Wall clock time and date at job start Tue Mar 31 2020 19:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50693 * 119.99613 * 2 1 4 4 C 1.53006 * 109.46774 * 239.99329 * 3 2 1 5 5 O 1.42898 * 109.47638 * 359.97438 * 3 2 1 6 6 C 1.53002 * 109.47164 * 119.99820 * 3 2 1 7 7 C 1.50704 * 109.47104 * 179.97438 * 6 3 2 8 8 O 1.21284 * 120.00173 * 0.02562 * 7 6 3 9 9 N 1.34773 * 120.00161 * 179.97438 * 7 6 3 10 10 C 1.47581 * 125.62669 * 0.02562 * 9 7 6 11 11 C 1.54120 * 104.78078 * 203.29953 * 10 9 7 12 12 C 1.54385 * 102.47844 * 323.92000 * 11 10 9 13 13 C 1.47084 * 125.63095 * 179.97438 * 9 7 6 14 14 H 1.09008 * 109.87481 * 59.60835 * 13 9 7 15 15 C 1.52994 * 110.00467 * 298.53192 * 13 9 7 16 16 C 1.52114 * 110.69761 * 206.07116 * 11 10 9 17 17 C 1.53339 * 109.44386 * 176.91769 * 16 11 10 18 18 N 1.46931 * 108.68543 * 53.29940 * 17 16 11 19 19 C 1.36940 * 120.54807 * 125.63278 * 18 17 16 20 20 H 1.08004 * 120.00017 * 331.82734 * 19 18 17 21 21 C 1.38813 * 119.99810 * 151.82016 * 19 18 17 22 22 N 1.31616 * 119.99949 * 335.54864 * 21 19 18 23 23 Si 1.86802 * 119.99755 * 155.54079 * 21 19 18 24 24 H 1.48505 * 109.47054 * 179.97438 * 23 21 19 25 25 H 1.48492 * 109.47372 * 300.00576 * 23 21 19 26 26 H 1.48509 * 109.46823 * 60.00803 * 23 21 19 27 27 C 1.46930 * 118.90329 * 305.91144 * 18 17 16 28 28 C 1.52108 * 110.69596 * 81.78203 * 11 10 9 29 29 H 1.07999 * 119.99897 * 179.97438 * 1 2 3 30 30 H 1.08003 * 119.99811 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99757 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47469 * 299.99966 * 4 3 2 33 33 H 1.08997 * 109.47080 * 60.00137 * 4 3 2 34 34 H 1.09002 * 109.47405 * 180.02562 * 4 3 2 35 35 H 0.96703 * 113.99633 * 60.01082 * 5 3 2 36 36 H 1.08993 * 109.47178 * 59.99724 * 6 3 2 37 37 H 1.08996 * 109.46743 * 299.99244 * 6 3 2 38 38 H 1.08993 * 110.37423 * 84.47079 * 10 9 7 39 39 H 1.09004 * 110.37498 * 322.12417 * 10 9 7 40 40 H 1.09010 * 110.73273 * 152.99032 * 12 11 10 41 41 H 1.09004 * 110.73744 * 276.11957 * 12 11 10 42 42 H 1.09002 * 109.46417 * 302.08832 * 15 13 9 43 43 H 1.08996 * 109.47173 * 62.08524 * 15 13 9 44 44 H 1.09000 * 109.47293 * 182.09108 * 15 13 9 45 45 H 1.09008 * 109.47251 * 56.92910 * 16 11 10 46 46 H 1.08999 * 109.48209 * 296.91561 * 16 11 10 47 47 H 1.08995 * 109.60229 * 293.54288 * 17 16 11 48 48 H 1.08994 * 109.73469 * 173.14067 * 17 16 11 49 49 H 0.96993 * 120.00586 * 354.24394 * 22 21 19 50 50 H 1.08995 * 109.59904 * 173.84448 * 27 18 17 51 51 H 1.08998 * 109.59868 * 294.32792 * 27 18 17 52 52 H 1.08998 * 109.47471 * 303.06981 * 28 11 10 53 53 H 1.09000 * 109.47439 * 63.08418 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9432 1.3860 -1.2492 5 8 1.1349 2.3913 -0.0006 6 6 2.9430 1.3862 1.2493 7 6 3.6969 2.6911 1.2489 8 8 3.5453 3.4789 0.3393 9 7 4.5389 2.9832 2.2599 10 6 4.8162 2.1200 3.4244 11 6 5.3156 3.0840 4.5184 12 6 6.1254 4.1183 3.7073 13 6 5.3340 4.2144 2.3843 14 1 4.6734 5.0811 2.4100 15 6 6.3024 4.3334 1.2059 16 6 6.2165 2.3570 5.5051 17 6 6.7578 3.3565 6.5343 18 7 5.6251 4.0769 7.1316 19 6 5.4589 4.1083 8.4906 20 1 5.8277 3.2954 9.0986 21 6 4.8166 5.1849 9.0865 22 7 4.7942 6.3543 8.4828 23 14 3.9837 4.9740 10.7453 24 1 3.3759 6.2635 11.1615 25 1 2.9250 3.9383 10.6395 26 1 4.9891 4.5530 11.7539 27 6 4.6702 4.7579 6.2466 28 6 4.1441 3.7549 5.2192 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 3.6516 0.5576 -1.2491 33 1 2.3166 1.3282 -2.1392 34 1 3.4885 2.3298 -1.2491 35 1 0.5434 2.4034 0.7643 36 1 3.6513 0.5578 1.2493 37 1 2.3163 1.3286 2.1392 38 1 5.5880 1.3901 3.1805 39 1 3.9055 1.6166 3.7490 40 1 6.1425 5.0813 4.2179 41 1 7.1392 3.7601 3.5281 42 1 6.9476 3.4553 1.1759 43 1 5.7371 4.4008 0.2764 44 1 6.9125 5.2286 1.3259 45 1 7.0488 1.9006 4.9691 46 1 5.6452 1.5823 6.0165 47 1 7.4227 4.0654 6.0409 48 1 7.3040 2.8239 7.3127 49 1 5.2961 6.4868 7.6634 50 1 3.8391 5.1462 6.8351 51 1 5.1704 5.5774 5.7305 52 1 3.5299 4.2745 4.4838 53 1 3.5434 3.0001 5.7265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656393235.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:28 Heat of formation + Delta-G solvation = -65.084390 kcal Electronic energy + Delta-G solvation = -31302.872960 eV Core-core repulsion = 27367.544482 eV Total energy + Delta-G solvation = -3935.328478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.86379 -40.43800 -38.82120 -37.54568 -34.96770 -34.01711 -33.19274 -32.50910 -31.84383 -31.71708 -29.05347 -28.33713 -27.17881 -25.70289 -24.32129 -23.88981 -22.66428 -22.39698 -20.58129 -20.05583 -19.75000 -18.92104 -18.17218 -17.75141 -17.01109 -16.52145 -16.38149 -16.07245 -15.99296 -15.55044 -15.44280 -15.28927 -15.06000 -14.91746 -14.43702 -14.25155 -14.00146 -13.86430 -13.65301 -13.39114 -13.30704 -13.21376 -13.14293 -12.90173 -12.71207 -12.56550 -12.47899 -12.41680 -12.21094 -12.11628 -11.99592 -11.94254 -11.89660 -11.67236 -11.42195 -11.22451 -11.14779 -11.02989 -10.49491 -10.43311 -10.31807 -9.59043 -8.87821 -8.21039 -5.37500 1.30673 1.58612 1.65699 1.71026 1.84251 2.01400 2.67368 3.22994 3.27728 3.43964 3.45822 3.59206 3.72123 3.77400 3.78595 4.03069 4.09061 4.13736 4.19608 4.24198 4.39474 4.40366 4.41679 4.49825 4.55952 4.59764 4.68167 4.70834 4.72430 4.78455 4.82267 4.86536 4.87907 4.93520 4.96094 5.05172 5.12453 5.14110 5.20873 5.23399 5.24667 5.28901 5.34833 5.37194 5.47376 5.57244 5.65902 5.81609 5.87540 6.41879 6.61377 6.82187 7.10448 7.27249 7.81778 8.26637 9.03045 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.002941 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.554164 B = 9517.264918 C =10339.305913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.189 4.189 3 C 0.173 3.827 4 C -0.146 4.146 5 O -0.564 6.564 6 C -0.154 4.154 7 C 0.523 3.477 8 O -0.558 6.558 9 N -0.613 5.613 10 C 0.115 3.885 11 C -0.055 4.055 12 C -0.111 4.111 13 C 0.138 3.862 14 H 0.045 0.955 15 C -0.149 4.149 16 C -0.103 4.103 17 C 0.143 3.857 18 N -0.616 5.616 19 C -0.351 4.351 20 H 0.052 0.948 21 C -0.078 4.078 22 N -0.946 5.946 23 Si 1.112 2.888 24 H -0.296 1.296 25 H -0.279 1.279 26 H -0.276 1.276 27 C 0.162 3.838 28 C -0.104 4.104 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.135 0.865 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.379 0.621 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.048 0.952 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.062 0.938 47 H 0.017 0.983 48 H 0.049 0.951 49 H 0.253 0.747 50 H 0.035 0.965 51 H 0.003 0.997 52 H 0.051 0.949 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.818 -16.505 -16.427 23.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.208 4.208 3 C 0.132 3.868 4 C -0.203 4.203 5 O -0.371 6.371 6 C -0.194 4.194 7 C 0.314 3.686 8 O -0.437 6.437 9 N -0.347 5.347 10 C -0.007 4.007 11 C -0.055 4.055 12 C -0.149 4.149 13 C 0.034 3.966 14 H 0.063 0.937 15 C -0.207 4.207 16 C -0.143 4.143 17 C 0.018 3.982 18 N -0.340 5.340 19 C -0.481 4.481 20 H 0.069 0.931 21 C -0.274 4.274 22 N -0.588 5.588 23 Si 0.937 3.063 24 H -0.222 1.222 25 H -0.205 1.205 26 H -0.201 1.201 27 C 0.036 3.964 28 C -0.143 4.143 29 H 0.134 0.866 30 H 0.117 0.883 31 H 0.153 0.847 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.227 0.773 36 H 0.145 0.855 37 H 0.126 0.874 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.111 0.889 46 H 0.081 0.919 47 H 0.035 0.965 48 H 0.067 0.933 49 H 0.063 0.937 50 H 0.054 0.946 51 H 0.021 0.979 52 H 0.070 0.930 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.554 -15.220 -16.379 22.505 hybrid contribution 0.637 -0.081 -0.306 0.711 sum -1.917 -15.301 -16.685 22.720 Atomic orbital electron populations 1.24032 0.96114 1.02957 0.98578 1.23586 0.96835 0.98279 1.02066 1.19941 0.87945 0.84635 0.94270 1.21910 0.99103 1.03551 0.95695 1.86691 1.50742 1.50127 1.49542 1.22408 1.00558 0.95520 1.00913 1.20673 0.78443 0.89175 0.80341 1.90664 1.65156 1.51566 1.36295 1.48751 1.43026 1.20060 1.22857 1.22449 1.02021 0.92703 0.83561 1.20890 0.95209 0.95295 0.94142 1.22689 0.99240 0.99831 0.93135 1.21453 0.92192 0.87140 0.95769 0.93662 1.22007 0.98626 1.02682 0.97377 1.21689 0.99016 0.97449 0.96098 1.21078 0.88935 0.93360 0.94852 1.44321 1.25651 1.62117 1.01948 1.20229 1.40260 1.03507 0.84122 0.93054 1.27124 1.02010 0.91061 1.07209 1.70900 1.44398 1.22763 1.20761 0.82897 0.76207 0.75218 0.72027 1.22192 1.20537 1.20135 1.20661 0.92070 0.92804 0.90840 1.21582 0.96996 0.98727 0.96995 0.86600 0.88317 0.84686 0.89740 0.92889 0.91680 0.77296 0.85530 0.87359 0.88545 0.89388 0.92118 0.88803 0.91361 0.93259 0.91102 0.88912 0.91892 0.96544 0.93266 0.93686 0.94624 0.97940 0.93021 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 13.93 67.77 0.94 -1.37 16 2 C -0.19 -2.54 8.77 25.64 0.22 -2.31 16 3 C 0.17 3.18 0.94 -11.54 -0.01 3.17 16 4 C -0.15 -2.96 8.50 71.98 0.61 -2.35 16 5 O -0.56 -13.14 10.85 -131.53 -1.43 -14.57 16 6 C -0.15 -2.55 3.95 29.85 0.12 -2.43 16 7 C 0.52 12.96 7.20 87.66 0.63 13.59 16 8 O -0.56 -18.17 12.01 14.41 0.17 -18.00 16 9 N -0.61 -14.49 3.06 -788.81 -2.42 -16.90 16 10 C 0.11 2.26 5.59 86.55 0.48 2.75 16 11 C -0.05 -1.45 0.55 -51.92 -0.03 -1.48 16 12 C -0.11 -2.95 4.45 31.56 0.14 -2.81 16 13 C 0.14 3.65 3.08 45.37 0.14 3.79 16 14 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 15 C -0.15 -3.52 9.10 71.98 0.66 -2.86 16 16 C -0.10 -2.81 4.84 30.42 0.15 -2.66 16 17 C 0.14 5.39 6.25 86.41 0.54 5.93 16 18 N -0.62 -29.49 2.84 -699.35 -1.98 -31.48 16 19 C -0.35 -19.19 9.48 84.03 0.80 -18.40 16 20 H 0.05 2.79 7.94 -2.91 -0.02 2.77 16 21 C -0.08 -4.40 4.69 84.86 0.40 -4.00 16 22 N -0.95 -57.75 12.41 21.65 0.27 -57.48 16 23 Si 1.11 50.51 29.98 68.60 2.06 52.56 16 24 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 25 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 27 C 0.16 7.43 4.36 86.27 0.38 7.80 16 28 C -0.10 -3.60 4.84 30.27 0.15 -3.46 16 29 H 0.12 1.11 8.06 -2.91 -0.02 1.08 16 30 H 0.10 1.38 6.41 -2.91 -0.02 1.36 16 31 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.75 5.51 -2.39 -0.01 1.73 16 35 H 0.38 6.50 8.05 -74.05 -0.60 5.91 16 36 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.11 1.52 7.86 -2.39 -0.02 1.50 16 38 H 0.10 1.43 7.99 -2.39 -0.02 1.41 16 39 H 0.09 1.53 7.39 -2.39 -0.02 1.51 16 40 H 0.06 1.97 6.18 -2.38 -0.01 1.95 16 41 H 0.09 2.13 7.69 -2.38 -0.02 2.11 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.05 1.35 6.90 -2.39 -0.02 1.33 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.09 1.89 8.09 -2.38 -0.02 1.87 16 46 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.02 0.63 7.62 -2.39 -0.02 0.61 16 48 H 0.05 1.89 7.93 -2.39 -0.02 1.87 16 49 H 0.25 15.76 6.71 -92.71 -0.62 15.13 16 50 H 0.04 1.92 6.29 -2.39 -0.02 1.90 16 51 H 0.00 0.13 6.30 -2.39 -0.02 0.12 16 52 H 0.05 1.77 7.82 -2.39 -0.02 1.75 16 53 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -72.74 396.91 3.42 -69.32 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.43 Total: 23.64 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 6.31 Total: -7.10 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -4.13 Total: -105.86 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -1.25 Total: -32.57 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 2.06 Total: 52.56 kcal Total: -72.74 3.42 -69.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656393235.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.239 kcal (2) G-P(sol) polarization free energy of solvation -72.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds