Wall clock time and date at job start Tue Mar 31 2020 21:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.45722 * 2 1 4 4 C 1.53036 * 109.46229 * 240.02028 * 2 1 3 5 5 C 1.53172 * 109.32792 * 178.61321 * 4 2 1 6 6 N 1.46925 * 108.76537 * 54.64391 * 5 4 2 7 7 C 1.34778 * 120.62677 * 126.36631 * 6 5 4 8 8 O 1.21284 * 119.99671 * 184.76354 * 7 6 5 9 9 C 1.50700 * 120.00008 * 4.77569 * 7 6 5 10 10 H 1.08999 * 110.46046 * 57.38819 * 9 7 6 11 11 C 1.54510 * 110.50983 * 294.63235 * 9 7 6 12 12 C 1.54470 * 104.06591 * 241.35797 * 11 9 7 13 13 O 1.44419 * 104.80529 * 336.02095 * 12 11 9 14 14 C 1.44432 * 105.27502 * 40.51230 * 13 12 11 15 15 H 1.09006 * 110.36967 * 78.31718 * 14 13 12 16 16 C 1.53002 * 110.46554 * 200.60955 * 14 13 12 17 17 C 1.52995 * 117.49936 * 4.05815 * 16 14 13 18 18 C 1.52996 * 117.49933 * 295.43289 * 16 14 13 19 19 C 1.46923 * 118.74233 * 306.39328 * 6 5 4 20 20 H 1.09003 * 109.58892 * 293.82229 * 19 6 5 21 21 C 1.52996 * 109.70544 * 173.46457 * 19 6 5 22 22 N 1.46502 * 109.47195 * 179.89723 * 21 19 6 23 23 C 1.36937 * 119.99657 * 174.68835 * 22 21 19 24 24 H 1.07996 * 120.00405 * 359.97438 * 23 22 21 25 25 C 1.38815 * 119.99554 * 180.02562 * 23 22 21 26 26 N 1.31624 * 119.99816 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 120.00203 * 359.97438 * 25 23 22 28 28 H 1.48497 * 109.47015 * 90.00042 * 27 25 23 29 29 H 1.48499 * 109.47378 * 209.99933 * 27 25 23 30 30 H 1.48500 * 109.47159 * 330.00375 * 27 25 23 31 31 C 1.53046 * 109.45847 * 119.96579 * 2 1 3 32 32 H 1.08994 * 109.47249 * 300.00577 * 1 2 3 33 33 H 1.09000 * 109.46625 * 60.00875 * 1 2 3 34 34 H 1.09001 * 109.46773 * 179.97438 * 1 2 3 35 35 H 1.08991 * 109.50278 * 298.58033 * 4 2 1 36 36 H 1.09003 * 109.49993 * 58.68079 * 4 2 1 37 37 H 1.09004 * 109.58647 * 294.86572 * 5 4 2 38 38 H 1.08995 * 109.70967 * 174.50131 * 5 4 2 39 39 H 1.08999 * 110.51101 * 0.02562 * 11 9 7 40 40 H 1.09000 * 110.50849 * 122.71165 * 11 9 7 41 41 H 1.09006 * 110.37395 * 217.18942 * 12 11 9 42 42 H 1.08997 * 110.37224 * 94.85432 * 12 11 9 43 43 H 1.08997 * 115.54630 * 149.76644 * 16 14 13 44 44 H 1.08998 * 117.49899 * 359.97438 * 17 16 14 45 45 H 1.09004 * 117.49719 * 145.02092 * 17 16 14 46 46 H 1.09002 * 117.49874 * 214.98410 * 18 16 14 47 47 H 1.08998 * 117.50104 * 359.97438 * 18 16 14 48 48 H 1.08999 * 109.47247 * 299.90072 * 21 19 6 49 49 H 1.09002 * 109.47534 * 59.89534 * 21 19 6 50 50 H 0.96998 * 119.99758 * 354.68543 * 22 21 19 51 51 H 0.97001 * 119.99922 * 179.97438 * 26 25 23 52 52 H 1.09000 * 109.49512 * 301.32816 * 31 2 1 53 53 H 1.08997 * 109.49526 * 61.39039 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5712 -0.6890 -1.2643 6 7 4.0677 -1.2492 -0.0001 7 6 4.9610 -2.2584 -0.0001 8 8 5.2979 -2.7700 1.0467 9 6 5.5415 -2.7508 -1.3007 10 1 6.0313 -1.9351 -1.8325 11 6 4.4409 -3.3889 -2.1776 12 6 4.9003 -4.8536 -2.3498 13 8 6.3298 -4.8183 -2.1472 14 6 6.5357 -3.9056 -1.0469 15 1 6.3129 -4.3969 -0.0997 16 6 7.9730 -3.3812 -1.0487 17 6 8.8784 -3.8055 -2.2067 18 6 9.0949 -4.3939 -0.8111 19 6 3.5714 -0.6888 1.2642 20 1 3.9144 0.3407 1.3672 21 6 4.0910 -1.5224 2.4372 22 7 3.5953 -0.9580 3.6949 23 6 3.8414 -1.6016 4.8782 24 1 4.4006 -2.5255 4.8843 25 6 3.3712 -1.0670 6.0699 26 7 3.6082 -1.6854 7.2074 27 14 2.4034 0.5307 6.0593 28 1 0.9564 0.2319 5.9108 29 1 2.6306 1.2555 7.3353 30 1 2.8537 1.3747 4.9235 31 6 2.0399 -0.7208 1.2501 32 1 -0.3633 0.5139 0.8899 33 1 -0.3632 0.5137 -0.8901 34 1 -0.3633 -1.0277 -0.0005 35 1 1.6978 -1.7558 -1.2381 36 1 1.6576 -0.2210 -2.1398 37 1 3.9142 0.3405 -1.3675 38 1 3.9435 -1.2835 -2.0986 39 1 3.4769 -3.3478 -1.6705 40 1 4.3860 -2.8896 -3.1449 41 1 4.6680 -5.2086 -3.3540 42 1 4.4267 -5.4902 -1.6025 43 1 8.1076 -2.3773 -0.6459 44 1 8.4502 -4.4586 -2.9671 45 1 9.6089 -3.0806 -2.5662 46 1 9.9677 -4.0563 -0.2523 47 1 8.8090 -5.4338 -0.6531 48 1 3.7402 -2.5495 2.3366 49 1 5.1809 -1.5093 2.4377 50 1 3.0927 -0.1283 3.6894 51 1 3.2799 -1.3117 8.0402 52 1 1.6573 -0.2206 2.1399 53 1 1.6971 -1.7554 1.2387 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565969557.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:00 Heat of formation + Delta-G solvation = -50.902123 kcal Electronic energy + Delta-G solvation = -31436.430248 eV Core-core repulsion = 27501.716759 eV Total energy + Delta-G solvation = -3934.713489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.14303 -40.40876 -38.62635 -37.41833 -36.85914 -35.10271 -34.26861 -33.11783 -31.66016 -30.25403 -29.29588 -27.45840 -25.68758 -24.54394 -24.34320 -23.24004 -22.94232 -22.56622 -21.51581 -21.22462 -20.13977 -19.50796 -18.18126 -17.55399 -17.14869 -16.80485 -16.48966 -16.35825 -16.02788 -15.77770 -15.56350 -15.40315 -15.16221 -14.84096 -14.78337 -14.59134 -14.49010 -14.18176 -13.85453 -13.71918 -13.45423 -13.01219 -12.89825 -12.86893 -12.77830 -12.55524 -12.40368 -12.34023 -12.33252 -12.21188 -12.06939 -11.94778 -11.87630 -11.81822 -11.40045 -11.27420 -11.17889 -11.10532 -11.02969 -10.65882 -10.19328 -9.65710 -9.25061 -8.05442 -5.39807 1.31890 1.38499 1.45883 1.58134 1.84916 2.45459 2.76774 2.88457 3.24798 3.41049 3.44247 3.54632 3.72053 3.72827 3.81627 3.90057 3.98112 3.98760 4.07649 4.08300 4.15339 4.22165 4.29141 4.32967 4.39185 4.51663 4.56467 4.65862 4.67742 4.77523 4.79183 4.79990 4.83613 4.88645 4.91311 4.94748 4.99410 5.03571 5.07334 5.10901 5.16972 5.20102 5.22190 5.27178 5.34878 5.39098 5.53642 5.62919 5.72054 5.79929 6.17313 6.43068 7.02679 7.19919 7.78434 8.02324 9.17144 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010841 B = 0.003879 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.199815 B = 7216.488229 C = 9172.306693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.082 0.918 4 C -0.123 4.123 5 C 0.095 3.905 6 N -0.599 5.599 7 C 0.506 3.494 8 O -0.567 6.567 9 C -0.124 4.124 10 H 0.135 0.865 11 C -0.137 4.137 12 C 0.038 3.962 13 O -0.376 6.376 14 C 0.120 3.880 15 H 0.052 0.948 16 C -0.165 4.165 17 C -0.142 4.142 18 C -0.187 4.187 19 C 0.145 3.855 20 H 0.078 0.922 21 C 0.180 3.820 22 N -0.757 5.757 23 C -0.235 4.235 24 H 0.040 0.960 25 C -0.066 4.066 26 N -0.987 5.987 27 Si 0.963 3.037 28 H -0.272 1.272 29 H -0.291 1.291 30 H -0.249 1.249 31 C -0.117 4.117 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.080 0.920 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.045 0.955 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.110 0.890 46 H 0.100 0.900 47 H 0.084 0.916 48 H 0.012 0.988 49 H 0.022 0.978 50 H 0.364 0.636 51 H 0.259 0.741 52 H 0.059 0.941 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.873 3.553 -31.962 32.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.100 0.900 4 C -0.161 4.161 5 C -0.026 4.026 6 N -0.333 5.333 7 C 0.295 3.705 8 O -0.446 6.446 9 C -0.146 4.146 10 H 0.153 0.847 11 C -0.175 4.175 12 C -0.038 4.038 13 O -0.295 6.295 14 C 0.061 3.939 15 H 0.070 0.930 16 C -0.183 4.183 17 C -0.179 4.179 18 C -0.224 4.224 19 C 0.041 3.959 20 H 0.096 0.904 21 C 0.055 3.945 22 N -0.405 5.405 23 C -0.366 4.366 24 H 0.058 0.942 25 C -0.256 4.256 26 N -0.638 5.638 27 Si 0.788 3.212 28 H -0.198 1.198 29 H -0.217 1.217 30 H -0.174 1.174 31 C -0.156 4.156 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.105 0.895 38 H 0.134 0.866 39 H 0.099 0.901 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.064 0.936 43 H 0.128 0.872 44 H 0.122 0.878 45 H 0.128 0.872 46 H 0.118 0.882 47 H 0.103 0.897 48 H 0.030 0.970 49 H 0.040 0.960 50 H 0.198 0.802 51 H 0.068 0.932 52 H 0.077 0.923 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.441 2.989 -31.447 31.592 hybrid contribution -0.517 0.387 1.713 1.831 sum -0.958 3.376 -29.734 29.940 Atomic orbital electron populations 1.21793 0.94228 1.01765 1.02316 1.21157 0.96408 0.99689 0.93531 0.90009 1.21979 0.94181 1.01444 0.98468 1.22278 0.95067 1.00809 0.84432 1.48164 1.42718 1.34898 1.07500 1.21053 0.78856 0.79307 0.91239 1.90866 1.61757 1.57629 1.34304 1.22663 0.97775 1.00572 0.93574 0.84735 1.23087 0.97269 0.95868 1.01273 1.23598 0.80620 0.96338 1.03257 1.89086 1.23788 1.64984 1.51625 1.22145 0.93404 0.88365 0.89942 0.92986 1.22255 0.89809 0.99660 1.06619 1.22903 1.00772 1.03149 0.91082 1.22979 0.99928 0.98342 1.01115 1.21298 0.94810 0.96805 0.82954 0.90404 1.21064 0.95907 0.94142 0.83410 1.42853 1.67309 1.27353 1.03020 1.18923 1.28098 1.04254 0.85333 0.94232 1.25607 1.02594 1.03128 0.94313 1.69920 1.52953 1.42768 0.98130 0.85307 0.78849 0.79434 0.77588 1.19771 1.21742 1.17354 1.21959 0.93279 1.00913 0.99444 0.93544 0.90354 0.93272 0.91920 0.87171 0.89471 0.86598 0.90104 0.85553 0.85761 0.93635 0.87161 0.87841 0.87202 0.88164 0.89738 0.96969 0.96013 0.80175 0.93189 0.92274 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.19 71.98 0.66 -1.65 16 2 C -0.09 -1.58 2.68 -10.77 -0.03 -1.61 16 3 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 4 C -0.12 -1.47 5.36 30.66 0.16 -1.31 16 5 C 0.09 1.23 5.76 86.36 0.50 1.72 16 6 N -0.60 -14.71 2.97 -795.08 -2.36 -17.08 16 7 C 0.51 14.64 6.81 87.66 0.60 15.24 16 8 O -0.57 -23.38 10.87 -3.04 -0.03 -23.42 16 9 C -0.12 -2.44 2.13 -10.52 -0.02 -2.46 16 10 H 0.13 1.94 7.76 -2.39 -0.02 1.92 16 11 C -0.14 -1.79 4.87 31.61 0.15 -1.63 16 12 C 0.04 0.61 7.63 72.48 0.55 1.17 16 13 O -0.38 -8.28 9.79 -148.98 -1.46 -9.74 16 14 C 0.12 2.96 2.99 31.10 0.09 3.06 16 15 H 0.05 1.74 6.90 -2.38 -0.02 1.72 16 16 C -0.17 -3.76 5.60 -10.80 -0.06 -3.82 16 17 C -0.14 -2.57 9.89 30.59 0.30 -2.27 16 18 C -0.19 -4.12 10.24 30.59 0.31 -3.81 16 19 C 0.15 4.63 3.03 44.97 0.14 4.77 16 20 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 21 C 0.18 8.29 4.11 86.38 0.35 8.64 16 22 N -0.76 -39.47 5.08 -343.45 -1.75 -41.21 16 23 C -0.24 -14.92 10.47 84.03 0.88 -14.04 16 24 H 0.04 2.84 8.06 -2.91 -0.02 2.82 16 25 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 26 N -0.99 -67.02 13.97 21.65 0.30 -66.71 16 27 Si 0.96 47.25 27.74 68.60 1.90 49.15 16 28 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 29 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 30 H -0.25 -10.92 6.52 99.48 0.65 -10.27 16 31 C -0.12 -3.31 4.40 30.67 0.14 -3.18 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.12 0.89 4.36 -2.39 -0.01 0.88 16 39 H 0.08 1.15 7.30 -2.39 -0.02 1.13 16 40 H 0.13 0.68 7.64 -2.39 -0.02 0.66 16 41 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 42 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.11 2.53 8.13 -2.39 -0.02 2.51 16 44 H 0.10 1.90 7.07 -2.39 -0.02 1.89 16 45 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.01 0.63 7.06 -2.39 -0.02 0.62 16 49 H 0.02 1.13 6.43 -2.39 -0.02 1.12 16 50 H 0.36 17.37 4.66 -92.71 -0.43 16.93 16 51 H 0.26 16.55 8.31 -92.71 -0.77 15.78 16 52 H 0.06 1.88 7.20 -2.39 -0.02 1.86 16 53 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -84.41 396.69 2.20 -82.21 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.40 Total: 31.62 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 5.20 Total: -4.83 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -3.81 Total: -125.00 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -1.49 Total: -33.15 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.90 Total: 49.15 kcal Total: -84.41 2.20 -82.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565969557.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.306 kcal (2) G-P(sol) polarization free energy of solvation -84.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds