Wall clock time and date at job start Tue Mar 31 2020 19:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50693 * 119.99613 * 2 1 4 4 C 1.53006 * 109.46774 * 239.99329 * 3 2 1 5 5 O 1.42898 * 109.47638 * 359.97438 * 3 2 1 6 6 C 1.53002 * 109.47164 * 119.99820 * 3 2 1 7 7 C 1.50704 * 109.47104 * 179.97438 * 6 3 2 8 8 O 1.21284 * 120.00173 * 0.02562 * 7 6 3 9 9 N 1.34773 * 120.00161 * 179.97438 * 7 6 3 10 10 C 1.47581 * 125.62669 * 0.02562 * 9 7 6 11 11 C 1.54120 * 104.78078 * 203.29953 * 10 9 7 12 12 C 1.54385 * 102.47844 * 323.92000 * 11 10 9 13 13 C 1.47084 * 125.63095 * 179.97438 * 9 7 6 14 14 H 1.09008 * 109.87481 * 59.60835 * 13 9 7 15 15 C 1.52994 * 110.00467 * 298.53192 * 13 9 7 16 16 C 1.52114 * 110.69761 * 206.07116 * 11 10 9 17 17 C 1.53339 * 109.44386 * 176.91769 * 16 11 10 18 18 N 1.46931 * 108.68543 * 53.29940 * 17 16 11 19 19 C 1.36940 * 120.54807 * 125.63278 * 18 17 16 20 20 H 1.08004 * 120.00017 * 331.82734 * 19 18 17 21 21 C 1.38813 * 119.99810 * 151.82016 * 19 18 17 22 22 N 1.31616 * 119.99949 * 335.54864 * 21 19 18 23 23 Si 1.86802 * 119.99755 * 155.54079 * 21 19 18 24 24 H 1.48505 * 109.47054 * 179.97438 * 23 21 19 25 25 H 1.48492 * 109.47372 * 300.00576 * 23 21 19 26 26 H 1.48509 * 109.46823 * 60.00803 * 23 21 19 27 27 C 1.46930 * 118.90329 * 305.91144 * 18 17 16 28 28 C 1.52108 * 110.69596 * 81.78203 * 11 10 9 29 29 H 1.07999 * 119.99897 * 179.97438 * 1 2 3 30 30 H 1.08003 * 119.99811 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99757 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47469 * 299.99966 * 4 3 2 33 33 H 1.08997 * 109.47080 * 60.00137 * 4 3 2 34 34 H 1.09002 * 109.47405 * 180.02562 * 4 3 2 35 35 H 0.96703 * 113.99633 * 60.01082 * 5 3 2 36 36 H 1.08993 * 109.47178 * 59.99724 * 6 3 2 37 37 H 1.08996 * 109.46743 * 299.99244 * 6 3 2 38 38 H 1.08993 * 110.37423 * 84.47079 * 10 9 7 39 39 H 1.09004 * 110.37498 * 322.12417 * 10 9 7 40 40 H 1.09010 * 110.73273 * 152.99032 * 12 11 10 41 41 H 1.09004 * 110.73744 * 276.11957 * 12 11 10 42 42 H 1.09002 * 109.46417 * 302.08832 * 15 13 9 43 43 H 1.08996 * 109.47173 * 62.08524 * 15 13 9 44 44 H 1.09000 * 109.47293 * 182.09108 * 15 13 9 45 45 H 1.09008 * 109.47251 * 56.92910 * 16 11 10 46 46 H 1.08999 * 109.48209 * 296.91561 * 16 11 10 47 47 H 1.08995 * 109.60229 * 293.54288 * 17 16 11 48 48 H 1.08994 * 109.73469 * 173.14067 * 17 16 11 49 49 H 0.96993 * 120.00586 * 354.24394 * 22 21 19 50 50 H 1.08995 * 109.59904 * 173.84448 * 27 18 17 51 51 H 1.08998 * 109.59868 * 294.32792 * 27 18 17 52 52 H 1.08998 * 109.47471 * 303.06981 * 28 11 10 53 53 H 1.09000 * 109.47439 * 63.08418 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9432 1.3860 -1.2492 5 8 1.1349 2.3913 -0.0006 6 6 2.9430 1.3862 1.2493 7 6 3.6969 2.6911 1.2489 8 8 3.5453 3.4789 0.3393 9 7 4.5389 2.9832 2.2599 10 6 4.8162 2.1200 3.4244 11 6 5.3156 3.0840 4.5184 12 6 6.1254 4.1183 3.7073 13 6 5.3340 4.2144 2.3843 14 1 4.6734 5.0811 2.4100 15 6 6.3024 4.3334 1.2059 16 6 6.2165 2.3570 5.5051 17 6 6.7578 3.3565 6.5343 18 7 5.6251 4.0769 7.1316 19 6 5.4589 4.1083 8.4906 20 1 5.8277 3.2954 9.0986 21 6 4.8166 5.1849 9.0865 22 7 4.7942 6.3543 8.4828 23 14 3.9837 4.9740 10.7453 24 1 3.3759 6.2635 11.1615 25 1 2.9250 3.9383 10.6395 26 1 4.9891 4.5530 11.7539 27 6 4.6702 4.7579 6.2466 28 6 4.1441 3.7549 5.2192 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 3.6516 0.5576 -1.2491 33 1 2.3166 1.3282 -2.1392 34 1 3.4885 2.3298 -1.2491 35 1 0.5434 2.4034 0.7643 36 1 3.6513 0.5578 1.2493 37 1 2.3163 1.3286 2.1392 38 1 5.5880 1.3901 3.1805 39 1 3.9055 1.6166 3.7490 40 1 6.1425 5.0813 4.2179 41 1 7.1392 3.7601 3.5281 42 1 6.9476 3.4553 1.1759 43 1 5.7371 4.4008 0.2764 44 1 6.9125 5.2286 1.3259 45 1 7.0488 1.9006 4.9691 46 1 5.6452 1.5823 6.0165 47 1 7.4227 4.0654 6.0409 48 1 7.3040 2.8239 7.3127 49 1 5.2961 6.4868 7.6634 50 1 3.8391 5.1462 6.8351 51 1 5.1704 5.5774 5.7305 52 1 3.5299 4.2745 4.4838 53 1 3.5434 3.0001 5.7265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656393235.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:29 Heat of formation + Delta-G solvation = -46.151381 kcal Electronic energy + Delta-G solvation = -31302.051963 eV Core-core repulsion = 27367.544482 eV Total energy + Delta-G solvation = -3934.507481 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.77544 -39.39796 -37.76755 -36.11187 -33.34842 -33.24173 -32.25684 -31.07584 -30.84276 -30.08850 -28.10299 -26.95759 -26.05255 -23.98128 -23.35806 -22.51604 -21.48198 -20.97771 -19.87750 -18.95578 -18.21525 -17.37682 -17.23237 -16.72110 -16.07368 -15.63613 -15.34918 -14.80113 -14.42271 -14.31946 -14.09123 -13.88283 -13.59412 -13.43661 -13.38361 -13.12860 -12.83890 -12.67048 -12.48555 -12.43973 -12.38627 -12.27595 -11.83513 -11.76706 -11.71477 -11.57127 -11.30264 -11.03516 -10.92701 -10.78224 -10.68616 -10.44916 -10.40345 -10.20968 -10.06841 -9.90043 -9.77154 -9.74274 -9.47692 -9.25350 -8.54638 -8.39076 -6.89319 -6.08323 -3.25847 1.88881 2.68311 2.98366 3.47655 3.50607 3.68921 4.03157 4.31566 4.50131 4.57391 4.59424 4.65575 4.73585 4.91786 4.98771 5.00471 5.16817 5.20491 5.24851 5.34532 5.39535 5.41895 5.49967 5.52002 5.55753 5.59763 5.68033 5.69821 5.74951 5.85611 5.91093 5.94758 6.05525 6.12087 6.15141 6.16525 6.24097 6.26845 6.31859 6.40841 6.44247 6.49704 6.51849 6.58026 6.70643 6.78156 7.03499 7.18071 7.50838 7.60336 7.98579 8.25943 8.55998 9.10078 9.82625 10.27311 11.19846 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.002941 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.554164 B = 9517.264918 C =10339.305913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.188 4.188 3 C 0.178 3.822 4 C -0.146 4.146 5 O -0.538 6.538 6 C -0.162 4.162 7 C 0.529 3.471 8 O -0.521 6.521 9 N -0.612 5.612 10 C 0.106 3.894 11 C -0.055 4.055 12 C -0.119 4.119 13 C 0.137 3.863 14 H 0.073 0.927 15 C -0.159 4.159 16 C -0.118 4.118 17 C 0.149 3.851 18 N -0.598 5.598 19 C -0.350 4.350 20 H 0.055 0.945 21 C -0.024 4.024 22 N -0.915 5.915 23 Si 1.063 2.937 24 H -0.285 1.285 25 H -0.294 1.294 26 H -0.293 1.293 27 C 0.153 3.847 28 C -0.119 4.119 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.369 0.631 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.017 0.983 48 H 0.055 0.945 49 H 0.269 0.731 50 H 0.078 0.922 51 H 0.018 0.982 52 H 0.051 0.949 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.170 -12.828 -15.908 20.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.206 4.206 3 C 0.136 3.864 4 C -0.203 4.203 5 O -0.343 6.343 6 C -0.202 4.202 7 C 0.318 3.682 8 O -0.398 6.398 9 N -0.347 5.347 10 C -0.017 4.017 11 C -0.056 4.056 12 C -0.157 4.157 13 C 0.034 3.966 14 H 0.091 0.909 15 C -0.217 4.217 16 C -0.157 4.157 17 C 0.023 3.977 18 N -0.322 5.322 19 C -0.479 4.479 20 H 0.073 0.927 21 C -0.226 4.226 22 N -0.556 5.556 23 Si 0.893 3.107 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.220 1.220 27 C 0.027 3.973 28 C -0.159 4.159 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.216 0.784 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.035 0.965 48 H 0.073 0.927 49 H 0.080 0.920 50 H 0.097 0.903 51 H 0.036 0.964 52 H 0.070 0.930 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.924 -11.497 -15.852 19.799 hybrid contribution 0.709 -1.284 -0.437 1.530 sum -2.215 -12.781 -16.289 20.823 Atomic orbital electron populations 1.23881 0.96038 1.02431 0.99359 1.23616 0.96777 0.98777 1.01420 1.19842 0.88002 0.84055 0.94490 1.21931 0.98830 1.04257 0.95292 1.86719 1.50047 1.48892 1.48650 1.22380 1.00343 0.96934 1.00563 1.20005 0.78839 0.88319 0.81082 1.90660 1.64166 1.50078 1.34874 1.48689 1.43129 1.20338 1.22500 1.22442 1.00344 0.93463 0.85417 1.20969 0.96518 0.94593 0.93538 1.22793 0.98179 1.01224 0.93485 1.21573 0.92300 0.87322 0.95374 0.90871 1.22109 0.98997 1.01609 0.98982 1.21839 0.97844 0.98900 0.97135 1.20885 0.90012 0.92861 0.93935 1.44087 1.23857 1.61633 1.02581 1.19962 1.41350 1.04229 0.82370 0.92748 1.25828 1.01014 0.91409 1.04323 1.70783 1.42813 1.21432 1.20525 0.83549 0.76468 0.75478 0.75205 1.21100 1.22095 1.22015 1.20883 0.93761 0.91969 0.90712 1.21810 0.95783 1.00023 0.98248 0.88214 0.87675 0.86686 0.92028 0.92272 0.88726 0.78390 0.88303 0.88774 0.91675 0.90968 0.89357 0.90869 0.92872 0.91494 0.91822 0.92786 0.92016 0.96492 0.92689 0.92030 0.90320 0.96441 0.93045 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 13.93 29.01 0.40 -0.97 16 2 C -0.19 -1.54 8.77 -36.03 -0.32 -1.86 16 3 C 0.18 1.81 0.94 -91.77 -0.09 1.72 16 4 C -0.15 -1.58 8.50 37.16 0.32 -1.27 16 5 O -0.54 -6.43 10.85 -53.48 -0.58 -7.01 16 6 C -0.16 -1.60 3.95 -27.88 -0.11 -1.71 16 7 C 0.53 7.02 7.20 -10.99 -0.08 6.94 16 8 O -0.52 -8.50 12.01 -12.70 -0.15 -8.65 16 9 N -0.61 -7.95 3.06 -163.26 -0.50 -8.45 16 10 C 0.11 1.27 5.59 -2.86 -0.02 1.26 16 11 C -0.06 -0.80 0.55 -154.10 -0.08 -0.89 16 12 C -0.12 -1.67 4.45 -25.24 -0.11 -1.78 16 13 C 0.14 1.88 3.08 -66.85 -0.21 1.67 16 14 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 15 C -0.16 -1.98 9.10 37.15 0.34 -1.64 16 16 C -0.12 -1.80 4.84 -27.01 -0.13 -1.93 16 17 C 0.15 2.90 6.25 -3.63 -0.02 2.88 16 18 N -0.60 -14.14 2.84 -172.40 -0.49 -14.63 16 19 C -0.35 -9.44 9.48 -15.06 -0.14 -9.58 16 20 H 0.05 1.48 7.94 -52.48 -0.42 1.06 16 21 C -0.02 -0.65 4.69 -17.43 -0.08 -0.74 16 22 N -0.92 -26.87 12.41 55.49 0.69 -26.18 16 23 Si 1.06 24.74 29.98 -169.99 -5.10 19.64 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.15 3.37 4.36 -3.85 -0.02 3.35 16 28 C -0.12 -2.09 4.84 -27.23 -0.13 -2.22 16 29 H 0.10 0.63 8.06 -52.49 -0.42 0.20 16 30 H 0.11 0.81 6.41 -52.48 -0.34 0.47 16 31 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.27 5.51 -51.93 -0.29 0.99 16 35 H 0.37 3.28 8.05 45.56 0.37 3.65 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.84 7.86 -51.93 -0.41 0.43 16 38 H 0.07 0.69 7.99 -51.93 -0.41 0.28 16 39 H 0.07 0.81 7.39 -51.93 -0.38 0.42 16 40 H 0.09 1.41 6.18 -51.92 -0.32 1.08 16 41 H 0.07 0.95 7.69 -51.93 -0.40 0.55 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.93 6.90 -51.93 -0.36 0.57 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.70 8.09 -51.92 -0.42 0.28 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.02 0.33 7.62 -51.93 -0.40 -0.06 16 48 H 0.05 1.09 7.93 -51.93 -0.41 0.67 16 49 H 0.27 7.92 6.71 -40.82 -0.27 7.65 16 50 H 0.08 2.01 6.29 -51.93 -0.33 1.68 16 51 H 0.02 0.40 6.30 -51.93 -0.33 0.07 16 52 H 0.05 0.88 7.82 -51.93 -0.41 0.47 16 53 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 396.91 15.07 5.98 5.98 Total: -1.00 -31.67 396.91 -9.17 -40.84 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -8.54 Total: 5.21 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -0.48 Total: -6.76 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.30 Total: -49.25 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.73 Total: -15.66 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.10 Total: 19.64 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.67 -9.17 -40.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656393235.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.311 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds