Wall clock time and date at job start Tue Mar 31 2020 20:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.52468 * 2 1 4 4 C 1.53044 * 109.49694 * 239.92014 * 2 1 3 5 5 C 1.53038 * 109.53596 * 301.41336 * 4 2 1 6 6 C 1.53189 * 109.31575 * 298.63353 * 5 4 2 7 7 N 1.46928 * 108.77476 * 54.63731 * 6 5 4 8 8 C 1.34774 * 120.62911 * 126.41452 * 7 6 5 9 9 O 1.21282 * 119.99815 * 184.93483 * 8 7 6 10 10 C 1.50693 * 120.00165 * 4.93738 * 8 7 6 11 11 C 1.53004 * 119.81207 * 269.05526 * 10 8 7 12 12 C 1.54508 * 122.36834 * 196.67603 * 10 8 7 13 13 H 1.09008 * 122.36456 * 359.45321 * 12 10 8 14 14 C 1.54474 * 104.06568 * 223.21720 * 12 10 8 15 15 O 1.44424 * 104.80456 * 336.02107 * 14 12 10 16 16 C 1.44419 * 105.27408 * 40.50879 * 15 14 12 17 17 C 1.46923 * 118.73650 * 306.39046 * 7 6 5 18 18 H 1.08994 * 109.58884 * 293.82396 * 17 7 6 19 19 C 1.53005 * 109.70304 * 173.46596 * 17 7 6 20 20 C 1.52997 * 109.47397 * 180.92669 * 19 17 7 21 21 C 1.53000 * 109.47354 * 181.79668 * 20 19 17 22 22 N 1.46495 * 109.47111 * 180.02562 * 21 20 19 23 23 C 1.36934 * 119.99867 * 179.97438 * 22 21 20 24 24 H 1.07998 * 120.00011 * 359.97438 * 23 22 21 25 25 C 1.38822 * 119.99897 * 180.02562 * 23 22 21 26 26 N 1.31620 * 119.99767 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99596 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47412 * 359.97438 * 27 25 23 29 29 H 1.48504 * 109.46696 * 120.00194 * 27 25 23 30 30 H 1.48501 * 109.46863 * 239.99709 * 27 25 23 31 31 H 1.09004 * 109.47395 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46951 * 300.07497 * 1 2 3 33 33 H 1.08994 * 109.47565 * 60.07722 * 1 2 3 34 34 H 1.08999 * 109.45695 * 181.39103 * 4 2 1 35 35 H 1.08997 * 109.44778 * 61.42634 * 4 2 1 36 36 H 1.09003 * 109.49507 * 178.67804 * 5 4 2 37 37 H 1.09001 * 109.50127 * 58.59104 * 5 4 2 38 38 H 1.09004 * 109.58769 * 174.42394 * 6 5 4 39 39 H 1.08997 * 109.58562 * 294.84997 * 6 5 4 40 40 H 1.09007 * 117.42426 * 355.36935 * 11 10 8 41 41 H 1.08996 * 117.43435 * 140.00908 * 11 10 8 42 42 H 1.09001 * 110.37284 * 217.18467 * 14 12 10 43 43 H 1.08996 * 110.46778 * 94.90262 * 14 12 10 44 44 H 1.08996 * 110.37534 * 200.65571 * 16 15 14 45 45 H 1.09012 * 110.37249 * 78.31991 * 16 15 14 46 46 H 1.09002 * 109.47092 * 300.92714 * 19 17 7 47 47 H 1.08999 * 109.47062 * 60.92453 * 19 17 7 48 48 H 1.09003 * 109.46818 * 301.80115 * 20 19 17 49 49 H 1.09001 * 109.46867 * 61.79062 * 20 19 17 50 50 H 1.09002 * 109.46789 * 299.99892 * 21 20 19 51 51 H 1.08993 * 109.47032 * 59.99732 * 21 20 19 52 52 H 0.97007 * 120.00001 * 359.97438 * 22 21 20 53 53 H 0.96995 * 119.99169 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 1.5030 -2.1557 -1.2660 6 6 2.0140 -2.9040 -0.0309 7 7 1.6515 -2.1382 1.1695 8 6 0.9747 -2.7222 2.1782 9 8 0.6032 -2.0589 3.1232 10 6 0.6797 -4.1992 2.1319 11 6 -0.6242 -4.6951 1.5035 12 6 -0.3888 -4.8579 3.0329 13 1 -0.9763 -4.2884 3.7531 14 6 0.2874 -6.1546 3.5305 15 8 1.2923 -6.4516 2.5367 16 6 1.8750 -5.1760 2.1918 17 6 2.0413 -0.7239 1.2496 18 1 3.1274 -0.6464 1.2979 19 6 1.4257 -0.0890 2.4981 20 6 1.8158 1.3889 2.5640 21 6 1.2375 2.0130 3.8356 22 7 1.6106 3.4282 3.8983 23 6 1.2022 4.1977 4.9548 24 1 0.6048 3.7614 5.7416 25 6 1.5553 5.5390 5.0140 26 7 2.2830 6.0708 4.0548 27 14 0.9989 6.5885 6.4557 28 1 0.1990 5.7590 7.3922 29 1 2.1879 7.1279 7.1632 30 1 0.1670 7.7131 5.9572 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5150 0.8893 33 1 -0.3634 0.5126 -0.8906 34 1 3.1305 -0.7443 -1.2353 35 1 1.6985 -0.1957 -2.1388 36 1 1.8480 -2.6627 -2.1672 37 1 0.4132 -2.1355 -1.2542 38 1 1.5553 -3.8919 0.0136 39 1 3.0979 -3.0043 -0.0869 40 1 -1.3407 -3.9426 1.1740 41 1 -0.5762 -5.5964 0.8924 42 1 -0.4404 -6.9641 3.5881 43 1 0.7518 -5.9932 4.5033 44 1 2.3669 -5.2336 1.2208 45 1 2.5832 -4.8624 2.9589 46 1 0.3401 -0.1765 2.4526 47 1 1.7946 -0.6021 3.3862 48 1 2.9021 1.4777 2.5772 49 1 1.4196 1.9085 1.6915 50 1 0.1512 1.9242 3.8222 51 1 1.6337 1.4934 4.7079 52 1 2.1469 3.8202 3.1914 53 1 2.5293 7.0081 4.0960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565984047.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:25 Heat of formation + Delta-G solvation = -47.953196 kcal Electronic energy + Delta-G solvation = -30888.428370 eV Core-core repulsion = 26953.842756 eV Total energy + Delta-G solvation = -3934.585614 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.28364 -40.85628 -38.68595 -37.32527 -35.69076 -35.01726 -34.35018 -33.12855 -31.04033 -30.04281 -28.39353 -27.28554 -26.87313 -26.03452 -24.71932 -23.91063 -22.79090 -22.05229 -21.66453 -20.48401 -19.29999 -19.17439 -18.20549 -17.33343 -16.97048 -16.82752 -16.56107 -16.45064 -16.16061 -15.87351 -15.49573 -15.37438 -15.21521 -15.08688 -14.85779 -14.53035 -14.21816 -13.84715 -13.73067 -13.64489 -13.47433 -13.24579 -13.07157 -12.92409 -12.80798 -12.69904 -12.51718 -12.43460 -12.21830 -12.10520 -11.99102 -11.88552 -11.73509 -11.64125 -11.47319 -11.27390 -11.21273 -11.14325 -10.97587 -10.64690 -10.05846 -9.51675 -9.06297 -7.99956 -5.29790 1.43445 1.45260 1.49785 1.55902 1.84781 2.32392 2.52392 2.81000 3.32781 3.33195 3.44367 3.54111 3.74874 3.77259 3.84529 3.89922 3.96693 4.09644 4.11914 4.17235 4.22988 4.26575 4.40307 4.47167 4.54954 4.58421 4.61315 4.64567 4.66213 4.68767 4.70703 4.75009 4.79121 4.80445 4.87917 4.89578 4.96563 5.03156 5.06363 5.07486 5.14298 5.24248 5.25098 5.30955 5.42380 5.44032 5.48298 5.53583 5.61162 5.74230 6.22855 6.43750 7.18611 7.28370 8.02560 8.29249 9.23976 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.002656 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.984338 B =10539.966428 C =11879.689132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.075 0.925 4 C -0.112 4.112 5 C -0.131 4.131 6 C 0.101 3.899 7 N -0.594 5.594 8 C 0.551 3.449 9 O -0.565 6.565 10 C -0.215 4.215 11 C -0.090 4.090 12 C -0.176 4.176 13 H 0.119 0.881 14 C 0.072 3.928 15 O -0.378 6.378 16 C 0.091 3.909 17 C 0.156 3.844 18 H 0.078 0.922 19 C -0.084 4.084 20 C -0.116 4.116 21 C 0.158 3.842 22 N -0.746 5.746 23 C -0.252 4.252 24 H 0.070 0.930 25 C -0.075 4.075 26 N -0.969 5.969 27 Si 0.978 3.022 28 H -0.269 1.269 29 H -0.288 1.288 30 H -0.288 1.288 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.071 0.929 44 H 0.123 0.877 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.063 0.937 50 H 0.008 0.992 51 H 0.007 0.993 52 H 0.375 0.625 53 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.826 -29.598 -14.806 33.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.093 0.907 4 C -0.150 4.150 5 C -0.169 4.169 6 C -0.021 4.021 7 N -0.326 5.326 8 C 0.339 3.661 9 O -0.444 6.444 10 C -0.218 4.218 11 C -0.127 4.127 12 C -0.194 4.194 13 H 0.137 0.863 14 C -0.004 4.004 15 O -0.296 6.296 16 C 0.014 3.986 17 C 0.053 3.947 18 H 0.096 0.904 19 C -0.122 4.122 20 C -0.155 4.155 21 C 0.031 3.969 22 N -0.389 5.389 23 C -0.384 4.384 24 H 0.088 0.912 25 C -0.267 4.267 26 N -0.619 5.619 27 Si 0.806 3.194 28 H -0.193 1.193 29 H -0.215 1.215 30 H -0.215 1.215 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.125 0.875 41 H 0.145 0.855 42 H 0.137 0.863 43 H 0.089 0.911 44 H 0.140 0.860 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.026 0.974 51 H 0.025 0.975 52 H 0.207 0.793 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.026 -29.459 -14.231 32.779 hybrid contribution -0.101 1.688 1.050 1.990 sum -2.127 -27.771 -13.182 30.814 Atomic orbital electron populations 1.21812 0.95377 1.01510 1.01075 1.21540 0.96279 0.99685 0.94801 0.90663 1.21554 1.01019 0.95919 0.96466 1.21946 1.01423 0.95489 0.98054 1.22109 1.01538 0.95553 0.82879 1.48084 1.55241 1.10709 1.18518 1.19568 0.77123 0.87702 0.81700 1.90822 1.52995 1.64398 1.36166 1.23115 0.94453 0.92238 1.12000 1.23380 0.93126 1.02945 0.93237 1.24648 1.01365 0.98556 0.94881 0.86325 1.23067 0.89919 0.95860 0.91586 1.89154 1.53655 1.27449 1.59380 1.22903 0.92189 0.80950 1.02590 1.21272 0.98538 0.79772 0.95121 0.90428 1.21799 1.01047 0.92231 0.97099 1.21759 1.00285 0.96547 0.96862 1.20670 0.95989 0.83934 0.96283 1.42597 1.63782 1.06393 1.26102 1.19674 1.26219 0.92121 1.00362 0.91236 1.25631 1.01351 0.98211 1.01518 1.69826 1.43626 1.12964 1.35492 0.85015 0.77348 0.78440 0.78601 1.19344 1.21495 1.21485 0.92414 0.94671 0.92019 0.90908 0.90855 0.88134 0.91623 0.87883 0.89660 0.87479 0.85538 0.86256 0.91077 0.85958 0.91988 0.91915 0.92335 0.92368 0.91823 0.97413 0.97465 0.79304 0.93760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.20 71.98 0.59 -2.54 16 2 C -0.10 -2.12 2.28 -10.71 -0.02 -2.15 16 3 H 0.08 1.75 6.79 -2.39 -0.02 1.73 16 4 C -0.11 -1.51 5.43 30.62 0.17 -1.34 16 5 C -0.13 -1.28 5.74 30.67 0.18 -1.10 16 6 C 0.10 1.08 5.79 86.36 0.50 1.58 16 7 N -0.59 -11.33 2.41 -795.03 -1.92 -13.25 16 8 C 0.55 12.87 7.23 87.66 0.63 13.51 16 9 O -0.56 -18.54 12.32 -3.04 -0.04 -18.57 16 10 C -0.21 -3.56 1.25 -51.91 -0.06 -3.62 16 11 C -0.09 -1.14 9.68 31.49 0.30 -0.83 16 12 C -0.18 -2.84 7.09 -8.89 -0.06 -2.91 16 13 H 0.12 2.28 8.14 -2.38 -0.02 2.26 16 14 C 0.07 0.98 7.54 72.48 0.55 1.53 16 15 O -0.38 -5.95 11.32 -148.98 -1.69 -7.64 16 16 C 0.09 1.27 6.82 72.49 0.49 1.76 16 17 C 0.16 3.63 2.72 44.98 0.12 3.75 16 18 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 19 C -0.08 -2.67 2.64 30.59 0.08 -2.59 16 20 C -0.12 -4.26 4.92 30.59 0.15 -4.11 16 21 C 0.16 7.40 6.26 86.38 0.54 7.94 16 22 N -0.75 -41.97 5.60 -343.46 -1.92 -43.90 16 23 C -0.25 -15.30 9.99 84.04 0.84 -14.46 16 24 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16 25 C -0.07 -4.54 5.50 84.86 0.47 -4.07 16 26 N -0.97 -61.58 13.06 21.66 0.28 -61.30 16 27 Si 0.98 48.27 29.55 68.60 2.03 50.30 16 28 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 29 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 30 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 31 H 0.06 1.20 5.97 -2.38 -0.01 1.19 16 32 H 0.03 0.98 6.37 -2.39 -0.02 0.97 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.07 0.75 6.33 -2.39 -0.02 0.74 16 38 H 0.10 0.80 5.15 -2.38 -0.01 0.79 16 39 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.13 1.14 8.07 -2.39 -0.02 1.12 16 42 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.12 1.10 6.78 -2.39 -0.02 1.08 16 45 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.06 2.22 5.23 -2.39 -0.01 2.20 16 47 H 0.06 2.13 6.52 -2.39 -0.02 2.12 16 48 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.06 2.29 6.66 -2.39 -0.02 2.27 16 50 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 51 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 52 H 0.37 21.83 7.67 -92.70 -0.71 21.12 16 53 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -75.49 396.33 2.40 -73.09 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.19 Total: 30.92 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 5.46 Total: -9.66 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -3.56 Total: -118.45 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -1.72 Total: -26.21 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Total: -75.49 2.40 -73.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565984047.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.142 kcal (2) G-P(sol) polarization free energy of solvation -75.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds