Wall clock time and date at job start Tue Mar 31 2020 20:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42907 * 109.47201 * 156.04315 * 3 2 1 5 5 C 1.42895 * 113.99813 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46772 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47202 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99961 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00221 * 180.02562 * 7 6 5 10 10 C 1.46930 * 120.62586 * 5.44909 * 9 7 6 11 11 C 1.53200 * 108.77257 * 126.37117 * 10 9 7 12 12 C 1.53039 * 109.31253 * 54.63210 * 11 10 9 13 13 C 1.53036 * 109.54038 * 298.63320 * 12 11 10 14 14 H 1.08998 * 109.49930 * 181.31565 * 13 12 11 15 15 C 1.52994 * 109.49991 * 301.41716 * 13 12 11 16 16 C 1.46923 * 120.63330 * 185.42623 * 9 7 6 17 17 H 1.09004 * 109.58530 * 113.70009 * 16 9 7 18 18 C 1.52994 * 109.58468 * 353.41846 * 16 9 7 19 19 C 1.53006 * 109.47034 * 180.02562 * 18 16 9 20 20 C 1.53002 * 109.47285 * 175.07095 * 19 18 16 21 21 N 1.46495 * 109.47389 * 180.02562 * 20 19 18 22 22 C 1.36936 * 120.00029 * 180.02562 * 21 20 19 23 23 H 1.07995 * 119.99847 * 359.97438 * 22 21 20 24 24 C 1.38816 * 119.99445 * 179.97438 * 22 21 20 25 25 N 1.31610 * 120.00451 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99370 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47242 * 269.99697 * 26 24 22 28 28 H 1.48498 * 109.47491 * 30.00011 * 26 24 22 29 29 H 1.48497 * 109.47021 * 150.00424 * 26 24 22 30 30 H 4.38455 * 5.44472 * 180.02562 * 4 1 2 31 31 H 1.09001 * 109.47339 * 36.04465 * 3 2 1 32 32 H 1.08997 * 109.47422 * 276.04355 * 3 2 1 33 33 H 1.09004 * 109.47212 * 60.00343 * 5 4 3 34 34 H 1.08993 * 109.47460 * 299.99548 * 5 4 3 35 35 H 1.09001 * 109.46978 * 59.99781 * 6 5 4 36 36 H 1.09002 * 109.47306 * 300.00457 * 6 5 4 37 37 H 1.08995 * 109.58408 * 246.15304 * 10 9 7 38 38 H 1.08996 * 109.59200 * 6.58356 * 10 9 7 39 39 H 1.09001 * 109.49448 * 174.58336 * 11 10 9 40 40 H 1.08999 * 109.49843 * 294.67886 * 11 10 9 41 41 H 1.08997 * 109.45893 * 58.65806 * 12 11 10 42 42 H 1.09003 * 109.45674 * 178.60979 * 12 11 10 43 43 H 1.09003 * 109.47755 * 179.83555 * 15 13 12 44 44 H 1.09001 * 109.47039 * 299.83937 * 15 13 12 45 45 H 1.09009 * 109.47284 * 59.83516 * 15 13 12 46 46 H 1.08997 * 109.47527 * 60.05149 * 18 16 9 47 47 H 1.08997 * 109.47304 * 300.04529 * 18 16 9 48 48 H 1.08999 * 109.46987 * 55.07295 * 19 18 16 49 49 H 1.09000 * 109.47417 * 295.07348 * 19 18 16 50 50 H 1.08999 * 109.46944 * 60.00175 * 20 19 18 51 51 H 1.09000 * 109.47100 * 300.00448 * 20 19 18 52 52 H 0.97001 * 120.00115 * 359.97438 * 21 20 19 53 53 H 0.96999 * 120.00476 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.2321 -0.5471 5 6 4.5463 1.3361 -0.5923 6 6 4.9402 2.6869 -1.1932 7 6 6.4424 2.7963 -1.2416 8 8 7.1302 1.8840 -0.8350 9 7 7.0215 3.9085 -1.7357 10 6 6.2066 5.0691 -2.1202 11 6 6.7451 6.3098 -1.4006 12 6 8.2377 6.4620 -1.7023 13 6 8.9926 5.2365 -1.1825 14 1 10.0584 5.3562 -1.3769 15 6 8.7602 5.0942 0.3230 16 6 8.4796 3.9837 -1.8996 17 1 8.7257 4.0405 -2.9600 18 6 9.1291 2.7406 -1.2883 19 6 10.6474 2.8218 -1.4599 20 6 11.3056 1.6418 -0.7421 21 7 12.7593 1.7199 -0.9058 22 6 13.5637 0.7636 -0.3458 23 1 13.1265 -0.0478 0.2169 24 6 14.9411 0.8374 -0.5015 25 7 15.4739 1.8261 -1.1877 26 14 16.0386 -0.4667 0.2631 27 1 16.4208 -0.0492 1.6360 28 1 15.3057 -1.7568 0.3240 29 1 17.2617 -0.6307 -0.5629 30 1 -1.0502 -0.0003 0.0003 31 1 3.0097 -0.8301 -0.6047 32 1 3.0094 -0.1074 1.0219 33 1 4.9498 0.5330 -1.2091 34 1 4.9487 1.2560 0.4174 35 1 4.5366 3.4902 -0.5769 36 1 4.5377 2.7666 -2.2031 37 1 6.2672 5.2170 -3.1984 38 1 5.1697 4.8998 -1.8302 39 1 6.2112 7.1934 -1.7502 40 1 6.6007 6.1984 -0.3259 41 1 8.3834 6.5486 -2.7790 42 1 8.6178 7.3579 -1.2115 43 1 9.2957 4.2195 0.6923 44 1 9.1252 5.9858 0.8328 45 1 7.6940 4.9759 0.5165 46 1 8.7541 1.8497 -1.7920 47 1 8.8854 2.6879 -0.2273 48 1 11.0118 3.7560 -1.0327 49 1 10.8956 2.7862 -2.5206 50 1 10.9412 0.7076 -1.1693 51 1 11.0574 1.6775 0.3187 52 1 13.1520 2.4486 -1.4116 53 1 14.9041 2.5035 -1.5844 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489063663.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:37 Heat of formation + Delta-G solvation = -35.043488 kcal Electronic energy + Delta-G solvation = -29614.651633 eV Core-core repulsion = 25680.625826 eV Total energy + Delta-G solvation = -3934.025807 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.91410 -39.43493 -38.66976 -37.54294 -35.68523 -34.47845 -34.36506 -33.18825 -32.28071 -30.90634 -28.56800 -27.81912 -27.12835 -25.89627 -24.79715 -24.50426 -23.06809 -22.01082 -20.95850 -19.57011 -19.40551 -19.18361 -18.18369 -17.55236 -17.22093 -16.89663 -16.86338 -16.51111 -16.30856 -15.87139 -15.81564 -15.46073 -15.35480 -15.16558 -14.83252 -14.63633 -14.26925 -13.99782 -13.76313 -13.59480 -13.30236 -13.21469 -12.96991 -12.74647 -12.65544 -12.63649 -12.52232 -12.46251 -12.19835 -12.00068 -11.90208 -11.84387 -11.64295 -11.54943 -11.46715 -11.43935 -11.23530 -11.14449 -10.96258 -10.60583 -10.06597 -9.50472 -9.17157 -8.46517 -5.39588 1.41452 1.54962 1.61760 1.66666 1.80241 1.81683 1.96201 2.67647 2.86250 3.34219 3.43584 3.61166 3.68222 3.75763 3.83961 3.88419 4.01141 4.08293 4.11649 4.14528 4.18890 4.24282 4.27937 4.40585 4.42739 4.47384 4.54121 4.59623 4.63308 4.65533 4.73039 4.78396 4.80122 4.82573 4.89001 4.93819 4.98338 5.01270 5.04065 5.11053 5.21292 5.22263 5.28153 5.39650 5.44346 5.51594 5.53016 5.73138 6.02345 6.44373 6.45326 6.57667 7.04397 7.20172 7.94431 8.06690 9.05879 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010241 B = 0.002375 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.359883 B =11786.897882 C =14157.739485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.240 4.240 3 C 0.167 3.833 4 O -0.397 6.397 5 C 0.079 3.921 6 C -0.129 4.129 7 C 0.510 3.490 8 O -0.568 6.568 9 N -0.602 5.602 10 C 0.100 3.900 11 C -0.133 4.133 12 C -0.112 4.112 13 C -0.105 4.105 14 H 0.072 0.928 15 C -0.141 4.141 16 C 0.157 3.843 17 H 0.077 0.923 18 C -0.084 4.084 19 C -0.119 4.119 20 C 0.163 3.837 21 N -0.757 5.757 22 C -0.343 4.343 23 H 0.061 0.939 24 C -0.103 4.103 25 N -0.971 5.971 26 Si 1.134 2.866 27 H -0.281 1.281 28 H -0.275 1.275 29 H -0.287 1.287 30 H 0.255 0.745 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.034 0.966 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.063 0.937 49 H 0.055 0.945 50 H 0.006 0.994 51 H 0.008 0.992 52 H 0.362 0.638 53 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.656 9.159 -1.545 33.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.240 4.240 3 C 0.092 3.908 4 O -0.317 6.317 5 C 0.003 3.997 6 C -0.169 4.169 7 C 0.299 3.701 8 O -0.448 6.448 9 N -0.335 5.335 10 C -0.021 4.021 11 C -0.171 4.171 12 C -0.150 4.150 13 C -0.124 4.124 14 H 0.091 0.909 15 C -0.198 4.198 16 C 0.054 3.946 17 H 0.094 0.906 18 C -0.122 4.122 19 C -0.157 4.157 20 C 0.037 3.963 21 N -0.402 5.402 22 C -0.474 4.474 23 H 0.079 0.921 24 C -0.294 4.294 25 N -0.619 5.619 26 Si 0.957 3.043 27 H -0.208 1.208 28 H -0.201 1.201 29 H -0.213 1.213 30 H 0.271 0.729 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.103 0.897 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.074 0.926 50 H 0.024 0.976 51 H 0.026 0.974 52 H 0.194 0.806 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -30.990 8.150 -1.075 32.061 hybrid contribution -0.990 0.349 -0.215 1.072 sum -31.980 8.499 -1.290 33.115 Atomic orbital electron populations 1.25877 0.96786 0.96287 0.98632 1.23038 0.94771 1.03624 1.02551 1.19197 0.84748 0.87189 0.99687 1.87808 1.21781 1.37806 1.84335 1.22115 0.79527 0.97396 1.00704 1.21481 0.90849 0.98948 1.05575 1.20843 0.90848 0.81727 0.76675 1.90828 1.64811 1.40873 1.48292 1.48171 1.06803 1.15281 1.63250 1.22097 0.95501 0.83930 1.00605 1.21964 0.95699 0.98259 1.01208 1.21546 0.95469 0.96468 1.01490 1.21544 1.00259 0.94991 0.95623 0.90947 1.21818 1.01556 1.00972 0.95476 1.21217 0.79265 0.94959 0.99175 0.90558 1.21840 0.91222 0.97246 1.01933 1.21805 0.96715 0.97451 0.99730 1.20611 0.82639 0.96572 0.96501 1.42606 1.02379 1.30332 1.64899 1.20449 0.91827 1.05364 1.29751 0.92099 1.27357 0.96489 1.04433 1.01161 1.70951 1.37169 1.14927 1.38826 0.82566 0.73939 0.72523 0.75252 1.20803 1.20078 1.21325 0.72905 0.89795 0.89776 0.92800 0.92781 0.86183 0.86217 0.89690 0.87303 0.88203 0.91625 0.90966 0.91059 0.94705 0.92211 0.92184 0.91838 0.91750 0.91818 0.92577 0.97550 0.97405 0.80625 0.94556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 19.25 74.32 1.43 -0.62 16 2 C -0.24 -4.13 13.73 31.12 0.43 -3.70 16 3 C 0.17 2.70 6.41 70.18 0.45 3.15 16 4 O -0.40 -7.43 10.30 -148.98 -1.53 -8.96 16 5 C 0.08 1.42 5.23 71.98 0.38 1.80 16 6 C -0.13 -1.85 4.48 29.85 0.13 -1.71 16 7 C 0.51 10.86 7.61 87.66 0.67 11.53 16 8 O -0.57 -17.27 11.39 -3.02 -0.03 -17.30 16 9 N -0.60 -10.85 2.41 -795.02 -1.92 -12.77 16 10 C 0.10 0.96 6.33 86.36 0.55 1.51 16 11 C -0.13 -1.27 5.74 30.67 0.18 -1.09 16 12 C -0.11 -1.52 5.43 30.62 0.17 -1.36 16 13 C -0.10 -2.15 2.31 -10.72 -0.02 -2.18 16 14 H 0.07 1.70 6.66 -2.39 -0.02 1.68 16 15 C -0.14 -3.18 8.20 71.98 0.59 -2.59 16 16 C 0.16 3.58 2.72 44.97 0.12 3.70 16 17 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 18 C -0.08 -2.64 2.65 30.59 0.08 -2.56 16 19 C -0.12 -4.32 5.13 30.60 0.16 -4.16 16 20 C 0.16 7.69 6.26 86.38 0.54 8.23 16 21 N -0.76 -42.61 5.60 -343.46 -1.92 -44.54 16 22 C -0.34 -21.08 9.99 84.03 0.84 -20.24 16 23 H 0.06 3.70 7.83 -2.91 -0.02 3.68 16 24 C -0.10 -6.35 5.50 84.86 0.47 -5.89 16 25 N -0.97 -63.27 13.70 21.65 0.30 -62.97 16 26 Si 1.13 54.55 29.92 68.60 2.05 56.61 16 27 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 28 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 29 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 30 H 0.25 1.01 7.80 -4.41 -0.03 0.97 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 34 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 35 H 0.12 1.24 7.46 -2.39 -0.02 1.23 16 36 H 0.12 1.28 8.12 -2.39 -0.02 1.26 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.11 0.57 5.96 -2.39 -0.01 0.56 16 39 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.07 0.74 6.33 -2.39 -0.02 0.73 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.03 0.98 6.34 -2.39 -0.02 0.97 16 44 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.06 1.25 5.97 -2.38 -0.01 1.23 16 46 H 0.06 2.24 6.45 -2.39 -0.02 2.22 16 47 H 0.06 2.24 5.21 -2.39 -0.01 2.22 16 48 H 0.06 2.26 6.33 -2.39 -0.02 2.25 16 49 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 51 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 52 H 0.36 20.54 6.50 -92.71 -0.60 19.94 16 53 H 0.24 15.85 6.77 -92.71 -0.63 15.23 16 Total: -1.00 -80.38 411.10 4.51 -75.87 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.43 Total: 30.24 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 7.15 Total: -16.18 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -3.54 Total: -120.28 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -1.57 Total: -26.26 kcal Atomic # 14 Polarization: 54.55 SS G_CDS: 2.05 Total: 56.61 kcal Total: -80.38 4.51 -75.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489063663.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.828 kcal (2) G-P(sol) polarization free energy of solvation -80.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds