Wall clock time and date at job start Tue Mar 31 2020 19:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00098 * 2 1 4 4 C 1.53005 * 109.46838 * 120.00362 * 3 2 1 5 5 O 1.42901 * 109.47176 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.47240 * 240.00176 * 3 2 1 7 7 C 1.50698 * 109.46773 * 60.37500 * 6 3 2 8 8 O 1.21275 * 120.00282 * 353.97091 * 7 6 3 9 9 N 1.34778 * 119.99975 * 173.97810 * 7 6 3 10 10 C 1.47578 * 125.62860 * 0.02562 * 9 7 6 11 11 C 1.54116 * 104.78351 * 156.65899 * 10 9 7 12 12 C 1.54395 * 102.47765 * 36.08243 * 11 10 9 13 13 C 1.47079 * 125.63049 * 180.02562 * 9 7 6 14 14 H 1.09001 * 109.87832 * 300.42804 * 13 9 7 15 15 C 1.52996 * 109.88260 * 61.57780 * 13 9 7 16 16 C 1.52106 * 110.69657 * 153.93774 * 11 10 9 17 17 C 1.53344 * 109.44710 * 183.05791 * 16 11 10 18 18 N 1.46934 * 108.69101 * 306.70455 * 17 16 11 19 19 C 1.36939 * 120.55435 * 234.38024 * 18 17 16 20 20 H 1.07998 * 120.00007 * 30.92365 * 19 18 17 21 21 C 1.38811 * 119.99385 * 210.92846 * 19 18 17 22 22 N 1.31615 * 120.00515 * 12.58104 * 21 19 18 23 23 Si 1.86803 * 119.99710 * 192.58427 * 21 19 18 24 24 H 1.48497 * 109.47475 * 59.99237 * 23 21 19 25 25 H 1.48498 * 109.47355 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.46926 * 299.99622 * 23 21 19 27 27 C 1.46932 * 118.88615 * 54.35196 * 18 17 16 28 28 C 1.52107 * 110.69210 * 278.22697 * 11 10 9 29 29 H 1.07996 * 120.00504 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99804 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.99804 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47403 * 184.69430 * 4 3 2 33 33 H 1.09003 * 109.47163 * 304.69822 * 4 3 2 34 34 H 1.09004 * 109.46971 * 64.69849 * 4 3 2 35 35 H 0.96700 * 113.99520 * 299.99766 * 5 3 2 36 36 H 1.08995 * 109.47346 * 300.36901 * 6 3 2 37 37 H 1.09001 * 109.46735 * 180.36911 * 6 3 2 38 38 H 1.08996 * 110.37372 * 37.83241 * 10 9 7 39 39 H 1.09004 * 110.37162 * 275.49009 * 10 9 7 40 40 H 1.08995 * 110.73147 * 207.00691 * 12 11 10 41 41 H 1.08997 * 110.73531 * 83.69572 * 12 11 10 42 42 H 1.09003 * 109.47257 * 177.83632 * 15 13 9 43 43 H 1.08998 * 109.46776 * 297.83932 * 15 13 9 44 44 H 1.09007 * 109.46798 * 57.83674 * 15 13 9 45 45 H 1.09004 * 109.47927 * 303.04772 * 16 11 10 46 46 H 1.08999 * 109.47638 * 63.06397 * 16 11 10 47 47 H 1.09007 * 109.60216 * 186.94364 * 17 16 11 48 48 H 1.08997 * 109.73446 * 66.54414 * 17 16 11 49 49 H 0.97005 * 120.00036 * 180.02562 * 22 21 19 50 50 H 1.09008 * 109.59659 * 185.88592 * 27 18 17 51 51 H 1.08998 * 109.73773 * 65.48657 * 27 18 17 52 52 H 1.08996 * 109.47190 * 296.92906 * 28 11 10 53 53 H 1.08997 * 109.46982 * 56.93490 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9432 1.3860 1.2493 5 8 1.1349 2.3913 0.0006 6 6 2.9431 1.3862 -1.2492 7 6 2.0758 1.3156 -2.4796 8 8 0.8870 1.1014 -2.3721 9 7 2.6213 1.4905 -3.6996 10 6 4.0468 1.7563 -3.9738 11 6 4.2617 1.2885 -5.4264 12 6 2.9283 1.6750 -6.1020 13 6 1.8942 1.4481 -4.9774 14 1 1.4195 0.4747 -5.1015 15 6 0.8372 2.5536 -5.0115 16 6 5.4204 2.0377 -6.0666 17 6 5.5602 1.6063 -7.5315 18 7 5.6547 0.1410 -7.5839 19 6 6.7046 -0.4666 -8.2194 20 1 7.6713 0.0143 -8.2457 21 6 6.5262 -1.7005 -8.8297 22 7 5.3121 -2.1727 -9.0171 23 14 8.0095 -2.6909 -9.3851 24 1 8.8711 -2.9913 -8.2135 25 1 7.5531 -3.9615 -10.0034 26 1 8.7837 -1.9067 -10.3807 27 6 4.6042 -0.6615 -6.9424 28 6 4.4701 -0.2173 -5.4809 29 1 -0.5401 -0.9352 -0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 3.4241 2.3632 1.2924 33 1 2.3271 1.2447 2.1373 34 1 3.7052 0.6077 1.2081 35 1 0.5434 2.4033 -0.7643 36 1 3.6470 0.5540 -1.2526 37 1 3.4930 2.3273 -1.2458 38 1 4.6773 1.1837 -3.2935 39 1 4.2586 2.8217 -3.8828 40 1 2.7235 1.0241 -6.9520 41 1 2.9404 2.7206 -6.4095 42 1 0.3288 2.5406 -5.9756 43 1 0.1113 2.3869 -4.2157 44 1 1.3184 3.5210 -4.8675 45 1 5.2299 3.1099 -6.0202 46 1 6.3416 1.8086 -5.5308 47 1 6.4617 2.0464 -7.9579 48 1 4.6892 1.9370 -8.0972 49 1 5.1875 -3.0352 -9.4433 50 1 4.8755 -1.7166 -6.9805 51 1 3.6569 -0.5087 -7.4595 52 1 5.3777 -0.4784 -4.9369 53 1 3.6163 -0.7189 -5.0254 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656393237.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:37 Heat of formation + Delta-G solvation = -64.520838 kcal Electronic energy + Delta-G solvation = -31384.469267 eV Core-core repulsion = 27449.165227 eV Total energy + Delta-G solvation = -3935.304041 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.84310 -40.45373 -38.60693 -37.29670 -34.77658 -33.98153 -33.19614 -32.55894 -31.79886 -31.59871 -29.09226 -28.46899 -27.14133 -25.74674 -24.08855 -23.65681 -22.68845 -22.41410 -20.61000 -19.95035 -19.61680 -18.46873 -18.11244 -17.62291 -17.24707 -16.88427 -16.50661 -16.16476 -15.68762 -15.39823 -15.19634 -15.07802 -14.99063 -14.61549 -14.40776 -14.15215 -13.99723 -13.62930 -13.50083 -13.36020 -13.18547 -13.13358 -13.03675 -12.91332 -12.87152 -12.79094 -12.60081 -12.54979 -12.29809 -12.18729 -12.02988 -11.93224 -11.80194 -11.72079 -11.40715 -11.07957 -11.07106 -11.01508 -10.82044 -10.49594 -10.00857 -9.58100 -8.57531 -7.84123 -5.33383 1.47580 1.47760 1.48957 1.55606 1.66359 2.00710 2.52382 3.29578 3.31316 3.41335 3.55323 3.74062 3.79557 3.83573 3.87709 3.91284 4.18003 4.25264 4.31130 4.35405 4.43058 4.49709 4.56065 4.57394 4.59642 4.70389 4.73230 4.76638 4.81574 4.86181 4.88218 4.94131 4.95734 4.97620 5.06595 5.12603 5.13938 5.26529 5.29325 5.29943 5.33910 5.42177 5.44841 5.47660 5.58346 5.68218 5.73103 5.83645 5.93610 6.43977 6.56317 6.73007 7.19385 7.19758 7.91400 8.42587 9.20761 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018217 B = 0.002847 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.688970 B = 9832.302666 C =10225.150098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.191 4.191 3 C 0.172 3.828 4 C -0.132 4.132 5 O -0.573 6.573 6 C -0.157 4.157 7 C 0.524 3.476 8 O -0.566 6.566 9 N -0.608 5.608 10 C 0.112 3.888 11 C -0.054 4.054 12 C -0.112 4.112 13 C 0.138 3.862 14 H 0.048 0.952 15 C -0.149 4.149 16 C -0.104 4.104 17 C 0.141 3.859 18 N -0.608 5.608 19 C -0.260 4.260 20 H 0.066 0.934 21 C -0.050 4.050 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.277 1.277 25 H -0.298 1.298 26 H -0.276 1.276 27 C 0.183 3.817 28 C -0.109 4.109 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.381 0.619 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.063 0.937 47 H 0.051 0.949 48 H 0.015 0.985 49 H 0.248 0.752 50 H 0.044 0.956 51 H -0.004 1.004 52 H 0.054 0.946 53 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.205 10.591 17.363 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.209 4.209 3 C 0.131 3.869 4 C -0.189 4.189 5 O -0.383 6.383 6 C -0.197 4.197 7 C 0.314 3.686 8 O -0.447 6.447 9 N -0.341 5.341 10 C -0.010 4.010 11 C -0.055 4.055 12 C -0.150 4.150 13 C 0.035 3.965 14 H 0.066 0.934 15 C -0.207 4.207 16 C -0.144 4.144 17 C 0.016 3.984 18 N -0.332 5.332 19 C -0.391 4.391 20 H 0.084 0.916 21 C -0.246 4.246 22 N -0.583 5.583 23 Si 0.793 3.207 24 H -0.203 1.203 25 H -0.224 1.224 26 H -0.201 1.201 27 C 0.057 3.943 28 C -0.148 4.148 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.233 0.767 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.033 0.967 49 H 0.057 0.943 50 H 0.063 0.937 51 H 0.014 0.986 52 H 0.072 0.928 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.597 10.476 17.958 21.293 hybrid contribution 0.064 -1.428 -1.595 2.142 sum -4.533 9.049 16.363 19.240 Atomic orbital electron populations 1.23634 0.96404 1.01468 0.98676 1.23449 0.96855 0.98626 1.01968 1.20029 0.88034 0.84385 0.94435 1.21736 0.98707 1.03773 0.94702 1.86419 1.51315 1.49594 1.50955 1.22450 0.99344 1.06787 0.91098 1.20743 0.88448 0.75419 0.83965 1.90633 1.17129 1.50642 1.86278 1.48726 1.10144 1.69966 1.05241 1.22487 0.80732 1.01906 0.95852 1.20891 0.95248 0.94966 0.94360 1.22694 0.93273 1.02573 0.96432 1.21481 0.93302 0.98488 0.83226 0.93382 1.22009 0.98369 0.97942 1.02359 1.21703 0.97119 0.99437 0.96099 1.21089 0.98404 0.83772 0.95147 1.44248 1.25597 1.00994 1.62373 1.19480 0.89945 1.02605 1.27033 0.91629 1.25853 0.98408 1.01319 0.98975 1.70145 1.21287 1.19737 1.47092 0.85390 0.79423 0.77717 0.78192 1.20309 1.22399 1.20140 1.20522 0.89226 0.95377 0.89131 1.21752 0.99790 0.95245 0.97993 0.88573 0.88941 0.86575 0.90939 0.92051 0.89015 0.76699 0.86258 0.86443 0.89316 0.88791 0.91993 0.89043 0.91181 0.92837 0.91612 0.89209 0.91814 0.93009 0.96682 0.94333 0.93704 0.98558 0.92770 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.73 12.61 67.78 0.85 -2.87 16 2 C -0.19 -3.99 7.48 25.65 0.19 -3.80 16 3 C 0.17 3.24 1.08 -11.54 -0.01 3.23 16 4 C -0.13 -1.86 8.82 71.98 0.64 -1.23 16 5 O -0.57 -13.16 11.92 -133.15 -1.59 -14.75 16 6 C -0.16 -2.65 3.91 29.85 0.12 -2.54 16 7 C 0.52 12.23 7.13 87.66 0.62 12.86 16 8 O -0.57 -16.07 11.01 12.81 0.14 -15.93 16 9 N -0.61 -13.99 3.06 -788.84 -2.41 -16.40 16 10 C 0.11 2.24 5.58 86.55 0.48 2.72 16 11 C -0.05 -1.44 0.55 -51.92 -0.03 -1.47 16 12 C -0.11 -2.99 4.46 31.56 0.14 -2.85 16 13 C 0.14 3.57 3.08 45.38 0.14 3.71 16 14 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 15 C -0.15 -3.39 9.09 71.98 0.65 -2.74 16 16 C -0.10 -2.82 4.84 30.41 0.15 -2.68 16 17 C 0.14 5.27 6.24 86.41 0.54 5.81 16 18 N -0.61 -28.96 2.97 -698.47 -2.08 -31.03 16 19 C -0.26 -13.86 9.57 84.03 0.80 -13.06 16 20 H 0.07 3.39 7.86 -2.91 -0.02 3.36 16 21 C -0.05 -2.76 5.00 84.86 0.42 -2.34 16 22 N -0.94 -54.96 11.11 21.65 0.24 -54.72 16 23 Si 0.96 44.21 29.57 68.60 2.03 46.24 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 25 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 27 C 0.18 8.48 4.97 86.41 0.43 8.91 16 28 C -0.11 -3.77 4.85 30.41 0.15 -3.63 16 29 H 0.10 2.01 8.06 -2.91 -0.02 1.98 16 30 H 0.09 2.19 6.41 -2.91 -0.02 2.18 16 31 H 0.12 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.38 9.15 5.78 -74.06 -0.43 8.72 16 36 H 0.12 1.65 8.10 -2.39 -0.02 1.63 16 37 H 0.12 1.58 8.12 -2.39 -0.02 1.56 16 38 H 0.09 1.55 7.57 -2.39 -0.02 1.54 16 39 H 0.09 1.46 7.99 -2.39 -0.02 1.44 16 40 H 0.06 2.05 6.18 -2.39 -0.01 2.03 16 41 H 0.09 2.10 7.68 -2.39 -0.02 2.09 16 42 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.05 1.37 6.90 -2.39 -0.02 1.35 16 44 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.09 1.84 8.10 -2.38 -0.02 1.82 16 46 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.05 1.92 7.93 -2.38 -0.02 1.90 16 48 H 0.02 0.58 7.63 -2.39 -0.02 0.56 16 49 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 50 H 0.04 2.44 6.09 -2.38 -0.01 2.42 16 51 H 0.00 -0.18 6.56 -2.39 -0.02 -0.19 16 52 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 53 H 0.05 1.64 7.82 -2.39 -0.02 1.62 16 Total: -1.00 -65.64 396.48 3.08 -62.57 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.45 Total: 25.99 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 6.29 Total: -1.95 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -4.25 Total: -102.16 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -1.45 Total: -30.68 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -65.64 3.08 -62.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656393237.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.956 kcal (2) G-P(sol) polarization free energy of solvation -65.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds