Wall clock time and date at job start Tue Mar 31 2020 21:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.91510 * 2 1 4 4 C 1.54389 * 110.84470 * 123.58806 * 2 1 3 5 5 O 1.43237 * 107.58557 * 139.54599 * 4 2 1 6 6 C 1.43640 * 109.97441 * 1.70959 * 5 4 2 7 7 H 1.09000 * 110.31155 * 94.59129 * 6 5 4 8 8 C 1.50705 * 110.30908 * 216.65559 * 6 5 4 9 9 O 1.21277 * 120.00028 * 2.21157 * 8 6 5 10 10 N 1.34778 * 119.99979 * 182.20381 * 8 6 5 11 11 C 1.46932 * 120.62934 * 180.02562 * 10 8 6 12 12 C 1.53187 * 108.77485 * 233.59449 * 11 10 8 13 13 C 1.53047 * 109.31131 * 305.36326 * 12 11 10 14 14 N 1.46495 * 109.46222 * 181.39121 * 13 12 11 15 15 C 1.36942 * 119.99611 * 299.99678 * 14 13 12 16 16 H 1.07998 * 119.99960 * 39.23234 * 15 14 13 17 17 C 1.38809 * 119.99804 * 219.22305 * 15 14 13 18 18 N 1.31612 * 120.00257 * 25.98069 * 17 15 14 19 19 Si 1.86805 * 119.99808 * 205.98070 * 17 15 14 20 20 H 1.48498 * 109.47266 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47052 * 120.00162 * 19 17 15 22 22 H 1.48505 * 109.47044 * 240.00167 * 19 17 15 23 23 C 1.46503 * 120.00290 * 120.00126 * 14 13 12 24 24 C 1.52999 * 109.46751 * 275.55051 * 23 14 13 25 25 C 1.53004 * 117.49895 * 243.61946 * 24 23 14 26 26 C 1.52994 * 59.99848 * 252.51319 * 25 24 23 27 27 C 1.53039 * 109.53789 * 61.36429 * 13 12 11 28 28 C 1.46917 * 120.63012 * 359.97438 * 10 8 6 29 29 C 1.54940 * 105.22540 * 335.62190 * 6 5 4 30 30 H 1.08995 * 109.47154 * 297.87428 * 1 2 3 31 31 H 1.09002 * 109.46810 * 57.86910 * 1 2 3 32 32 H 1.08998 * 109.47288 * 177.86506 * 1 2 3 33 33 H 1.08995 * 109.82743 * 20.02981 * 4 2 1 34 34 H 1.08996 * 109.89981 * 259.09723 * 4 2 1 35 35 H 1.08995 * 109.58369 * 113.80308 * 11 10 8 36 36 H 1.09000 * 109.58734 * 353.37912 * 11 10 8 37 37 H 1.08997 * 109.49690 * 185.42164 * 12 11 10 38 38 H 1.08997 * 109.50140 * 65.31537 * 12 11 10 39 39 H 1.09004 * 109.45720 * 301.36387 * 13 12 11 40 40 H 0.97000 * 119.99937 * 5.37906 * 18 17 15 41 41 H 1.08993 * 109.47073 * 35.55160 * 23 14 13 42 42 H 1.08996 * 109.47116 * 155.55042 * 23 14 13 43 43 H 1.08996 * 115.55300 * 29.33170 * 24 23 14 44 44 H 1.09001 * 117.49773 * 0.02562 * 25 24 23 45 45 H 1.08996 * 117.49731 * 145.01932 * 25 24 23 46 46 H 1.09007 * 117.49872 * 252.50594 * 26 25 24 47 47 H 1.09003 * 117.51807 * 107.48193 * 26 25 24 48 48 H 1.09001 * 109.49194 * 58.59044 * 27 13 12 49 49 H 1.08999 * 109.49819 * 178.67934 * 27 13 12 50 50 H 1.08999 * 109.58769 * 246.19558 * 28 10 8 51 51 H 1.08996 * 109.58853 * 6.62115 * 28 10 8 52 52 H 1.08991 * 111.12977 * 154.31674 * 29 6 5 53 53 H 1.09004 * 111.12631 * 278.48186 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0794 -0.7982 1.2019 5 8 3.2043 -1.5554 0.7407 6 6 3.4463 -1.2784 -0.6478 7 1 4.1948 -0.4929 -0.7520 8 6 3.8980 -2.5277 -1.3594 9 8 3.9690 -3.5773 -0.7560 10 7 4.2228 -2.4786 -2.6665 11 6 4.6643 -3.6882 -3.3742 12 6 6.0074 -3.4002 -4.0523 13 6 5.8689 -2.1650 -4.9452 14 7 7.1425 -1.9060 -5.6212 15 6 8.2702 -1.6575 -4.8850 16 1 8.4540 -2.2102 -3.9756 17 6 9.1770 -0.6954 -5.3078 18 7 8.7724 0.3032 -6.0637 19 14 10.9716 -0.8179 -4.8039 20 1 11.1675 -2.0235 -3.9594 21 1 11.8208 -0.9199 -6.0179 22 1 11.3531 0.3929 -4.0333 23 6 7.2099 -1.9129 -7.0846 24 6 7.3932 -3.3488 -7.5799 25 6 8.6887 -3.6796 -8.3237 26 6 7.3690 -3.5831 -9.0917 27 6 5.4907 -0.9543 -4.0889 28 6 4.1411 -1.2147 -3.4112 29 6 2.0840 -0.8014 -1.2109 30 1 -0.3633 0.4804 0.9084 31 1 -0.3633 0.5466 -0.8703 32 1 -0.3634 -1.0269 -0.0383 33 1 1.3106 -1.4715 1.5810 34 1 2.3925 -0.1135 1.9900 35 1 3.9255 -3.9609 -4.1276 36 1 4.7822 -4.5054 -2.6625 37 1 6.2994 -4.2570 -4.6595 38 1 6.7667 -3.2164 -3.2923 39 1 5.0919 -2.3401 -5.6893 40 1 7.8288 0.4108 -6.2610 41 1 6.2861 -1.5029 -7.4927 42 1 8.0531 -1.3050 -7.4124 43 1 6.9658 -4.1238 -6.9437 44 1 9.4106 -2.8743 -8.4597 45 1 9.1140 -4.6723 -8.1766 46 1 6.9261 -4.5124 -9.4500 47 1 7.2221 -2.7142 -9.7333 48 1 6.2550 -0.7935 -3.3285 49 1 5.4152 -0.0702 -4.7220 50 1 3.3597 -1.2862 -4.1678 51 1 3.9137 -0.3998 -2.7240 52 1 2.2217 -0.1580 -2.0799 53 1 1.4394 -1.6475 -1.4491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499528033.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:55 Heat of formation + Delta-G solvation = -55.803189 kcal Electronic energy + Delta-G solvation = -30905.999067 eV Core-core repulsion = 26971.073052 eV Total energy + Delta-G solvation = -3934.926015 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.75269 -40.12470 -39.12168 -38.02052 -36.37566 -34.61550 -33.98517 -32.60415 -31.63997 -30.69860 -27.96229 -27.30559 -26.47031 -24.88788 -24.07750 -23.41871 -23.12982 -21.87815 -21.45241 -21.14159 -20.13590 -19.04072 -18.46256 -17.58560 -17.08349 -16.87123 -16.52233 -16.24222 -16.12653 -15.52338 -15.42298 -15.34978 -15.19331 -14.90262 -14.78961 -14.37323 -14.27900 -13.92814 -13.79183 -13.64592 -13.44098 -13.32915 -13.16239 -12.78562 -12.60934 -12.48626 -12.37441 -12.23625 -12.17653 -12.10876 -11.97183 -11.96060 -11.71938 -11.67997 -11.52074 -11.34340 -11.01419 -10.96095 -10.60920 -10.45356 -10.30756 -9.72268 -8.74016 -8.06882 -5.42503 1.42752 1.56492 1.60655 1.76977 1.77541 2.63480 2.84165 3.00708 3.21646 3.27273 3.45338 3.53125 3.74353 3.88086 3.92882 3.99275 4.04189 4.10996 4.15269 4.18279 4.24256 4.27333 4.30929 4.40048 4.51287 4.58456 4.64056 4.69693 4.70212 4.72840 4.76051 4.79164 4.81183 4.81956 4.89951 4.96165 5.00443 5.02800 5.08846 5.10634 5.19899 5.21986 5.31262 5.38032 5.38679 5.52898 5.57770 5.59866 5.87346 6.07072 6.32307 6.53656 7.05188 7.23816 7.87359 8.33146 9.06615 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.003053 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.940172 B = 9168.341888 C = 9877.053093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 H 0.106 0.894 4 C 0.042 3.958 5 O -0.392 6.392 6 C 0.063 3.937 7 H 0.106 0.894 8 C 0.508 3.492 9 O -0.580 6.580 10 N -0.599 5.599 11 C 0.122 3.878 12 C -0.124 4.124 13 C 0.174 3.826 14 N -0.597 5.597 15 C -0.332 4.332 16 H 0.025 0.975 17 C -0.053 4.053 18 N -0.928 5.928 19 Si 1.094 2.906 20 H -0.286 1.286 21 H -0.288 1.288 22 H -0.293 1.293 23 C 0.175 3.825 24 C -0.163 4.163 25 C -0.188 4.188 26 C -0.164 4.164 27 C -0.127 4.127 28 C 0.112 3.888 29 C -0.136 4.136 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.030 0.970 39 H 0.070 0.930 40 H 0.259 0.741 41 H 0.038 0.962 42 H 0.045 0.955 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.094 0.906 46 H 0.109 0.891 47 H 0.091 0.909 48 H 0.034 0.966 49 H 0.063 0.937 50 H 0.101 0.899 51 H 0.104 0.896 52 H 0.120 0.880 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.657 0.173 3.776 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.136 4.136 3 H 0.124 0.876 4 C -0.034 4.034 5 O -0.311 6.311 6 C 0.003 3.997 7 H 0.123 0.877 8 C 0.297 3.703 9 O -0.460 6.460 10 N -0.332 5.332 11 C -0.001 4.001 12 C -0.164 4.164 13 C 0.068 3.932 14 N -0.317 5.317 15 C -0.463 4.463 16 H 0.043 0.957 17 C -0.252 4.252 18 N -0.568 5.568 19 Si 0.922 3.078 20 H -0.211 1.211 21 H -0.214 1.214 22 H -0.220 1.220 23 C 0.049 3.951 24 C -0.183 4.183 25 C -0.225 4.225 26 C -0.201 4.201 27 C -0.167 4.167 28 C -0.010 4.010 29 C -0.173 4.173 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.113 0.887 46 H 0.128 0.872 47 H 0.110 0.890 48 H 0.053 0.947 49 H 0.081 0.919 50 H 0.119 0.881 51 H 0.122 0.878 52 H 0.138 0.862 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.001 0.183 4.044 16.505 hybrid contribution -0.663 -0.726 0.348 1.043 sum -16.664 -0.544 4.391 17.242 Atomic orbital electron populations 1.21712 0.91976 1.02405 1.03472 1.22766 0.98336 1.00216 0.92258 0.87582 1.23561 0.87697 0.94589 0.97585 1.88499 1.50819 1.68503 1.23301 1.22911 1.00490 0.93519 0.82809 0.87672 1.21032 0.76839 0.90626 0.81834 1.90649 1.55182 1.33652 1.66503 1.48140 1.64995 1.11263 1.08842 1.21580 0.95727 0.86974 0.95842 1.22152 0.95856 0.99620 0.98812 1.20491 0.87618 0.92207 0.92868 1.44027 1.04707 1.82317 1.00647 1.19616 1.01110 1.16750 1.08783 0.95736 1.26642 1.07563 0.91371 0.99667 1.70819 1.17869 1.27214 1.40945 0.83125 0.73469 0.75372 0.75878 1.21126 1.21401 1.21988 1.20447 0.98726 0.92345 0.83622 1.23041 1.01536 0.99884 0.93866 1.22866 0.91522 1.01933 1.06205 1.22955 1.00092 1.03363 0.93707 1.22151 0.96026 0.99378 0.99127 1.22136 0.97593 0.84703 0.96590 1.23502 0.92481 1.01204 1.00160 0.91023 0.90721 0.92812 0.90932 0.89810 0.88938 0.91147 0.91661 0.95156 0.91222 0.93089 0.94382 0.93715 0.89163 0.91148 0.88711 0.87225 0.89012 0.94691 0.91880 0.88139 0.87828 0.86151 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.14 71.98 0.66 -0.65 16 2 C -0.12 -1.52 3.60 -9.49 -0.03 -1.55 16 3 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 4 C 0.04 0.78 7.41 72.45 0.54 1.31 16 5 O -0.39 -11.43 10.61 -130.49 -1.38 -12.81 16 6 C 0.06 1.59 2.91 30.51 0.09 1.67 16 7 H 0.11 2.44 7.50 -2.39 -0.02 2.42 16 8 C 0.51 16.45 7.11 87.66 0.62 17.07 16 9 O -0.58 -24.12 15.96 15.47 0.25 -23.87 16 10 N -0.60 -17.22 2.97 -818.82 -2.43 -19.65 16 11 C 0.12 3.65 6.43 86.36 0.56 4.20 16 12 C -0.12 -4.44 5.30 30.67 0.16 -4.28 16 13 C 0.17 6.36 2.59 45.02 0.12 6.48 16 14 N -0.60 -26.85 2.11 -677.89 -1.43 -28.28 16 15 C -0.33 -17.50 8.12 84.03 0.68 -16.82 16 16 H 0.02 1.41 6.95 -2.91 -0.02 1.39 16 17 C -0.05 -2.88 4.74 84.86 0.40 -2.48 16 18 N -0.93 -52.98 12.35 21.65 0.27 -52.71 16 19 Si 1.09 51.16 29.99 68.60 2.06 53.21 16 20 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 23 C 0.17 7.45 4.98 86.38 0.43 7.88 16 24 C -0.16 -5.93 6.01 -10.79 -0.06 -5.99 16 25 C -0.19 -6.54 10.18 30.59 0.31 -6.23 16 26 C -0.16 -4.79 10.25 30.59 0.31 -4.47 16 27 C -0.13 -4.29 5.31 30.69 0.16 -4.12 16 28 C 0.11 2.63 5.60 86.38 0.48 3.11 16 29 C -0.14 -2.18 5.26 32.09 0.17 -2.01 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.59 8.12 -2.39 -0.02 0.57 16 33 H 0.07 1.29 7.81 -2.39 -0.02 1.27 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.07 2.36 7.01 -2.39 -0.02 2.34 16 37 H 0.06 2.32 8.08 -2.39 -0.02 2.30 16 38 H 0.03 1.30 7.07 -2.39 -0.02 1.28 16 39 H 0.07 2.26 7.87 -2.38 -0.02 2.24 16 40 H 0.26 14.82 7.39 -92.71 -0.69 14.13 16 41 H 0.04 1.51 8.04 -2.39 -0.02 1.49 16 42 H 0.04 2.25 5.57 -2.39 -0.01 2.23 16 43 H 0.09 3.29 8.08 -2.39 -0.02 3.27 16 44 H 0.07 2.73 8.03 -2.39 -0.02 2.71 16 45 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 46 H 0.11 2.62 8.14 -2.38 -0.02 2.60 16 47 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 48 H 0.03 1.44 7.71 -2.39 -0.02 1.42 16 49 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 50 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 51 H 0.10 1.93 4.50 -2.39 -0.01 1.92 16 52 H 0.12 1.32 6.47 -2.39 -0.02 1.30 16 53 H 0.08 1.39 7.94 -2.39 -0.02 1.37 16 Total: -1.00 -71.02 405.78 3.88 -67.14 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.96 Total: 23.85 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 5.60 Total: -6.88 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -3.59 Total: -100.64 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -1.14 Total: -36.68 kcal Atomic # 14 Polarization: 51.16 SS G_CDS: 2.06 Total: 53.21 kcal Total: -71.02 3.88 -67.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499528033.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.332 kcal (2) G-P(sol) polarization free energy of solvation -71.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds