Wall clock time and date at job start Tue Mar 31 2020 19:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47314 * 2 1 4 4 C 1.52994 * 109.47430 * 239.99868 * 2 1 3 5 5 C 1.52995 * 109.47382 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47267 * 59.99855 * 5 4 2 7 7 C 1.53006 * 109.47218 * 300.00118 * 6 5 4 8 8 C 1.52992 * 109.46787 * 59.99975 * 7 6 5 9 9 H 1.09005 * 109.47209 * 180.02562 * 8 7 6 10 10 O 1.42895 * 109.47664 * 60.00082 * 8 7 6 11 11 C 1.42902 * 113.99939 * 89.99439 * 10 8 7 12 12 C 1.50696 * 109.47202 * 180.02562 * 11 10 8 13 13 O 1.21282 * 120.00144 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00117 * 180.02562 * 12 11 10 15 15 C 1.46503 * 120.00410 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47479 * 179.97438 * 15 14 12 17 17 C 1.29211 * 117.50186 * 95.18262 * 16 15 14 18 18 C 1.50319 * 123.57669 * 181.03275 * 17 16 15 19 19 N 1.47010 * 109.16271 * 348.84110 * 18 17 16 20 20 C 1.36935 * 121.37205 * 222.92004 * 19 18 17 21 21 H 1.08005 * 119.99815 * 156.11663 * 20 19 18 22 22 C 1.38806 * 120.00436 * 336.11460 * 20 19 18 23 23 N 1.31615 * 120.00089 * 344.32059 * 22 20 19 24 24 Si 1.86802 * 120.00238 * 164.31872 * 22 20 19 25 25 H 1.48500 * 109.47196 * 94.57517 * 24 22 20 26 26 H 1.48497 * 109.47439 * 214.57651 * 24 22 20 27 27 H 1.48505 * 109.46810 * 334.57827 * 24 22 20 28 28 C 1.47337 * 117.24918 * 42.94749 * 19 18 17 29 29 C 1.49964 * 117.69659 * 275.00310 * 16 15 14 30 30 H 1.09004 * 109.46825 * 300.00616 * 1 2 3 31 31 H 1.09000 * 109.46990 * 59.99711 * 1 2 3 32 32 H 1.08989 * 109.47285 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46980 * 300.00337 * 4 2 1 34 34 H 1.09006 * 109.47039 * 59.99399 * 4 2 1 35 35 H 1.09000 * 109.47160 * 180.02562 * 5 4 2 36 36 H 1.09004 * 109.46808 * 299.99563 * 5 4 2 37 37 H 1.09004 * 109.47445 * 60.00097 * 6 5 4 38 38 H 1.09004 * 109.47069 * 179.97438 * 6 5 4 39 39 H 1.08997 * 109.46544 * 300.00195 * 7 6 5 40 40 H 1.08997 * 109.46715 * 180.02562 * 7 6 5 41 41 H 1.09001 * 109.46985 * 60.00504 * 11 10 8 42 42 H 1.09000 * 109.47436 * 300.00786 * 11 10 8 43 43 H 0.97005 * 120.00126 * 359.97438 * 14 12 11 44 44 H 1.09001 * 109.46888 * 59.99788 * 15 14 12 45 45 H 1.09000 * 109.47124 * 300.00320 * 15 14 12 46 46 H 1.08003 * 118.24932 * 0.85289 * 17 16 15 47 47 H 1.08996 * 109.52858 * 228.93302 * 18 17 16 48 48 H 1.09001 * 109.51872 * 108.74205 * 18 17 16 49 49 H 0.97000 * 120.00191 * 179.97438 * 23 22 20 50 50 H 1.09008 * 109.77786 * 178.61762 * 28 19 18 51 51 H 1.09002 * 109.83059 * 57.83450 * 28 19 18 52 52 H 1.08998 * 109.31539 * 40.69336 * 29 16 15 53 53 H 1.09001 * 109.31478 * 281.07092 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4433 0.0004 7 6 3.5695 -0.7220 1.2497 8 6 2.0396 -0.7216 1.2493 9 1 1.6761 -0.2073 2.1391 10 8 1.5627 -2.0686 1.2490 11 6 1.3685 -2.6167 2.5544 12 6 0.8678 -4.0330 2.4352 13 8 0.6939 -4.5246 1.3402 14 7 0.6124 -4.7532 3.5454 15 6 0.1261 -6.1303 3.4295 16 6 -0.0788 -6.7082 4.8061 17 6 -1.2676 -6.6462 5.3084 18 6 -1.6197 -7.1589 6.6769 19 7 -0.4969 -7.9513 7.1989 20 6 -0.7035 -9.1406 7.8456 21 1 0.0826 -9.8803 7.8798 22 6 -1.9233 -9.3953 8.4572 23 7 -2.7619 -8.4080 8.6895 24 14 -2.3746 -11.1396 8.9504 25 1 -2.0070 -11.3629 10.3718 26 1 -3.8360 -11.3399 8.7798 27 1 -1.6393 -12.1027 8.0918 28 6 0.8597 -7.4128 6.9982 29 6 1.1090 -7.3162 5.4906 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.9334 -1.2352 -2.1390 36 1 3.9337 0.3058 -1.2487 37 1 3.7158 -2.4709 0.0003 38 1 5.1695 -1.4441 0.0004 39 1 3.9332 0.3055 1.2498 40 1 3.9329 -1.2359 2.1396 41 1 0.6368 -2.0166 3.0952 42 1 2.3147 -2.6104 3.0956 43 1 0.7511 -4.3599 4.4212 44 1 0.8587 -6.7300 2.8894 45 1 -0.8196 -6.1373 2.8877 46 1 -2.0509 -6.1991 4.7142 47 1 -2.5093 -7.7855 6.6134 48 1 -1.8124 -6.3176 7.3426 49 1 -3.6145 -8.5860 9.1166 50 1 1.5925 -8.0808 7.4511 51 1 0.9351 -6.4231 7.4486 52 1 1.9864 -6.6956 5.3093 53 1 1.2843 -8.3145 5.0896 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486517252.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:53 Heat of formation + Delta-G solvation = -84.333828 kcal Electronic energy + Delta-G solvation = -29312.230810 eV Core-core repulsion = 25376.067614 eV Total energy + Delta-G solvation = -3936.163196 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.03632 -40.22949 -39.30265 -36.97823 -36.33603 -34.55425 -33.47565 -32.70560 -31.47033 -31.13392 -29.60983 -27.90636 -26.96197 -25.59268 -24.36391 -23.40629 -22.84305 -22.27464 -21.61919 -20.52059 -19.51710 -18.60357 -17.62909 -17.35212 -17.18226 -16.93923 -16.50612 -16.27156 -15.97356 -15.67775 -15.47874 -15.24590 -15.13039 -14.84307 -14.63614 -14.46947 -14.04666 -13.98954 -13.87330 -13.58145 -13.46470 -13.27378 -13.01648 -12.90642 -12.80125 -12.58927 -12.52292 -12.43320 -12.39931 -12.23787 -12.10587 -11.74123 -11.71141 -11.41909 -11.35560 -11.27638 -10.90564 -10.82626 -10.68494 -10.35516 -10.10850 -9.66655 -8.75283 -7.89034 -5.29658 1.14747 1.46069 1.48248 1.57566 1.59720 2.08237 2.50807 3.10865 3.28343 3.62076 3.70980 3.82519 3.83718 3.91163 3.93741 3.96084 4.22416 4.24732 4.28555 4.31577 4.44216 4.44847 4.53436 4.57298 4.62457 4.64726 4.65756 4.74407 4.79227 4.83864 4.91926 4.93212 4.98161 5.08051 5.10422 5.11045 5.21605 5.23621 5.31861 5.34888 5.36992 5.41283 5.43355 5.47242 5.48205 5.61353 5.63469 5.76606 6.16281 6.23000 6.33669 6.58875 7.13293 7.23578 7.83541 8.36806 9.19548 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.030543 B = 0.001832 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.522662 B =15283.083679 C =15558.352780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 H 0.101 0.899 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.117 4.117 7 C -0.139 4.139 8 C 0.086 3.914 9 H 0.080 0.920 10 O -0.375 6.375 11 C 0.046 3.954 12 C 0.509 3.491 13 O -0.576 6.576 14 N -0.710 5.710 15 C 0.169 3.831 16 C -0.137 4.137 17 C -0.141 4.141 18 C 0.204 3.796 19 N -0.616 5.616 20 C -0.256 4.256 21 H 0.070 0.930 22 C -0.055 4.055 23 N -0.939 5.939 24 Si 0.967 3.033 25 H -0.285 1.285 26 H -0.294 1.294 27 H -0.272 1.272 28 C 0.138 3.862 29 C -0.084 4.084 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.041 0.959 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.042 0.958 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.415 0.585 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.112 0.888 47 H 0.056 0.944 48 H 0.016 0.984 49 H 0.250 0.750 50 H 0.059 0.941 51 H 0.030 0.970 52 H 0.090 0.910 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.795 20.999 -15.421 29.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 H 0.119 0.881 4 C -0.149 4.149 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.176 4.176 8 C 0.029 3.971 9 H 0.098 0.902 10 O -0.294 6.294 11 C -0.033 4.033 12 C 0.296 3.704 13 O -0.455 6.455 14 N -0.363 5.363 15 C 0.046 3.954 16 C -0.138 4.138 17 C -0.162 4.162 18 C 0.079 3.921 19 N -0.340 5.340 20 C -0.386 4.386 21 H 0.088 0.912 22 C -0.250 4.250 23 N -0.585 5.585 24 Si 0.795 3.205 25 H -0.212 1.212 26 H -0.220 1.220 27 H -0.197 1.197 28 C 0.013 3.987 29 C -0.122 4.122 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.252 0.748 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.130 0.870 47 H 0.074 0.926 48 H 0.034 0.966 49 H 0.059 0.941 50 H 0.077 0.923 51 H 0.048 0.952 52 H 0.108 0.892 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.503 20.513 -16.305 29.034 hybrid contribution -0.750 -1.020 1.084 1.666 sum 11.753 19.493 -15.222 27.383 Atomic orbital electron populations 1.21762 0.95168 1.01245 1.02077 1.21271 0.95821 0.99372 0.93788 0.88137 1.21493 0.95893 1.00072 0.97480 1.21507 0.95165 1.01051 0.97575 1.21411 0.99992 0.99089 0.94930 1.22041 0.95090 1.02153 0.98349 1.22393 0.93760 0.81901 0.99065 0.90196 1.88047 1.86798 1.29063 1.25446 1.22310 1.02909 0.90651 0.87451 1.20937 0.77082 0.88545 0.83818 1.90706 1.53354 1.73011 1.28391 1.45906 1.67201 1.13926 1.09290 1.20204 0.99225 0.81905 0.94107 1.20519 0.95782 1.02020 0.95483 1.22891 0.97179 0.98397 0.97696 1.19410 0.91034 0.93097 0.88531 1.44414 1.01729 1.22527 1.65297 1.19502 0.99745 0.92727 1.26601 0.91233 1.25724 0.98977 1.00903 0.99385 1.70159 1.10455 1.31075 1.46860 0.85268 0.76830 0.80484 0.77929 1.21210 1.22014 1.19653 1.21150 0.86440 0.96898 0.94187 1.20701 0.95614 1.00092 0.95842 0.91988 0.92133 0.94278 0.93984 0.91669 0.92510 0.90654 0.93940 0.91564 0.89172 0.91446 0.87907 0.87858 0.74848 0.91589 0.92313 0.87025 0.92603 0.96609 0.94129 0.92274 0.95166 0.89159 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.05 71.98 0.65 -1.51 16 2 C -0.08 -1.13 2.55 -10.79 -0.03 -1.16 16 3 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.11 -1.81 5.06 30.59 0.15 -1.65 16 5 C -0.12 -1.60 5.92 30.59 0.18 -1.42 16 6 C -0.12 -1.76 5.78 30.59 0.18 -1.59 16 7 C -0.14 -1.64 5.63 30.59 0.17 -1.46 16 8 C 0.09 1.19 2.35 30.59 0.07 1.26 16 9 H 0.08 0.79 7.79 -2.38 -0.02 0.77 16 10 O -0.37 -7.81 7.49 -129.94 -0.97 -8.78 16 11 C 0.05 0.78 6.23 71.23 0.44 1.22 16 12 C 0.51 12.83 7.91 87.66 0.69 13.53 16 13 O -0.58 -20.47 16.50 16.00 0.26 -20.20 16 14 N -0.71 -15.99 5.55 -466.79 -2.59 -18.58 16 15 C 0.17 4.67 5.65 85.63 0.48 5.15 16 16 C -0.14 -4.32 5.21 -14.91 -0.08 -4.40 16 17 C -0.14 -5.15 9.46 27.34 0.26 -4.90 16 18 C 0.20 9.69 5.23 85.42 0.45 10.13 16 19 N -0.62 -30.28 3.01 -703.37 -2.12 -32.40 16 20 C -0.26 -13.93 9.71 84.03 0.82 -13.11 16 21 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 22 C -0.06 -3.06 5.00 84.86 0.42 -2.64 16 23 N -0.94 -54.91 11.08 21.65 0.24 -54.67 16 24 Si 0.97 44.83 29.58 68.60 2.03 46.86 16 25 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 26 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 27 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 28 C 0.14 5.35 6.58 86.26 0.57 5.91 16 29 C -0.08 -2.61 5.96 29.65 0.18 -2.44 16 30 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.04 0.80 7.68 -2.39 -0.02 0.78 16 33 H 0.04 0.96 7.68 -2.39 -0.02 0.94 16 34 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.04 0.90 7.68 -2.38 -0.02 0.88 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 0.75 7.87 -2.39 -0.02 0.73 16 41 H 0.10 1.22 8.09 -2.39 -0.02 1.20 16 42 H 0.10 1.19 7.87 -2.39 -0.02 1.17 16 43 H 0.41 7.26 8.46 -92.70 -0.78 6.47 16 44 H 0.07 1.88 8.11 -2.39 -0.02 1.86 16 45 H 0.06 1.75 7.77 -2.39 -0.02 1.73 16 46 H 0.11 3.67 7.72 -2.91 -0.02 3.64 16 47 H 0.06 3.03 6.41 -2.39 -0.02 3.02 16 48 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 50 H 0.06 2.23 7.96 -2.38 -0.02 2.21 16 51 H 0.03 1.12 8.14 -2.39 -0.02 1.11 16 52 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 53 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -71.07 412.78 2.55 -68.52 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.08 Total: 18.31 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 5.61 Total: 0.93 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -4.47 Total: -105.65 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.71 Total: -28.98 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -71.07 2.55 -68.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486517252.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.811 kcal (2) G-P(sol) polarization free energy of solvation -71.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds