Wall clock time and date at job start Tue Mar 31 2020 21:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.45917 * 2 1 4 4 C 1.53043 * 109.46531 * 240.01662 * 2 1 3 5 5 C 1.53186 * 109.31588 * 178.61061 * 4 2 1 6 6 N 1.46929 * 108.77128 * 54.64148 * 5 4 2 7 7 C 1.34780 * 120.62945 * 126.36987 * 6 5 4 8 8 O 1.21281 * 119.99567 * 185.76474 * 7 6 5 9 9 C 1.50697 * 120.00091 * 5.76172 * 7 6 5 10 10 H 1.08996 * 115.55642 * 21.27568 * 9 7 6 11 11 C 1.53058 * 117.50428 * 167.03496 * 9 7 6 12 12 C 1.52709 * 59.92878 * 107.46856 * 11 9 7 13 13 C 1.53251 * 117.87884 * 252.21458 * 12 11 9 14 14 C 1.53344 * 108.64414 * 163.62230 * 13 12 11 15 15 O 1.43321 * 109.08081 * 53.90893 * 14 13 12 16 16 C 1.42865 * 114.60862 * 295.73699 * 15 14 13 17 17 C 1.53253 * 117.89119 * 107.78815 * 12 11 9 18 18 C 1.46923 * 118.73987 * 306.63824 * 6 5 4 19 19 H 1.08998 * 109.58994 * 293.57223 * 18 6 5 20 20 C 1.53003 * 109.58932 * 173.14290 * 18 6 5 21 21 N 1.46500 * 109.47124 * 179.97438 * 20 18 6 22 22 C 1.36935 * 119.99656 * 174.97502 * 21 20 18 23 23 H 1.08005 * 120.00291 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00080 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99564 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00214 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47258 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47152 * 120.00616 * 26 24 22 29 29 H 1.48496 * 109.47472 * 240.00235 * 26 24 22 30 30 C 1.52765 * 109.00792 * 53.31059 * 18 6 5 31 31 H 1.09008 * 109.46934 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47530 * 299.97694 * 1 2 3 33 33 H 1.08999 * 109.46933 * 59.98315 * 1 2 3 34 34 H 1.09004 * 109.49055 * 58.66733 * 4 2 1 35 35 H 1.08994 * 109.49451 * 298.57207 * 4 2 1 36 36 H 1.09000 * 109.59202 * 294.85747 * 5 4 2 37 37 H 1.08999 * 109.58604 * 174.42327 * 5 4 2 38 38 H 1.09001 * 117.50746 * 359.97438 * 11 9 7 39 39 H 1.08999 * 117.50179 * 214.93419 * 11 9 7 40 40 H 1.08994 * 109.63110 * 283.41960 * 13 12 11 41 41 H 1.08994 * 109.63981 * 43.82378 * 13 12 11 42 42 H 1.09000 * 109.49251 * 174.04831 * 14 13 12 43 43 H 1.09001 * 109.49659 * 294.13940 * 14 13 12 44 44 H 1.09000 * 109.49293 * 304.43911 * 16 15 14 45 45 H 1.09001 * 109.51398 * 184.37080 * 16 15 14 46 46 H 1.09003 * 109.63388 * 315.97165 * 17 12 11 47 47 H 1.09001 * 109.63271 * 76.37546 * 17 12 11 48 48 H 1.08997 * 109.47381 * 299.97657 * 20 18 6 49 49 H 1.09004 * 109.46868 * 59.97206 * 20 18 6 50 50 H 0.96992 * 120.00058 * 354.98522 * 21 20 18 51 51 H 0.97003 * 119.99735 * 180.02562 * 25 24 22 52 52 H 1.08999 * 109.56769 * 185.55114 * 30 18 6 53 53 H 1.09007 * 109.38405 * 65.51256 * 30 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2498 5 6 3.5714 -0.6888 -1.2640 6 7 4.0678 -1.2488 0.0004 7 6 4.9615 -2.2578 0.0007 8 8 5.2846 -2.7813 1.0459 9 6 5.5590 -2.7354 -1.2977 10 1 5.5195 -2.0247 -2.1231 11 6 6.7761 -3.6600 -1.2178 12 6 5.4175 -4.2179 -1.6361 13 6 4.6720 -5.1115 -0.6390 14 6 3.2050 -5.2134 -1.0738 15 8 3.1499 -5.6498 -2.4378 16 6 3.7189 -4.7369 -3.3779 17 6 5.2218 -4.6007 -3.1071 18 6 3.5671 -0.6920 1.2645 19 1 3.9096 0.3372 1.3716 20 6 4.0829 -1.5317 2.4349 21 7 3.5827 -0.9740 3.6939 22 6 3.8299 -1.6208 4.8752 23 1 4.3940 -2.5418 4.8790 24 6 3.3555 -1.0927 6.0682 25 7 2.6676 0.0295 6.0636 26 14 3.6933 -1.9746 7.6798 27 1 4.4820 -3.2046 7.4152 28 1 4.4609 -1.0794 8.5825 29 1 2.4060 -2.3404 8.3233 30 6 2.0398 -0.7204 1.2503 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5134 0.8901 33 1 -0.3633 0.5141 -0.8898 34 1 1.6573 -0.2212 -2.1397 35 1 1.6978 -1.7559 -1.2378 36 1 3.9143 0.3407 -1.3673 37 1 3.9417 -1.2850 -2.0980 38 1 7.1448 -3.9224 -0.2262 39 1 7.5378 -3.5574 -1.9908 40 1 5.1213 -6.1045 -0.6302 41 1 4.7290 -4.6748 0.3580 42 1 2.6857 -5.9291 -0.4364 43 1 2.7307 -4.2360 -0.9856 44 1 3.2409 -3.7629 -3.2742 45 1 3.5641 -5.1123 -4.3895 46 1 5.6404 -3.8236 -3.7466 47 1 5.7208 -5.5488 -3.3083 48 1 3.7327 -2.5583 2.3277 49 1 5.1728 -1.5183 2.4391 50 1 3.0763 -0.1468 3.6905 51 1 2.3364 0.3987 6.8972 52 1 1.6571 -0.2202 2.1399 53 1 1.6973 -1.7552 1.2390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656597880.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:56 Heat of formation + Delta-G solvation = -59.873380 kcal Electronic energy + Delta-G solvation = -31837.068486 eV Core-core repulsion = 27901.965974 eV Total energy + Delta-G solvation = -3935.102512 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.05150 -40.41183 -38.81593 -37.30119 -36.56074 -34.94444 -33.86872 -32.17765 -31.54993 -31.07827 -29.35388 -27.28588 -26.05332 -24.70919 -24.68479 -24.14315 -23.64895 -22.30649 -21.29443 -20.56206 -19.46807 -19.00477 -18.12801 -17.30591 -17.00139 -16.83990 -16.57715 -16.43416 -15.85526 -15.63251 -15.48239 -15.43331 -15.22406 -14.87456 -14.60229 -14.46199 -14.31985 -14.05637 -13.94274 -13.76978 -13.46542 -13.19983 -12.99078 -12.88262 -12.82622 -12.76345 -12.56571 -12.27946 -12.19411 -12.13325 -12.05753 -11.92450 -11.78848 -11.66656 -11.39745 -11.34620 -11.22160 -11.08381 -10.92190 -10.24719 -10.12425 -9.55725 -8.96972 -7.98467 -5.26207 1.41752 1.42966 1.47971 1.53943 1.91611 2.53718 2.80992 2.91930 3.34296 3.38530 3.62241 3.71121 3.73357 3.80175 3.82691 3.87036 4.01299 4.06997 4.08537 4.11372 4.18606 4.24577 4.36391 4.44093 4.50318 4.54190 4.64886 4.65841 4.68650 4.75501 4.79165 4.81283 4.84079 4.88354 4.91541 4.93409 5.06132 5.07460 5.09936 5.13807 5.17509 5.22495 5.24612 5.28562 5.32105 5.38323 5.44092 5.51937 5.68248 6.24489 6.26020 6.50570 7.27099 7.30656 8.05188 8.32378 9.25265 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011506 B = 0.003816 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.849661 B = 7335.343786 C = 8548.047235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.078 0.922 4 C -0.121 4.121 5 C 0.101 3.899 6 N -0.601 5.601 7 C 0.526 3.474 8 O -0.566 6.566 9 C -0.182 4.182 10 H 0.157 0.843 11 C -0.136 4.136 12 C -0.088 4.088 13 C -0.135 4.135 14 C 0.073 3.927 15 O -0.400 6.400 16 C 0.054 3.946 17 C -0.108 4.108 18 C 0.150 3.850 19 H 0.066 0.934 20 C 0.182 3.818 21 N -0.745 5.745 22 C -0.241 4.241 23 H 0.060 0.940 24 C -0.071 4.071 25 N -0.966 5.966 26 Si 0.972 3.028 27 H -0.274 1.274 28 H -0.287 1.287 29 H -0.287 1.287 30 C -0.109 4.109 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.136 0.864 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.042 0.958 44 H 0.059 0.941 45 H 0.116 0.884 46 H 0.107 0.893 47 H 0.083 0.917 48 H 0.011 0.989 49 H 0.017 0.983 50 H 0.372 0.628 51 H 0.253 0.747 52 H 0.053 0.947 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.575 -3.601 -28.872 29.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.096 0.904 4 C -0.159 4.159 5 C -0.020 4.020 6 N -0.334 5.334 7 C 0.316 3.684 8 O -0.445 6.445 9 C -0.203 4.203 10 H 0.174 0.826 11 C -0.174 4.174 12 C -0.089 4.089 13 C -0.172 4.172 14 C -0.003 4.003 15 O -0.319 6.319 16 C -0.022 4.022 17 C -0.145 4.145 18 C 0.046 3.954 19 H 0.084 0.916 20 C 0.056 3.944 21 N -0.390 5.390 22 C -0.373 4.373 23 H 0.078 0.922 24 C -0.263 4.263 25 N -0.617 5.617 26 Si 0.801 3.199 27 H -0.199 1.199 28 H -0.214 1.214 29 H -0.214 1.214 30 C -0.148 4.148 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.127 0.873 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.131 0.869 38 H 0.097 0.903 39 H 0.154 0.846 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.134 0.866 46 H 0.125 0.875 47 H 0.102 0.898 48 H 0.029 0.971 49 H 0.034 0.966 50 H 0.205 0.795 51 H 0.062 0.938 52 H 0.071 0.929 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.737 -4.186 -28.312 28.672 hybrid contribution 0.033 0.217 2.123 2.134 sum 1.770 -3.969 -26.189 26.547 Atomic orbital electron populations 1.21775 0.94299 1.01644 1.02210 1.21138 0.96405 0.99518 0.93633 0.90382 1.21962 0.94523 1.01023 0.98355 1.22134 0.94757 1.00531 0.84531 1.48138 1.42697 1.35272 1.07270 1.20373 0.78607 0.78935 0.90485 1.90792 1.62601 1.56911 1.34224 1.22554 1.05392 0.95430 0.96921 0.82586 1.23106 0.90833 0.99939 1.03488 1.21422 0.99513 0.90770 0.97166 1.21925 0.96298 1.00111 0.98882 1.22492 0.95194 0.99522 0.83129 1.87910 1.81084 1.46826 1.16107 1.22865 0.92255 0.93852 0.93246 1.21882 0.97701 1.03799 0.91149 1.21113 0.94565 0.96484 0.83222 0.91556 1.21050 0.95415 0.93920 0.84018 1.42738 1.65788 1.28133 1.02338 1.19506 1.27340 1.04271 0.86216 0.92200 1.25496 1.01310 0.98711 1.00773 1.69810 1.43121 1.22264 1.26513 0.85098 0.77228 0.77780 0.79826 1.19926 1.21420 1.21395 1.21771 0.93609 1.00300 0.99099 0.93356 0.93810 0.90227 0.87259 0.92466 0.89646 0.86861 0.90317 0.84643 0.90637 0.91811 0.89297 0.93994 0.92310 0.86597 0.87456 0.89835 0.97110 0.96552 0.79500 0.93845 0.92862 0.93816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.19 71.98 0.66 -2.27 16 2 C -0.09 -1.98 2.68 -10.77 -0.03 -2.01 16 3 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.12 -1.94 5.36 30.67 0.16 -1.77 16 5 C 0.10 1.65 6.25 86.36 0.54 2.19 16 6 N -0.60 -16.56 2.98 -795.82 -2.37 -18.93 16 7 C 0.53 15.88 6.67 87.66 0.58 16.47 16 8 O -0.57 -23.15 9.73 -3.03 -0.03 -23.18 16 9 C -0.18 -3.55 4.92 -11.61 -0.06 -3.61 16 10 H 0.16 1.83 6.44 -2.39 -0.02 1.81 16 11 C -0.14 -2.61 9.51 30.52 0.29 -2.32 16 12 C -0.09 -1.63 2.03 -52.20 -0.11 -1.73 16 13 C -0.13 -3.37 5.56 30.79 0.17 -3.20 16 14 C 0.07 1.74 6.89 72.10 0.50 2.23 16 15 O -0.40 -8.51 10.70 -148.98 -1.59 -10.11 16 16 C 0.05 0.70 6.85 72.09 0.49 1.20 16 17 C -0.11 -1.24 5.92 30.78 0.18 -1.06 16 18 C 0.15 5.41 3.03 44.83 0.14 5.54 16 19 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 20 C 0.18 8.79 4.10 86.38 0.35 9.14 16 21 N -0.74 -42.13 5.28 -343.44 -1.81 -43.95 16 22 C -0.24 -14.96 9.99 84.03 0.84 -14.12 16 23 H 0.06 3.75 7.83 -2.91 -0.02 3.73 16 24 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 25 N -0.97 -61.42 13.06 21.65 0.28 -61.14 16 26 Si 0.97 49.26 29.55 68.60 2.03 51.29 16 27 H -0.27 -13.49 7.11 99.48 0.71 -12.78 16 28 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 29 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 30 C -0.11 -3.64 4.37 30.53 0.13 -3.51 16 31 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.11 1.17 5.61 -2.39 -0.01 1.15 16 38 H 0.08 2.04 7.73 -2.39 -0.02 2.02 16 39 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.06 2.11 5.47 -2.39 -0.01 2.10 16 42 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.11 0.61 8.08 -2.39 -0.02 0.59 16 47 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.01 0.58 7.03 -2.39 -0.02 0.56 16 49 H 0.02 0.89 6.45 -2.38 -0.02 0.87 16 50 H 0.37 21.53 6.76 -92.71 -0.63 20.90 16 51 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 52 H 0.05 2.11 7.17 -2.39 -0.02 2.09 16 53 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -79.02 398.58 2.09 -76.94 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 0.26 Total: 31.75 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 5.32 Total: -2.68 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -3.90 Total: -124.02 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -1.62 Total: -33.28 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.03 Total: 51.29 kcal Total: -79.02 2.09 -76.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656597880.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.064 kcal (2) G-P(sol) polarization free energy of solvation -79.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds