362 5.362 15 C 0.046 3.954 16 C -0.139 4.139 17 C -0.161 4.161 18 C 0.079 3.921 19 N -0.339 5.339 20 C -0.387 4.387 21 H 0.087 0.913 22 C -0.249 4.249 23 N -0.585 5.585 24 Si 0.795 3.205 25 H -0.211 1.211 26 H -0.220 1.220 27 H -0.198 1.198 28 C 0.013 3.987 29 C -0.123 4.123 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.252 0.748 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.130 0.870 47 H 0.034 0.966 48 H 0.074 0.926 49 H 0.059 0.941 50 H 0.049 0.951 51 H 0.077 0.923 52 H 0.080 0.920 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.374 2.379 26.668 29.495 hybrid contribution -0.688 -0.383 -1.391 1.598 sum 11.687 1.996 25.277 27.919 Atomic orbital electron populations 1.21750 0.94904 1.02027 1.01450 1.21201 0.96027 0.99760 0.93667 0.92110 1.21565 0.95733 1.00982 0.96194 1.21591 0.95315 1.00846 0.98296 1.21491 1.00893 0.99496 0.93237 1.22044 0.95163 1.01344 0.99413 1.22374 0.93653 0.96315 0.84312 0.90454 1.88019 1.86929 1.35311 1.20110 1.22325 1.03077 0.92398 0.85402 1.20912 0.77116 0.88000 0.84355 1.90705 1.53418 1.17437 1.84004 1.45898 1.67121 1.13034 1.10159 1.20206 0.99275 0.92615 0.83348 1.20586 0.95808 1.00436 0.97089 1.22956 0.97142 0.97565 0.98430 1.19415 0.91052 0.94066 0.87557 1.44407 1.01697 1.85933 1.01913 1.19498 0.99933 1.35631 0.83604 0.91252 1.25720 0.98973 0.98679 1.01525 1.70158 1.10618 1.39804 1.37966 0.85284 0.76702 0.78181 0.80345 1.21065 1.22013 1.19795 1.21187 0.86445 0.95179 0.95859 1.20727 0.95622 0.98798 0.97118 0.92019 0.91971 0.94142 0.90807 0.90877 0.92477 0.90510 0.90901 0.91034 0.91302 0.92577 0.87649 0.87782 0.74788 0.92251 0.91497 0.87021 0.96584 0.92571 0.94131 0.95107 0.92287 0.91981 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.05 71.98 0.65 -1.61 16 2 C -0.09 -1.31 2.46 -10.80 -0.03 -1.33 16 3 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.11 -1.07 5.20 30.59 0.16 -0.91 16 5 C -0.12 -1.12 5.92 30.59 0.18 -0.94 16 6 C -0.11 -1.06 5.92 30.59 0.18 -0.88 16 7 C -0.14 -1.89 5.54 30.58 0.17 -1.72 16 8 C 0.09 1.38 2.04 30.58 0.06 1.44 16 9 H 0.08 0.91 7.79 -2.39 -0.02 0.89 16 10 O -0.38 -8.55 8.85 -129.94 -1.15 -9.70 16 11 C 0.05 0.83 6.23 71.24 0.44 1.27 16 12 C 0.51 13.01 7.91 87.66 0.69 13.70 16 13 O -0.58 -20.75 16.50 16.01 0.26 -20.48 16 14 N -0.71 -16.03 5.55 -466.80 -2.59 -18.62 16 15 C 0.17 4.66 5.66 85.63 0.48 5.14 16 16 C -0.14 -4.35 5.22 -15.14 -0.08 -4.43 16 17 C -0.14 -5.12 9.47 27.11 0.26 -4.86 16 18 C 0.20 9.66 5.23 85.42 0.45 10.11 16 19 N -0.62 -30.23 3.01 -703.03 -2.11 -32.34 16 20 C -0.26 -13.96 9.71 84.03 0.82 -13.15 16 21 H 0.07 3.67 7.88 -2.91 -0.02 3.64 16 22 C -0.05 -3.00 5.01 84.86 0.43 -2.58 16 23 N -0.94 -54.84 11.08 21.65 0.24 -54.60 16 24 Si 0.97 44.78 29.58 68.60 2.03 46.81 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 27 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 28 C 0.14 5.34 6.59 86.31 0.57 5.91 16 29 C -0.08 -2.62 5.95 29.71 0.18 -2.44 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.04 0.84 7.68 -2.39 -0.02 0.83 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 39 H 0.07 0.84 7.87 -2.38 -0.02 0.82 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.11 1.25 7.87 -2.39 -0.02 1.23 16 42 H 0.10 1.28 8.09 -2.38 -0.02 1.26 16 43 H 0.42 7.26 8.46 -92.71 -0.78 6.48 16 44 H 0.06 1.76 7.78 -2.39 -0.02 1.74 16 45 H 0.07 1.90 8.11 -2.39 -0.02 1.88 16 46 H 0.11 3.65 7.73 -2.91 -0.02 3.63 16 47 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.06 3.04 6.41 -2.38 -0.02 3.03 16 49 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 50 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.06 2.22 7.96 -2.39 -0.02 2.21 16 52 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 53 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -71.01 414.90 2.37 -68.64 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.08 Total: 17.56 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 5.61 Total: 2.74 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -4.46 Total: -105.56 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.89 Total: -30.18 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -71.01 2.37 -68.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486517251.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.175 kcal (2) G-P(sol) polarization free energy of solvation -71.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds