Wall clock time and date at job start Tue Mar 31 2020 21:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.44416 * 2 1 4 4 C 1.53031 * 109.46215 * 240.02798 * 2 1 3 5 5 C 1.53192 * 109.31212 * 178.61265 * 4 2 1 6 6 N 1.46928 * 108.77702 * 54.63486 * 5 4 2 7 7 C 1.34781 * 120.63255 * 126.36605 * 6 5 4 8 8 O 1.21281 * 120.00112 * 185.68266 * 7 6 5 9 9 C 1.50699 * 119.99844 * 5.68150 * 7 6 5 10 10 H 1.08998 * 115.56978 * 64.14399 * 9 7 6 11 11 C 1.53060 * 117.50688 * 278.41481 * 9 7 6 12 12 C 1.52707 * 117.50457 * 209.87505 * 9 7 6 13 13 C 1.53253 * 117.84410 * 359.65074 * 12 9 7 14 14 C 1.53330 * 108.48227 * 265.19441 * 13 12 9 15 15 O 1.42874 * 109.32182 * 306.00332 * 14 13 12 16 16 C 1.42876 * 114.47026 * 64.42392 * 15 14 13 17 17 C 1.53257 * 117.85943 * 215.29124 * 12 9 7 18 18 C 1.46926 * 118.73713 * 306.64424 * 6 5 4 19 19 H 1.08992 * 109.58483 * 293.56807 * 18 6 5 20 20 C 1.52999 * 109.58553 * 173.13852 * 18 6 5 21 21 N 1.46501 * 109.47094 * 68.85197 * 20 18 6 22 22 C 1.36935 * 120.00397 * 174.54921 * 21 20 18 23 23 H 1.08000 * 119.99695 * 5.03491 * 22 21 20 24 24 C 1.38807 * 120.00443 * 185.04126 * 22 21 20 25 25 N 1.31617 * 120.00596 * 184.46488 * 24 22 21 26 26 Si 1.86806 * 119.99942 * 4.46089 * 24 22 21 27 27 H 1.48499 * 109.46927 * 93.61794 * 26 24 22 28 28 H 1.48495 * 109.47126 * 213.61991 * 26 24 22 29 29 H 1.48496 * 109.46991 * 333.61882 * 26 24 22 30 30 C 1.52759 * 109.00670 * 53.30797 * 18 6 5 31 31 H 1.09001 * 109.46764 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47238 * 299.97256 * 1 2 3 33 33 H 1.09000 * 109.47145 * 59.97419 * 1 2 3 34 34 H 1.08995 * 109.49907 * 58.66409 * 4 2 1 35 35 H 1.09001 * 109.52670 * 298.57741 * 4 2 1 36 36 H 1.09000 * 109.59223 * 294.85037 * 5 4 2 37 37 H 1.08998 * 109.70673 * 174.49267 * 5 4 2 38 38 H 1.08999 * 117.50887 * 145.05923 * 11 9 7 39 39 H 1.09005 * 117.50253 * 0.02562 * 11 9 7 40 40 H 1.08994 * 109.63582 * 145.49037 * 13 12 9 41 41 H 1.08999 * 109.62916 * 24.88668 * 13 12 9 42 42 H 1.08997 * 109.49220 * 65.96031 * 14 13 12 43 43 H 1.09000 * 109.49462 * 186.05228 * 14 13 12 44 44 H 1.09004 * 109.50029 * 55.52836 * 16 15 14 45 45 H 1.09008 * 109.49774 * 175.61768 * 16 15 14 46 46 H 1.09004 * 109.63376 * 335.10473 * 17 12 9 47 47 H 1.08996 * 109.80345 * 214.59483 * 17 12 9 48 48 H 1.09001 * 109.47182 * 188.84762 * 20 18 6 49 49 H 1.08999 * 109.47519 * 308.85140 * 20 18 6 50 50 H 0.96999 * 119.99948 * 354.54457 * 21 20 18 51 51 H 0.97002 * 120.00767 * 179.97438 * 25 24 22 52 52 H 1.09004 * 109.56234 * 185.55374 * 30 18 6 53 53 H 1.09004 * 109.39272 * 65.51625 * 30 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2499 5 6 3.5714 -0.6886 -1.2640 6 7 4.0679 -1.2486 0.0003 7 6 4.9615 -2.2576 0.0005 8 8 5.2859 -2.7803 1.0457 9 6 5.5576 -2.7364 -1.2982 10 1 6.1725 -2.0101 -1.8296 11 6 4.7300 -3.7118 -2.1388 12 6 5.9649 -4.2054 -1.3880 13 6 5.7472 -5.0854 -0.1524 14 6 7.0505 -5.1214 0.6545 15 8 8.1220 -5.5331 -0.1963 16 6 8.4135 -4.6266 -1.2616 17 6 7.2106 -4.5543 -2.2097 18 6 3.5671 -0.6920 1.2645 19 1 3.9096 0.3371 1.3716 20 6 4.0829 -1.5319 2.4347 21 7 5.5296 -1.3446 2.5699 22 6 6.1980 -1.9112 3.6222 23 1 5.6747 -2.5625 4.3066 24 6 7.5481 -1.6485 3.8093 25 7 8.2112 -2.2609 4.7672 26 14 8.4240 -0.4257 2.7015 27 1 8.4079 0.9168 3.3360 28 1 9.8293 -0.8604 2.4982 29 1 7.7311 -0.3616 1.3897 30 6 2.0399 -0.7205 1.2502 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5134 0.8902 33 1 -0.3633 0.5142 -0.8897 34 1 1.6573 -0.2209 -2.1397 35 1 1.6979 -1.7557 -1.2386 36 1 3.9144 0.3409 -1.3672 37 1 3.9439 -1.2831 -2.0983 38 1 4.8005 -3.6270 -3.2232 39 1 3.7543 -4.0067 -1.7525 40 1 5.4814 -6.0954 -0.4642 41 1 4.9489 -4.6660 0.4599 42 1 7.2611 -4.1278 1.0498 43 1 6.9488 -5.8274 1.4787 44 1 8.6141 -3.6365 -0.8522 45 1 9.2879 -4.9782 -1.8094 46 1 7.3819 -3.7829 -2.9606 47 1 7.0718 -5.5180 -2.6997 48 1 3.5884 -1.2171 3.3536 49 1 3.8686 -2.5844 2.2489 50 1 6.0140 -0.8193 1.9140 51 1 9.1548 -2.0776 4.8978 52 1 1.6572 -0.2204 2.1399 53 1 1.6973 -1.7553 1.2389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656597879.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:52 Heat of formation + Delta-G solvation = -30.225165 kcal Electronic energy + Delta-G solvation = -32701.558075 eV Core-core repulsion = 28767.741206 eV Total energy + Delta-G solvation = -3933.816869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.93290 -40.38341 -38.53942 -37.51976 -36.21220 -34.74929 -33.82715 -32.12145 -31.99707 -31.04547 -29.24829 -27.31783 -25.58026 -24.68874 -24.19802 -24.06032 -23.57741 -22.71451 -21.15123 -20.40488 -19.69102 -19.03600 -17.77091 -17.19587 -16.94503 -16.71632 -16.66705 -16.19285 -15.89438 -15.71980 -15.56958 -15.33947 -15.05053 -14.77218 -14.72265 -14.34280 -14.24496 -13.91539 -13.85259 -13.57396 -13.51050 -13.34019 -13.05361 -12.91664 -12.84221 -12.69513 -12.53287 -12.24163 -12.14186 -12.11833 -11.97699 -11.84737 -11.71496 -11.59357 -11.32718 -11.29329 -11.20817 -10.93659 -10.76678 -10.19627 -9.70552 -9.48719 -8.85006 -7.94966 -5.16700 1.25495 1.31428 1.37694 1.90304 2.12080 2.49463 2.74056 2.94200 3.36459 3.48600 3.63204 3.67065 3.77746 3.86763 3.89003 3.94632 4.04998 4.13354 4.17453 4.29908 4.31762 4.35419 4.38571 4.52163 4.56201 4.57539 4.68851 4.73240 4.77083 4.79909 4.83433 4.84711 4.88279 4.94979 4.98549 4.98952 5.01779 5.07882 5.13440 5.15921 5.18080 5.23025 5.27291 5.31788 5.35289 5.44132 5.58642 5.81247 5.87329 6.27765 6.28898 6.70496 7.17429 7.61440 7.97032 8.16040 9.28694 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008833 B = 0.006272 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.053471 B = 4463.221988 C = 6673.490011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 H 0.074 0.926 4 C -0.120 4.120 5 C 0.107 3.893 6 N -0.612 5.612 7 C 0.494 3.506 8 O -0.494 6.494 9 C -0.182 4.182 10 H 0.132 0.868 11 C -0.113 4.113 12 C -0.113 4.113 13 C -0.101 4.101 14 C 0.077 3.923 15 O -0.406 6.406 16 C 0.052 3.948 17 C -0.103 4.103 18 C 0.145 3.855 19 H 0.064 0.936 20 C 0.170 3.830 21 N -0.719 5.719 22 C -0.185 4.185 23 H 0.043 0.957 24 C -0.072 4.072 25 N -0.992 5.992 26 Si 0.953 3.047 27 H -0.282 1.282 28 H -0.302 1.302 29 H -0.266 1.266 30 C -0.112 4.112 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.138 0.862 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.029 0.971 43 H 0.071 0.929 44 H 0.026 0.974 45 H 0.114 0.886 46 H 0.101 0.899 47 H 0.091 0.909 48 H 0.013 0.987 49 H 0.028 0.972 50 H 0.357 0.643 51 H 0.251 0.749 52 H 0.075 0.925 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.669 2.963 -24.095 28.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 H 0.092 0.908 4 C -0.158 4.158 5 C -0.015 4.015 6 N -0.348 5.348 7 C 0.281 3.719 8 O -0.367 6.367 9 C -0.203 4.203 10 H 0.150 0.850 11 C -0.150 4.150 12 C -0.114 4.114 13 C -0.139 4.139 14 C 0.000 4.000 15 O -0.326 6.326 16 C -0.025 4.025 17 C -0.140 4.140 18 C 0.041 3.959 19 H 0.082 0.918 20 C 0.044 3.956 21 N -0.364 5.364 22 C -0.317 4.317 23 H 0.061 0.939 24 C -0.261 4.261 25 N -0.645 5.645 26 Si 0.784 3.216 27 H -0.209 1.209 28 H -0.229 1.229 29 H -0.192 1.192 30 C -0.151 4.151 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.155 0.845 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.089 0.911 44 H 0.044 0.956 45 H 0.132 0.868 46 H 0.119 0.881 47 H 0.110 0.890 48 H 0.030 0.970 49 H 0.046 0.954 50 H 0.190 0.810 51 H 0.060 0.940 52 H 0.094 0.906 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.399 2.395 -23.309 27.502 hybrid contribution 1.085 0.776 0.550 1.443 sum -13.314 3.171 -22.758 26.557 Atomic orbital electron populations 1.21767 0.93836 1.01880 1.02305 1.21097 0.96495 0.99346 0.93704 0.90759 1.21932 0.94010 1.01298 0.98538 1.21906 0.95014 0.99486 0.85114 1.48047 1.43862 1.35871 1.07069 1.20293 0.79827 0.81440 0.90374 1.91110 1.59182 1.54338 1.32030 1.22330 1.06156 0.94534 0.97321 0.85036 1.23133 0.94400 0.97918 0.99510 1.21464 0.98118 0.93370 0.98416 1.21645 0.97692 0.99193 0.95329 1.22311 0.86832 0.98951 0.91885 1.87767 1.53616 1.48306 1.42880 1.22798 0.98856 0.92638 0.88171 1.21775 0.91460 1.03922 0.96820 1.21257 0.95049 0.96294 0.83255 0.91823 1.20851 0.83198 0.97492 0.94074 1.42548 1.04371 1.61703 1.27729 1.18867 0.92393 1.18788 1.01685 0.93873 1.25261 0.97211 1.03226 1.00431 1.69888 1.08683 1.48712 1.37264 0.85398 0.77269 0.79595 0.79363 1.20883 1.22947 1.19205 1.21820 0.92195 1.01380 0.99721 0.92959 0.92768 0.91218 0.88317 0.91939 0.91302 0.87985 0.84450 0.88616 0.90942 0.91157 0.95274 0.91100 0.95561 0.86805 0.88108 0.89029 0.96954 0.95402 0.80976 0.94042 0.90600 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.19 71.98 0.66 -1.10 16 2 C -0.09 -1.36 2.68 -10.77 -0.03 -1.39 16 3 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.12 -1.57 5.36 30.67 0.16 -1.40 16 5 C 0.11 1.77 6.33 86.36 0.55 2.32 16 6 N -0.61 -16.43 2.98 -795.83 -2.37 -18.81 16 7 C 0.49 16.13 6.31 87.66 0.55 16.68 16 8 O -0.49 -21.44 6.54 -3.03 -0.02 -21.46 16 9 C -0.18 -4.46 4.19 -11.62 -0.05 -4.51 16 10 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 11 C -0.11 -1.92 8.92 30.52 0.27 -1.64 16 12 C -0.11 -2.82 2.02 -52.20 -0.11 -2.93 16 13 C -0.10 -3.30 5.13 30.79 0.16 -3.14 16 14 C 0.08 3.13 6.61 72.09 0.48 3.60 16 15 O -0.41 -15.14 10.69 -148.98 -1.59 -16.74 16 16 C 0.05 1.48 6.84 72.10 0.49 1.97 16 17 C -0.10 -2.16 5.92 30.79 0.18 -1.97 16 18 C 0.15 4.37 2.92 44.83 0.13 4.50 16 19 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 20 C 0.17 7.12 4.86 86.38 0.42 7.54 16 21 N -0.72 -36.70 2.99 -343.46 -1.03 -37.73 16 22 C -0.19 -11.52 10.19 84.03 0.86 -10.66 16 23 H 0.04 2.98 8.06 -2.91 -0.02 2.95 16 24 C -0.07 -4.58 5.50 84.86 0.47 -4.12 16 25 N -0.99 -68.56 13.97 21.65 0.30 -68.26 16 26 Si 0.95 50.63 27.98 68.60 1.92 52.55 16 27 H -0.28 -14.47 7.11 99.48 0.71 -13.77 16 28 H -0.30 -16.29 7.11 99.48 0.71 -15.59 16 29 H -0.27 -13.09 6.19 99.48 0.62 -12.47 16 30 C -0.11 -2.52 4.62 30.53 0.14 -2.38 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.10 0.80 8.14 -2.39 -0.02 0.79 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 1.34 5.74 -2.39 -0.01 1.33 16 38 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.07 2.63 5.68 -2.39 -0.01 2.62 16 42 H 0.03 1.45 7.05 -2.39 -0.02 1.44 16 43 H 0.07 3.00 8.14 -2.39 -0.02 2.99 16 44 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 46 H 0.10 1.53 8.08 -2.38 -0.02 1.51 16 47 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.01 0.54 8.13 -2.39 -0.02 0.52 16 49 H 0.03 1.30 6.37 -2.39 -0.02 1.28 16 50 H 0.36 17.97 4.74 -92.71 -0.44 17.53 16 51 H 0.25 16.63 8.31 -92.71 -0.77 15.85 16 52 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 53 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -81.98 391.86 2.90 -79.08 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 0.35 Total: 29.98 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 5.34 Total: 1.38 kcal Atomic # 7 Polarization: -121.70 SS G_CDS: -3.09 Total: -124.79 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -1.61 Total: -38.19 kcal Atomic # 14 Polarization: 50.63 SS G_CDS: 1.92 Total: 52.55 kcal Total: -81.98 2.90 -79.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656597879.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.855 kcal (2) G-P(sol) polarization free energy of solvation -81.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds