Wall clock time and date at job start Tue Mar 31 2020 21:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.80402 * 2 1 4 4 C 1.54993 * 110.90714 * 123.63275 * 2 1 3 5 5 O 1.44473 * 103.44984 * 155.23756 * 4 2 1 6 6 C 1.43749 * 106.98407 * 319.94502 * 5 4 2 7 7 H 1.09004 * 109.87279 * 267.09522 * 6 5 4 8 8 C 1.50696 * 110.00749 * 146.00893 * 6 5 4 9 9 O 1.21285 * 119.99576 * 357.09395 * 8 6 5 10 10 N 1.34773 * 119.99904 * 177.09228 * 8 6 5 11 11 C 1.46927 * 120.63306 * 359.72056 * 10 8 6 12 12 C 1.53617 * 108.54231 * 126.36744 * 11 10 8 13 13 C 1.53047 * 109.24296 * 54.85960 * 12 11 10 14 14 N 1.46500 * 109.45060 * 178.49634 * 13 12 11 15 15 C 1.36937 * 119.99714 * 60.05963 * 14 13 12 16 16 H 1.08001 * 120.00359 * 15.95481 * 15 14 13 17 17 C 1.38815 * 119.99842 * 195.94853 * 15 14 13 18 18 N 1.31621 * 119.99477 * 21.40148 * 17 15 14 19 19 Si 1.86799 * 120.00284 * 201.40005 * 17 15 14 20 20 H 1.48501 * 109.47003 * 60.00465 * 19 17 15 21 21 H 1.48500 * 109.47043 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47108 * 300.00370 * 19 17 15 23 23 C 1.46495 * 119.99925 * 240.05806 * 14 13 12 24 24 C 1.53003 * 109.46845 * 84.11487 * 23 14 13 25 25 C 1.52995 * 117.49603 * 243.74484 * 24 23 14 26 26 C 1.53002 * 117.49356 * 175.08812 * 24 23 14 27 27 C 1.53042 * 109.53507 * 298.50808 * 13 12 11 28 28 C 1.46929 * 120.62847 * 180.02562 * 10 8 6 29 29 C 1.54106 * 107.29095 * 26.51204 * 6 5 4 30 30 H 1.08997 * 109.46886 * 180.69758 * 1 2 3 31 31 H 1.08994 * 109.47187 * 300.70422 * 1 2 3 32 32 H 1.09006 * 109.46638 * 60.70077 * 1 2 3 33 33 H 1.09007 * 110.61152 * 273.75532 * 4 2 1 34 34 H 1.09000 * 110.62255 * 36.75285 * 4 2 1 35 35 H 1.09002 * 109.58232 * 246.20198 * 11 10 8 36 36 H 1.08994 * 109.58209 * 6.62431 * 11 10 8 37 37 H 1.08997 * 109.63995 * 294.86830 * 12 11 10 38 38 H 1.09000 * 109.43436 * 174.71872 * 12 11 10 39 39 H 1.09000 * 109.46057 * 58.52449 * 13 12 11 40 40 H 0.97007 * 119.99726 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.47322 * 204.11490 * 23 14 13 42 42 H 1.09003 * 109.47369 * 324.11381 * 23 14 13 43 43 H 1.08997 * 115.54948 * 29.41861 * 24 23 14 44 44 H 1.08999 * 117.50460 * 0.02562 * 25 24 23 45 45 H 1.09000 * 117.49804 * 145.02578 * 25 24 23 46 46 H 1.09004 * 117.49476 * 214.97610 * 26 24 23 47 47 H 1.08997 * 117.50345 * 359.97066 * 26 24 23 48 48 H 1.08999 * 109.50252 * 301.41432 * 27 13 12 49 49 H 1.08998 * 109.52519 * 181.33155 * 27 13 12 50 50 H 1.09000 * 109.58490 * 353.37271 * 28 10 8 51 51 H 1.09000 * 109.58922 * 113.65181 * 28 10 8 52 52 H 1.09001 * 110.48577 * 239.29550 * 29 6 5 53 53 H 1.08994 * 110.48528 * 116.65284 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0831 -0.8019 1.2055 5 8 3.3949 -1.2136 0.7618 6 6 3.2724 -1.5873 -0.6209 7 1 3.0836 -2.6580 -0.7000 8 6 4.5345 -1.2334 -1.3644 9 8 5.4373 -0.6630 -0.7894 10 7 4.6600 -1.5507 -2.6682 11 6 3.5775 -2.2471 -3.3767 12 6 3.2176 -1.4399 -4.6332 13 6 4.4793 -1.2227 -5.4718 14 7 4.1348 -0.4842 -6.6892 15 6 3.5796 0.7643 -6.5986 16 1 3.6292 1.3112 -5.6686 17 6 2.9532 1.3271 -7.7021 18 7 2.5156 0.5558 -8.6748 19 14 2.7313 3.1789 -7.8067 20 1 4.0610 3.8394 -7.7735 21 1 2.0395 3.5237 -9.0747 22 1 1.9178 3.6457 -6.6555 23 6 4.3842 -1.0814 -8.0035 24 6 3.2152 -1.9942 -8.3790 25 6 3.5078 -3.4874 -8.5384 26 6 3.2313 -2.6254 -9.7727 27 6 5.5008 -0.4216 -4.6613 28 6 5.8846 -1.2127 -3.4064 29 6 2.0824 -0.8008 -1.2042 30 1 -0.3633 -1.0276 0.0125 31 1 -0.3633 0.5247 0.8835 32 1 -0.3633 0.5029 -0.8963 33 1 2.1576 -0.1660 2.0877 34 1 1.4565 -1.6704 1.4089 35 1 3.9107 -3.2447 -3.6629 36 1 2.7055 -2.3231 -2.7273 37 1 2.8035 -0.4746 -4.3423 38 1 2.4817 -1.9903 -5.2194 39 1 4.9068 -2.1885 -5.7415 40 1 2.0775 0.9490 -9.4458 41 1 4.4827 -0.2918 -8.7486 42 1 5.3043 -1.6649 -7.9688 43 1 2.2469 -1.7123 -7.9653 44 1 4.5330 -3.8197 -8.3752 45 1 2.7318 -4.1880 -8.2298 46 1 2.2735 -2.7592 -10.2756 47 1 4.0744 -2.3900 -10.4221 48 1 5.0652 0.5342 -4.3700 49 1 6.3900 -0.2466 -5.2670 50 1 6.5351 -0.6060 -2.7765 51 1 6.4030 -2.1278 -3.6927 52 1 1.3248 -1.4842 -1.5878 53 1 2.4203 -0.1246 -1.9894 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499528031.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:51 Heat of formation + Delta-G solvation = -41.719186 kcal Electronic energy + Delta-G solvation = -31359.908568 eV Core-core repulsion = 27425.593282 eV Total energy + Delta-G solvation = -3934.315287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.74796 -40.01011 -38.97775 -37.83597 -36.12621 -34.57314 -33.89421 -32.58191 -31.49838 -30.59954 -27.92392 -27.26045 -26.53450 -24.77030 -24.03087 -23.28617 -22.95082 -21.68520 -21.53784 -21.03197 -20.06110 -18.51511 -18.08801 -17.59017 -17.08232 -16.97915 -16.19666 -16.10764 -16.05018 -15.60839 -15.42116 -15.21137 -15.07615 -14.91016 -14.77228 -14.35455 -14.13506 -13.79132 -13.62663 -13.28114 -13.27193 -13.13003 -13.03623 -12.67081 -12.64646 -12.47853 -12.31999 -12.27638 -12.22909 -12.11086 -12.01168 -11.78669 -11.76686 -11.68558 -11.43617 -11.23487 -11.08739 -10.78756 -10.49053 -10.46024 -10.08956 -9.65156 -8.65420 -7.71766 -5.06493 1.45236 1.50430 1.50862 1.53894 1.81837 2.56711 2.92480 3.30793 3.36904 3.39272 3.55005 3.60688 3.76231 3.84632 3.97317 4.16690 4.19967 4.23048 4.23980 4.31677 4.41665 4.46254 4.49763 4.51680 4.58069 4.64151 4.70434 4.73116 4.79090 4.82962 4.84207 4.86867 4.88970 4.89742 4.97078 5.08309 5.09402 5.17624 5.19472 5.21032 5.34349 5.43171 5.47583 5.53234 5.60680 5.65304 5.73989 5.79437 5.84545 6.05356 6.38639 6.44746 7.11170 7.30001 8.04010 8.43974 9.28997 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011522 B = 0.003637 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.492520 B = 7696.391926 C = 8512.421637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 H 0.066 0.934 4 C 0.047 3.953 5 O -0.383 6.383 6 C 0.066 3.934 7 H 0.124 0.876 8 C 0.506 3.494 9 O -0.581 6.581 10 N -0.600 5.600 11 C 0.108 3.892 12 C -0.125 4.125 13 C 0.178 3.822 14 N -0.599 5.599 15 C -0.241 4.241 16 H 0.058 0.942 17 C -0.038 4.038 18 N -0.903 5.903 19 Si 0.934 3.066 20 H -0.293 1.293 21 H -0.298 1.298 22 H -0.287 1.287 23 C 0.212 3.788 24 C -0.096 4.096 25 C -0.190 4.190 26 C -0.186 4.186 27 C -0.129 4.129 28 C 0.121 3.879 29 C -0.141 4.141 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.242 0.758 41 H 0.042 0.958 42 H 0.025 0.975 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.035 0.965 49 H 0.066 0.934 50 H 0.069 0.931 51 H 0.090 0.910 52 H 0.118 0.882 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.471 -10.290 12.606 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 H 0.085 0.915 4 C -0.029 4.029 5 O -0.302 6.302 6 C 0.005 3.995 7 H 0.141 0.859 8 C 0.295 3.705 9 O -0.461 6.461 10 N -0.334 5.334 11 C -0.014 4.014 12 C -0.165 4.165 13 C 0.071 3.929 14 N -0.319 5.319 15 C -0.371 4.371 16 H 0.075 0.925 17 C -0.235 4.235 18 N -0.549 5.549 19 Si 0.766 3.234 20 H -0.220 1.220 21 H -0.224 1.224 22 H -0.214 1.214 23 C 0.086 3.914 24 C -0.117 4.117 25 C -0.227 4.227 26 C -0.224 4.224 27 C -0.169 4.169 28 C -0.002 4.002 29 C -0.179 4.179 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.043 0.957 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.054 0.946 49 H 0.085 0.915 50 H 0.088 0.912 51 H 0.108 0.892 52 H 0.136 0.864 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.881 -9.937 12.869 16.512 hybrid contribution -0.308 1.807 -0.810 2.005 sum -3.190 -8.130 12.059 14.889 Atomic orbital electron populations 1.21693 0.91555 1.03410 1.02684 1.22725 0.98302 0.99342 0.94098 0.91503 1.23960 0.82734 0.98808 0.97407 1.88971 1.31578 1.86631 1.23021 1.22729 0.92153 1.01581 0.83020 0.85907 1.21108 0.89078 0.78150 0.82173 1.90653 1.43439 1.43627 1.68386 1.48163 1.18614 1.57762 1.08831 1.22205 0.89763 0.95841 0.93603 1.22249 0.99112 0.99520 0.95625 1.20398 0.92998 0.93620 0.85865 1.44256 1.71107 1.15880 1.00656 1.19049 1.28792 0.92147 0.97144 0.92460 1.25178 0.99886 0.99469 0.98943 1.70301 1.41491 1.32611 1.10496 0.85857 0.76928 0.84475 0.76183 1.21999 1.22403 1.21407 1.20095 0.91358 0.93400 0.86508 1.22548 1.00710 0.90937 0.97481 1.23135 1.01868 0.94885 1.02819 1.22649 1.01344 1.06445 0.91913 1.22237 1.00086 0.98850 0.95750 1.21583 0.86235 1.00228 0.92159 1.23129 0.96388 0.99710 0.98685 0.90541 0.91146 0.92508 0.88010 0.89097 0.88687 0.87760 0.93951 0.91386 0.91132 0.94814 0.93953 0.95679 0.90767 0.88876 0.89202 0.90579 0.90243 0.94562 0.91545 0.91199 0.89192 0.86386 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.17 71.98 0.66 -1.11 16 2 C -0.13 -2.31 3.72 -9.49 -0.04 -2.34 16 3 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 4 C 0.05 0.83 7.18 72.66 0.52 1.35 16 5 O -0.38 -10.40 10.75 -130.33 -1.40 -11.80 16 6 C 0.07 1.55 2.96 30.22 0.09 1.64 16 7 H 0.12 2.09 7.75 -2.38 -0.02 2.07 16 8 C 0.51 15.78 6.89 87.66 0.60 16.38 16 9 O -0.58 -23.58 15.95 15.60 0.25 -23.33 16 10 N -0.60 -16.54 2.97 -818.00 -2.43 -18.97 16 11 C 0.11 2.39 5.87 86.51 0.51 2.90 16 12 C -0.13 -3.85 5.32 30.82 0.16 -3.69 16 13 C 0.18 6.18 2.59 45.02 0.12 6.29 16 14 N -0.60 -26.33 2.47 -677.86 -1.67 -28.00 16 15 C -0.24 -12.14 8.42 84.03 0.71 -11.43 16 16 H 0.06 2.97 6.91 -2.91 -0.02 2.95 16 17 C -0.04 -2.01 4.89 84.86 0.41 -1.60 16 18 N -0.90 -48.27 9.05 21.65 0.20 -48.08 16 19 Si 0.93 44.07 29.60 68.60 2.03 46.10 16 20 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 21 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 23 C 0.21 9.21 5.09 86.38 0.44 9.65 16 24 C -0.10 -3.89 4.45 -10.79 -0.05 -3.93 16 25 C -0.19 -5.99 10.18 30.62 0.31 -5.68 16 26 C -0.19 -6.64 10.25 30.62 0.31 -6.33 16 27 C -0.13 -4.38 5.31 30.69 0.16 -4.22 16 28 C 0.12 3.50 6.43 86.38 0.56 4.06 16 29 C -0.14 -2.84 4.54 31.59 0.14 -2.69 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.09 1.13 8.04 -2.39 -0.02 1.11 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.10 1.79 4.42 -2.39 -0.01 1.78 16 37 H 0.04 1.54 7.67 -2.39 -0.02 1.52 16 38 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.07 2.23 7.87 -2.39 -0.02 2.21 16 40 H 0.24 13.06 8.31 -92.70 -0.77 12.29 16 41 H 0.04 2.15 6.32 -2.38 -0.02 2.14 16 42 H 0.03 0.99 7.78 -2.39 -0.02 0.97 16 43 H 0.07 3.58 7.49 -2.39 -0.02 3.56 16 44 H 0.09 2.65 8.03 -2.39 -0.02 2.63 16 45 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 46 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 47 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 48 H 0.04 1.44 7.08 -2.39 -0.02 1.42 16 49 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 50 H 0.07 2.27 7.01 -2.39 -0.02 2.26 16 51 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 52 H 0.12 1.66 7.26 -2.39 -0.02 1.65 16 53 H 0.06 1.61 7.52 -2.39 -0.02 1.59 16 Total: -1.00 -66.13 402.51 3.48 -62.65 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.87 Total: 22.17 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 5.63 Total: -0.74 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -3.90 Total: -95.05 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -1.15 Total: -35.13 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -66.13 3.48 -62.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499528031.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.931 kcal (2) G-P(sol) polarization free energy of solvation -66.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds